Clone BS04470 Report

Search the DGRC for BS04470

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptOdsH-RA
Protein status:BS04470.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04470.3prime Sequence

966 bp (852 high quality bases) assembled on 2005-12-01

> BS04470.3prime
ATGGTCTAGAAAGCTTTTACGATCCCAACAGGGATTCGATGCTGAAGGGC
GAATTGTAGAGGGTCTTATTCTGCATCGGTGGCTGTGGTGGTGGCGGAGT
TTCCACTCTTCCCTGGAGTCCCATATCATTGGAATCCAGTTCGCTGCTGG
TGCTCTTCGTCTGGTACGTCCTGGAGGAGCAGAACGAGTGATCCAAACTG
TCGCCGGTCACGTACTCCGGTTCAACGCCCACCACATCGATGTGCAGATC
ATCGTAGCCATCATCATCCAGCCAGTTATTCTCATCCACTCCGTTCTCCT
GGTGGGCAGCTAGGTACTCGGCCTCCAGACGGGCATAGTCCACTTCCAAT
CCCTTGTCCTGTAGCTTCTTCGCCTGCCGATCGATGGCTTTCTTCATCCG
CTTGCTGCGCTGGGCTAGTTCTCTGGCCCGAAGTTCGCTCAATGGAATGG
GGTCACCACTGCAGCTCTGGGGGTGGGCATTATGAGCTGGTCGTCCAGGA
CCCTTCTTGGTATGCTCCTGCTTACGCCATTTGGCACGACGATTCTGGAA
CCAAACCGCTATACGACCCTCCATTAGATCGAGTTTGGTGGCCAAGGCCT
CACGCATGAAAATGTCAGGATAGTGACTTCCCTGGAAGACTCTCTCCAGC
TCCCTCAGCTGCCAGGAGTTGAAGTTGGTCCTGCCGCGTCGCTTCTTCGA
GGACTCTGTACAATCATTCTGCCCCAGATTGGAATCGGCCCCTTCATCGC
TTAGCGGATCTTGTTTGATCCCGCGACTAGAGCCCGCGTGGATGTTGTGC
GTGGGTGACACTGAGTCCAACTTAATACGCTGCTCACTGTGCGGATCCAT
GCCAAGCTCCCGATTGAGATCCCTTTGCTGTTGCTGCTGCTGCTGCATTG
CCACTGCTGCGGCGGCCACTCTGGCTTGCTGTATCAGCGCCATTTGGCGG
ATCATATACACGGAGG

BS04470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6352-PA 1149 OdsH-RA 200..1149 966..17 4750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 257..1206 966..17 4750 100 Minus
unc-4-RC 2995 CG6269-RC 1104..1339 679..444 400 78 Minus
unc-4-RB 2866 CG6269-RB 1104..1339 679..444 400 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17813529..17813928 416..17 2000 100 Minus
X 23542271 X 17811680..17811909 784..555 1150 100 Minus
X 23542271 X 17791266..17791449 966..783 920 100 Minus
X 23542271 X 17813309..17813449 557..417 705 100 Minus
X 23542271 X 17776415..17776528 557..444 240 80.7 Minus
X 23542271 X 17776153..17776243 679..589 230 83.5 Minus
Blast to na_te.dros performed on 2015-02-09 02:51:26 has no hits.

BS04470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:17 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 200..1149 17..966 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:03 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 200..1149 17..966 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:09:12 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 257..1206 17..966 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:24 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 257..1206 17..966 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:24 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17811681..17811907 557..783 100 -> Minus
X 17813310..17813449 417..556 100 -> Minus
X 17791266..17791448 784..966 100 -> Minus
X 17813529..17813928 17..416 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:09:12 Download gff for BS04470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685299..17685481 784..966 100 -> Minus
arm_X 17705714..17705940 557..783 100 -> Minus
arm_X 17707343..17707482 417..556 100 -> Minus
arm_X 17707562..17707961 17..416 100   Minus

BS04470.5prime Sequence

909 bp (754 high quality bases) assembled on 2005-12-01

> BS04470.5prime
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAACTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAAACGGAGTGGATG
AAAATAACT

BS04470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6352-PA 1149 OdsH-RA 1..872 17..888 4335 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 58..949 17..909 4410 99.7 Plus
unc-4-RC 2995 CG6269-RC 1104..1432 503..831 415 75.1 Plus
unc-4-RB 2866 CG6269-RB 1104..1432 503..831 415 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17791067..17791449 17..399 1915 100 Plus
X 23542271 X 17811680..17811909 398..627 1150 100 Plus
X 23542271 X 17813309..17813449 625..765 705 100 Plus
X 23542271 X 17813529..17813671 766..909 640 97.9 Plus
X 23542271 X 17776415..17776528 625..738 240 80.7 Plus
X 23542271 X 17776153..17776243 503..593 230 83.5 Plus
Blast to na_te.dros performed on 2015-02-02 12:18:01 has no hits.

BS04470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:19 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 1..892 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:05 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 1..892 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:47 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 50..949 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:26 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 50..949 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:26 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17791059..17791448 10..398 99 -> Plus
X 17811681..17811907 399..625 100 -> Plus
X 17813310..17813449 626..765 100 -> Plus
X 17813529..17813671 766..909 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:47 Download gff for BS04470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685092..17685481 10..398 99 -> Plus
arm_X 17705714..17705940 399..625 100 -> Plus
arm_X 17707343..17707482 626..765 100 -> Plus
arm_X 17707562..17707704 766..909 97   Plus

BS04470.complete Sequence

1181 bp (1181 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634952

> BS04470.complete
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAACGGAGTGGATGA
GAATAACTGGCTGGATGATGATGGCTACGATGATCTGCACATCGATGTGG
TGGGCGTTGAACCGGAGTACGTGACCGGCGACAGTTTGGATCACTCGTTC
TGCTCCTCCAGGACGTACCAGACGAAGAGCACCAGCAGCGAACTGGATTC
CAATGATATGGGACTCCAGGGAAGAGTGGAAACTCCGCCACCACCACAGC
CACCGATGCAGAATAAGACCCTCTACAATTCGCCCTTCAGCATCGAATCC
CTGTTGGGATCGTAAAAGCTTTCTAGACCAT

BS04470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1149 CG6352-PA 1..1149 17..1165 5745 100 Plus
unc-4-RC 1767 CG6269-PC 742..977 503..738 400 78 Plus
unc-4-RB 1767 CG6269-PB 742..977 503..738 400 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 58..1206 17..1165 5745 100 Plus
unc-4-RC 2995 CG6269-RC 1104..1339 503..738 400 78 Plus
unc-4-RB 2866 CG6269-RB 1104..1339 503..738 400 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17813529..17813928 766..1165 2000 100 Plus
X 23542271 X 17791067..17791449 17..399 1915 100 Plus
X 23542271 X 17811680..17811909 398..627 1150 100 Plus
X 23542271 X 17813309..17813449 625..765 705 100 Plus
X 23542271 X 17776415..17776528 625..738 240 80.7 Plus
X 23542271 X 17776153..17776243 503..593 230 83.5 Plus
Blast to na_te.dros performed on 2014-11-28 07:47:40 has no hits.

BS04470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:08 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:23 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 18..1164 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:04 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 58..1204 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:08 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 10..1166 10..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:02 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 58..1204 17..1163 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:02 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
X 17813529..17813926 766..1163 100   Plus
X 17791067..17791448 17..398 100 -> Plus
X 17811681..17811907 399..625 100 -> Plus
X 17813310..17813449 626..765 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:04 Download gff for BS04470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685100..17685481 17..398 100 -> Plus
arm_X 17705714..17705940 399..625 100 -> Plus
arm_X 17707343..17707482 626..765 100 -> Plus
arm_X 17707562..17707959 766..1163 100   Plus

BS04470.pep Sequence

Translation from 16 to 1164

> BS04470.pep
MDQLIQQLQQAAAARGQVQHPHGSSALQLYAAAAAVNMQVSGWSSVLNLS
MDAPNPEISPNSVTNSSSVYMIRQMALIQQARVAAAAVAMQQQQQQQRDL
NRELGMDPHSEQRIKLDSVSPTHNIHAGSSRGIKQDPLSDEGADSNLGQN
DCTESSKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEG
RIAVWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRAREL
AQRSKRMKKAIDRQAKKLQDKGLEVDYARLEAEYLAAHQENGVDENNWLD
DDGYDDLHIDVVGVEPEYVTGDSLDHSFCSSRTYQTKSTSSELDSNDMGL
QGRVETPPPPQPPMQNKTLYNSPFSIESLLGS*

BS04470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-PA 382 CG6352-PA 1..382 1..382 1986 100 Plus
unc-4-PC 588 CG6269-PC 92..405 22..323 599 44.2 Plus
unc-4-PB 588 CG6269-PB 92..405 22..323 599 44.2 Plus
Rx-PB 904 CG10052-PB 432..621 52..220 259 34.6 Plus
al-PA 408 CG3935-PA 56..156 127..231 238 48.6 Plus