Clone Sequence Records
BS04470.3prime Sequence
966 bp (852 high quality bases) assembled on 2005-12-01
> BS04470.3prime
ATGGTCTAGAAAGCTTTTACGATCCCAACAGGGATTCGATGCTGAAGGGC
GAATTGTAGAGGGTCTTATTCTGCATCGGTGGCTGTGGTGGTGGCGGAGT
TTCCACTCTTCCCTGGAGTCCCATATCATTGGAATCCAGTTCGCTGCTGG
TGCTCTTCGTCTGGTACGTCCTGGAGGAGCAGAACGAGTGATCCAAACTG
TCGCCGGTCACGTACTCCGGTTCAACGCCCACCACATCGATGTGCAGATC
ATCGTAGCCATCATCATCCAGCCAGTTATTCTCATCCACTCCGTTCTCCT
GGTGGGCAGCTAGGTACTCGGCCTCCAGACGGGCATAGTCCACTTCCAAT
CCCTTGTCCTGTAGCTTCTTCGCCTGCCGATCGATGGCTTTCTTCATCCG
CTTGCTGCGCTGGGCTAGTTCTCTGGCCCGAAGTTCGCTCAATGGAATGG
GGTCACCACTGCAGCTCTGGGGGTGGGCATTATGAGCTGGTCGTCCAGGA
CCCTTCTTGGTATGCTCCTGCTTACGCCATTTGGCACGACGATTCTGGAA
CCAAACCGCTATACGACCCTCCATTAGATCGAGTTTGGTGGCCAAGGCCT
CACGCATGAAAATGTCAGGATAGTGACTTCCCTGGAAGACTCTCTCCAGC
TCCCTCAGCTGCCAGGAGTTGAAGTTGGTCCTGCCGCGTCGCTTCTTCGA
GGACTCTGTACAATCATTCTGCCCCAGATTGGAATCGGCCCCTTCATCGC
TTAGCGGATCTTGTTTGATCCCGCGACTAGAGCCCGCGTGGATGTTGTGC
GTGGGTGACACTGAGTCCAACTTAATACGCTGCTCACTGTGCGGATCCAT
GCCAAGCTCCCGATTGAGATCCCTTTGCTGTTGCTGCTGCTGCTGCATTG
CCACTGCTGCGGCGGCCACTCTGGCTTGCTGTATCAGCGCCATTTGGCGG
ATCATATACACGGAGG
BS04470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6352-PA | 1149 | OdsH-RA | 200..1149 | 966..17 | 4750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 257..1206 | 966..17 | 4750 | 100 | Minus |
unc-4-RC | 2995 | CG6269-RC | 1104..1339 | 679..444 | 400 | 78 | Minus |
unc-4-RB | 2866 | CG6269-RB | 1104..1339 | 679..444 | 400 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17813529..17813928 | 416..17 | 2000 | 100 | Minus |
X | 23542271 | X | 17811680..17811909 | 784..555 | 1150 | 100 | Minus |
X | 23542271 | X | 17791266..17791449 | 966..783 | 920 | 100 | Minus |
X | 23542271 | X | 17813309..17813449 | 557..417 | 705 | 100 | Minus |
X | 23542271 | X | 17776415..17776528 | 557..444 | 240 | 80.7 | Minus |
X | 23542271 | X | 17776153..17776243 | 679..589 | 230 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:51:26 has no hits.
BS04470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:17 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 200..1149 | 17..966 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:03 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 200..1149 | 17..966 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:09:12 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 257..1206 | 17..966 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:24 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 257..1206 | 17..966 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:24 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17811681..17811907 | 557..783 | 100 | -> | Minus |
X | 17813310..17813449 | 417..556 | 100 | -> | Minus |
X | 17791266..17791448 | 784..966 | 100 | -> | Minus |
X | 17813529..17813928 | 17..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:09:12 Download gff for
BS04470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685299..17685481 | 784..966 | 100 | -> | Minus |
arm_X | 17705714..17705940 | 557..783 | 100 | -> | Minus |
arm_X | 17707343..17707482 | 417..556 | 100 | -> | Minus |
arm_X | 17707562..17707961 | 17..416 | 100 | | Minus |
BS04470.5prime Sequence
909 bp (754 high quality bases) assembled on 2005-12-01
> BS04470.5prime
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAACTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAAACGGAGTGGATG
AAAATAACT
BS04470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6352-PA | 1149 | OdsH-RA | 1..872 | 17..888 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 58..949 | 17..909 | 4410 | 99.7 | Plus |
unc-4-RC | 2995 | CG6269-RC | 1104..1432 | 503..831 | 415 | 75.1 | Plus |
unc-4-RB | 2866 | CG6269-RB | 1104..1432 | 503..831 | 415 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17791067..17791449 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 17811680..17811909 | 398..627 | 1150 | 100 | Plus |
X | 23542271 | X | 17813309..17813449 | 625..765 | 705 | 100 | Plus |
X | 23542271 | X | 17813529..17813671 | 766..909 | 640 | 97.9 | Plus |
X | 23542271 | X | 17776415..17776528 | 625..738 | 240 | 80.7 | Plus |
X | 23542271 | X | 17776153..17776243 | 503..593 | 230 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:18:01 has no hits.
BS04470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:19 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:05 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:47 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 50..949 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:26 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 50..949 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:26 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17791059..17791448 | 10..398 | 99 | -> | Plus |
X | 17811681..17811907 | 399..625 | 100 | -> | Plus |
X | 17813310..17813449 | 626..765 | 100 | -> | Plus |
X | 17813529..17813671 | 766..909 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:47 Download gff for
BS04470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685092..17685481 | 10..398 | 99 | -> | Plus |
arm_X | 17705714..17705940 | 399..625 | 100 | -> | Plus |
arm_X | 17707343..17707482 | 626..765 | 100 | -> | Plus |
arm_X | 17707562..17707704 | 766..909 | 97 | | Plus |
BS04470.complete Sequence
1181 bp (1181 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634952
> BS04470.complete
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAACGGAGTGGATGA
GAATAACTGGCTGGATGATGATGGCTACGATGATCTGCACATCGATGTGG
TGGGCGTTGAACCGGAGTACGTGACCGGCGACAGTTTGGATCACTCGTTC
TGCTCCTCCAGGACGTACCAGACGAAGAGCACCAGCAGCGAACTGGATTC
CAATGATATGGGACTCCAGGGAAGAGTGGAAACTCCGCCACCACCACAGC
CACCGATGCAGAATAAGACCCTCTACAATTCGCCCTTCAGCATCGAATCC
CTGTTGGGATCGTAAAAGCTTTCTAGACCAT
BS04470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1149 | CG6352-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
unc-4-RC | 1767 | CG6269-PC | 742..977 | 503..738 | 400 | 78 | Plus |
unc-4-RB | 1767 | CG6269-PB | 742..977 | 503..738 | 400 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 58..1206 | 17..1165 | 5745 | 100 | Plus |
unc-4-RC | 2995 | CG6269-RC | 1104..1339 | 503..738 | 400 | 78 | Plus |
unc-4-RB | 2866 | CG6269-RB | 1104..1339 | 503..738 | 400 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17813529..17813928 | 766..1165 | 2000 | 100 | Plus |
X | 23542271 | X | 17791067..17791449 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 17811680..17811909 | 398..627 | 1150 | 100 | Plus |
X | 23542271 | X | 17813309..17813449 | 625..765 | 705 | 100 | Plus |
X | 23542271 | X | 17776415..17776528 | 625..738 | 240 | 80.7 | Plus |
X | 23542271 | X | 17776153..17776243 | 503..593 | 230 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:40 has no hits.
BS04470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:08 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:23 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 18..1164 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:04 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 58..1204 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:08 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 10..1166 | 10..1165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:02 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 58..1204 | 17..1163 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:02 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17813529..17813926 | 766..1163 | 100 | | Plus |
X | 17791067..17791448 | 17..398 | 100 | -> | Plus |
X | 17811681..17811907 | 399..625 | 100 | -> | Plus |
X | 17813310..17813449 | 626..765 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:04 Download gff for
BS04470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685100..17685481 | 17..398 | 100 | -> | Plus |
arm_X | 17705714..17705940 | 399..625 | 100 | -> | Plus |
arm_X | 17707343..17707482 | 626..765 | 100 | -> | Plus |
arm_X | 17707562..17707959 | 766..1163 | 100 | | Plus |
BS04470.pep Sequence
Translation from 16 to 1164
> BS04470.pep
MDQLIQQLQQAAAARGQVQHPHGSSALQLYAAAAAVNMQVSGWSSVLNLS
MDAPNPEISPNSVTNSSSVYMIRQMALIQQARVAAAAVAMQQQQQQQRDL
NRELGMDPHSEQRIKLDSVSPTHNIHAGSSRGIKQDPLSDEGADSNLGQN
DCTESSKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEG
RIAVWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRAREL
AQRSKRMKKAIDRQAKKLQDKGLEVDYARLEAEYLAAHQENGVDENNWLD
DDGYDDLHIDVVGVEPEYVTGDSLDHSFCSSRTYQTKSTSSELDSNDMGL
QGRVETPPPPQPPMQNKTLYNSPFSIESLLGS*
BS04470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-PA | 382 | CG6352-PA | 1..382 | 1..382 | 1986 | 100 | Plus |
unc-4-PC | 588 | CG6269-PC | 92..405 | 22..323 | 599 | 44.2 | Plus |
unc-4-PB | 588 | CG6269-PB | 92..405 | 22..323 | 599 | 44.2 | Plus |
Rx-PB | 904 | CG10052-PB | 432..621 | 52..220 | 259 | 34.6 | Plus |
al-PA | 408 | CG3935-PA | 56..156 | 127..231 | 238 | 48.6 | Plus |