Clone BS04471 Report

Search the DGRC for BS04471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptH15-RA
Protein status:BS04471.pep: full length peptide match
Sequenced Size:2015

Clone Sequence Records

BS04471.3prime Sequence

915 bp (766 high quality bases) assembled on 2005-12-01

> BS04471.3prime
ATGGTCTAGAAAGCTTCTATGGACTTTCTGCTCGATTGGAGGCTGGTGGC
GATGCCTGATGCTGGGGCACCTGATACGGACTGAACCGCTGAGGATAATG
ATTCAGTTGGGGTCTGGCCCTCAGATCCGGAGAGGCGGAACCGCACGAGG
AGGTGGGCGTGGCAGGAGCTGGTGGCGCCACCGCCATCGAAGGTGGTGGC
GTTCGATTGGCGCCCGCTGCTGCCAAGGCCAAGGCCGCCTGCTGATTGGC
GCTGGCCAGGAATCCGGCGGTGAGTTGGGGCCACTGCTGCTGCCACATTC
CCAGCTGAAAGGCGCTGAGGTGGGGGGCCGGTGGGGGCGGCGGCGGTGCC
GCCGATCGCTGATACAGATGTGGCAGCAACATCTCCGTGTACGGCGATCG
TCCAAACATCTGCAAGTGCTGGCGGGCTTTCTCCAACAGCGCCATTGATG
CGGCATCTGCCTCCTGAGGAGTCAATTGGGACATCAGCGGATCGGGAAAG
AATCGCAGGGGAGCAGTACGCATGTGCTGGTCGAAGAAGAACGCATCCAT
GGGATCCCTATCAAAGTCACTGAGACGCGACGAATCGCGAAATCCCTTCG
CAAACGGATTCGAATCGATTTTCAGTTTCGTAATCAATTGATTCTGATAG
GCCGTCACGGCCGTGAATACGGTCTCCGGGAAAACGAAGGTTTTATGGTC
CATATCCTGCAGCTCCTTGGGACTGCCGGGTATGCTCTGGCCATGGCTCA
ACCGGACCAAGTGGATCCTGGGCTGGTAGCGGTGCATTGAGTTCAGCACG
ACCTGTCCGCTCTTGTCCATCTCGTTGTTTGTCAACTTCACCTTTTCGAA
AGAGACGACCTGTTTTCGCAGTGCCTCCGGACTCAGAGGACAATCCGGAT
GGGCGTAAATGGCGG

BS04471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6604-PA 1983 H15-RA 1089..1983 911..17 4450 99.8 Minus
CG6634-PA 1743 mid-RA 1429..1481 292..240 165 92.4 Minus
CG6634-PA 1743 mid-RA 877..995 850..732 145 84.8 Minus
CG6634-PA 1743 mid-RA 1045..1088 682..639 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RB 2926 CG6604-RB 1333..2227 911..17 4460 99.9 Minus
H15-RA 2617 CG6604-RA 1689..2583 911..17 4460 99.9 Minus
mid-RA 2920 CG6634-RA 1129..1767 877..233 850 76.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5415352..5415894 559..17 2715 100 Minus
2L 23513712 2L 5413962..5414210 805..557 1245 100 Minus
2L 23513712 2L 5465891..5466288 805..402 585 77.5 Minus
2L 23513712 2L 5413189..5413299 911..801 540 99.1 Minus
2L 23513712 2L 5466398..5466457 292..233 210 90 Minus
Blast to na_te.dros performed on 2015-02-11 23:54:08 has no hits.

BS04471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:20 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-PA 1086..1983 17..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:06 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6604-PA 1086..1983 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:57:59 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 1686..2583 17..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:06 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 1686..2583 17..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:06 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5413186..5413297 803..915 98 -> Minus
2L 5413965..5414209 558..802 100 -> Minus
2L 5415354..5415894 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:57:59 Download gff for BS04471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5413965..5414209 558..802 100 -> Minus
arm_2L 5413186..5413297 803..915 98 -> Minus
arm_2L 5415354..5415894 17..557 100   Minus

BS04471.5prime Sequence

890 bp (818 high quality bases) assembled on 2005-12-01

> BS04471.5prime
GAAGTTATCAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAAC
CGCAGCAAACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTG
CAGCAGCAGATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAA
CGGCAGCAGCCATCATCATCATCATCAGAACCATCATCATCACCATCCGC
TGAACAACCATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCC
ACGGATTTCTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAG
CAGCCGCGAACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCT
ATTCAGGCCAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGC
AGTGACTCGGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAAC
AACAGCAGCGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTC
AGGCATTGCGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGG
CAGCAGACACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCA
CAATCATCACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCA
ACACCAACAGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTG
GGAGCCGCTGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCC
GGAGGAACTCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCA
CGCCCAAGATAGTGGGCTCGTGCAGCTGCGACGATCTCACGCCCGTCCAG
TGCCACCTGGAGACCAAGGAGCTGTGGGGATAGTTTCCTG

BS04471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6604-PA 1983 H15-RA 1..862 17..878 4285 99.8 Plus
CG6634-PA 1743 mid-RA 205..236 371..402 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 2617 CG6604-RA 601..1462 17..878 4295 99.9 Plus
H15-RB 2926 CG6604-RB 248..1106 17..878 4240 99.5 Plus
mid-RA 2920 CG6634-RA 793..868 803..878 200 84.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5406911..5407374 330..793 2320 100 Plus
2L 23513712 2L 5404880..5405194 17..331 1575 100 Plus
2L 23513712 2L 5407681..5407768 791..878 425 98.9 Plus
2L 23513712 2L 5464145..5464220 803..878 200 84.2 Plus
Blast to na_te.dros performed on 2015-02-13 09:04:21 has no hits.

BS04471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:21 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:08 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6604-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:59 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..1474 17..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:33:00 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..1474 17..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:33:00 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5404880..5405192 17..329 100 -> Plus
2L 5406911..5407374 330..793 100 -> Plus
2L 5407684..5407780 794..890 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:59 Download gff for BS04471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5404880..5405192 17..329 100 -> Plus
arm_2L 5406911..5407374 330..793 100 -> Plus
arm_2L 5407684..5407780 794..890 94   Plus

BS04471.complete Sequence

2015 bp assembled on 2008-08-15

GenBank Submission: KX794540

> BS04471.complete
GAAGTTATCAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAAC
CGCAGCAAACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTG
CAGCAGCAGATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAA
CGGCAGCAGCCATCATCATCATCATCAGAACCATCATCATCACCATCCGC
TGAACAACCATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCC
ACGGATTTCTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAG
CAGCCGCGAACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCT
ATTCAGGCCAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGC
AGTGACTCGGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAAC
AACAGCAGCGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTC
AGGCATTGCGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGG
CAGCAGACACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCA
CAATCATCACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCA
ACACCAACAGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTG
GGAGCCGCTGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCC
GGAGGAACTCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCA
CGCCCAAGATAGTGGGCTCGTGCAACTGCGACGATCTCACGCCCGTCCAG
TGCCACCTGGAGACCAAGGAGCTGTGGGATAAGTTCCATGAATTGGGCAC
TGAAATGATCATTACCAAATCGGGCAGACGCATGTTTCCCACCGTTCGAG
TGAGTTTCTCGGGTCCTTTGCGGCAAATTCAGCCAGCTGACCGATATGCC
GTACTTTTGGATGTGGTACCACTTGATTCGCGGCGATACCGTTACGCCTA
CCATCGCAGTTCGTGGCTGGTAGCCGGAAAGGCGGATCCGCCGCCACCCT
CCCGCATTTACGCCCATCCGGATTGTCCTCTGAGTCCGGAGGCACTGCGA
AAACAGGTCGTCTCCTTCGAAAAGGTGAAGTTGACAAACAACGAGATGGA
CAAGAGCGGACAGGTCGTGCTGAACTCAATGCACCGCTACCAGCCCAGGA
TCCACTTGGTCCGGTTGAGCCATGGCCAGAGCATACCCGGCAGTCCCAAG
GAGCTGCAGGATATGGACCATAAAACCTTCGTTTTCCCGGAGACCGTATT
CACGGCCGTGACGGCCTATCAGAATCAATTGATTACGAAACTGAAAATCG
ATTCGAATCCGTTTGCGAAGGGATTTCGCGATTCGTCGCGTCTCAGTGAC
TTTGATAGGGATCCCATGGATGCGTTCTTCTTCGACCAGCACATGCGTAC
TGCTCCCCTGCGATTCTTTCCCGATCCGCTGATGTCCCAATTGACTCCTC
AGGAGGCAGATGCCGCATCAATGGCGCTGTTGGAGAAAGCCCGCCAGCAC
TTGCAGATGTTTGGACGATCGCCGTACACGGAGATGTTGCTGCCACATCT
GTATCAGCGATCGGCGGCACCGCCGCCGCCCCCACCGGCCCCCCACCTCA
GCGCCTTTCAGCTGGGAATGTGGCAGCAGCAGTGGCCCCAACTCACCGCC
GGATTCCTGGCCAGCGCCAATCAGCAGGCGGCCTTGGCCTTGGCAGCAGC
GGGCGCCAATCGAACGCCACCACCTTCGATGGCGGTGGCGCCACCAGCTC
CTGCCACGCCCACCTCCTCGTGCGGTTCCGCCTCTCCGGATCTGAGGGCC
AGACCCCAACTGAATCATTATCCTCAGCGGTTCAGTCCGTATCAGGTGCC
CCAGCATCAGGCATCGCCACCAGCCTCCAATCGAGCAGAAAGTCCATAGA
AGCTTTCTAGACCAT

BS04471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 1983 CG6604-PA 1..1983 17..1999 9915 100 Plus
H15-RB 1980 CG6604-PB 1..1980 17..1999 9835 99.8 Plus
mid-RA 1743 CG6634-PA 514..1319 803..1614 1200 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 2617 CG6604-RA 601..2583 17..1999 9915 100 Plus
H15-RB 2926 CG6604-RB 248..2227 17..1999 9835 99.8 Plus
mid-RA 2920 CG6634-RA 793..1598 803..1614 1200 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5415352..5415894 1457..1999 2715 100 Plus
2L 23513712 2L 5406911..5407374 330..793 2320 100 Plus
2L 23513712 2L 5404880..5405194 17..331 1575 100 Plus
2L 23513712 2L 5413009..5413299 925..1215 1455 100 Plus
2L 23513712 2L 5413962..5414210 1211..1459 1245 100 Plus
2L 23513712 2L 5407681..5407817 791..927 685 100 Plus
2L 23513712 2L 5465891..5466288 1211..1614 585 77.5 Plus
2L 23513712 2L 5465217..5465507 925..1215 375 75.3 Plus
2L 23513712 2L 5464145..5464269 803..927 280 81.6 Plus
X 23542271 X 8451685..8451770 942..857 250 86 Minus
2L 23513712 2L 5466398..5466457 1724..1783 210 90 Plus
Blast to na_te.dros performed on 2014-11-28 01:10:42 has no hits.

BS04471.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:23 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 539..2521 17..1999 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:15 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..2583 17..1999 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:50 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 539..2521 17..1999 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:37 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..2583 17..1999 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:37 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5404880..5405192 17..329 100 -> Plus
2L 5406911..5407374 330..793 100 -> Plus
2L 5407684..5407817 794..927 100 -> Plus
2L 5413012..5413297 928..1213 100 -> Plus
2L 5413965..5414209 1214..1458 100 -> Plus
2L 5415354..5415894 1459..1999 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:15 Download gff for BS04471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5404880..5405192 17..329 100 -> Plus
arm_2L 5406911..5407374 330..793 100 -> Plus
arm_2L 5407684..5407817 794..927 100 -> Plus
arm_2L 5413012..5413297 928..1213 100 -> Plus
arm_2L 5413965..5414209 1214..1458 100 -> Plus
arm_2L 5415354..5415894 1459..1999 100   Plus

BS04471.pep Sequence

Translation from 16 to 1998

> BS04471.pep
MLLSNQPANTKPQQTPSPSQTQNFKSKLQQQIVSAAAAAAANIANGSSHH
HHHQNHHHHHPLNNHHNHNHNQHNISFATDFSIAAIMARGGNAPSSREPS
ERSLSPASVERYSGQDADDDVDVDVVDCSDSEMPSATAAAAAAATTAAAA
AAALQAQQQARQALRVAQQQQQQQQQQRQQTHHHATTGKQQRQHHNHHSS
NTNNSSNSGNSNTNSKSSSQRGRSAAAVGAAATPSPPPPPPSQSPEELER
LSPEESPAQQPTPKIVGSCNCDDLTPVQCHLETKELWDKFHELGTEMIIT
KSGRRMFPTVRVSFSGPLRQIQPADRYAVLLDVVPLDSRRYRYAYHRSSW
LVAGKADPPPPSRIYAHPDCPLSPEALRKQVVSFEKVKLTNNEMDKSGQV
VLNSMHRYQPRIHLVRLSHGQSIPGSPKELQDMDHKTFVFPETVFTAVTA
YQNQLITKLKIDSNPFAKGFRDSSRLSDFDRDPMDAFFFDQHMRTAPLRF
FPDPLMSQLTPQEADAASMALLEKARQHLQMFGRSPYTEMLLPHLYQRSA
APPPPPPAPHLSAFQLGMWQQQWPQLTAGFLASANQQAALALAAAGANRT
PPPSMAVAPPAPATPTSSCGSASPDLRARPQLNHYPQRFSPYQVPQHQAS
PPASNRAESP*

BS04471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
H15-PA 660 CG6604-PA 1..660 1..660 3483 100 Plus
H15-PB 659 CG6604-PB 1..659 1..660 3466 99.8 Plus
mid-PA 580 CG6634-PA 38..578 78..660 1707 60.5 Plus
mid-PB 580 CG6634-PB 38..578 78..660 1707 60.5 Plus
org-1-PB 699 CG11202-PB 81..507 180..649 595 34.3 Plus