Clone Sequence Records
BS04471.3prime Sequence
915 bp (766 high quality bases) assembled on 2005-12-01
> BS04471.3prime
ATGGTCTAGAAAGCTTCTATGGACTTTCTGCTCGATTGGAGGCTGGTGGC
GATGCCTGATGCTGGGGCACCTGATACGGACTGAACCGCTGAGGATAATG
ATTCAGTTGGGGTCTGGCCCTCAGATCCGGAGAGGCGGAACCGCACGAGG
AGGTGGGCGTGGCAGGAGCTGGTGGCGCCACCGCCATCGAAGGTGGTGGC
GTTCGATTGGCGCCCGCTGCTGCCAAGGCCAAGGCCGCCTGCTGATTGGC
GCTGGCCAGGAATCCGGCGGTGAGTTGGGGCCACTGCTGCTGCCACATTC
CCAGCTGAAAGGCGCTGAGGTGGGGGGCCGGTGGGGGCGGCGGCGGTGCC
GCCGATCGCTGATACAGATGTGGCAGCAACATCTCCGTGTACGGCGATCG
TCCAAACATCTGCAAGTGCTGGCGGGCTTTCTCCAACAGCGCCATTGATG
CGGCATCTGCCTCCTGAGGAGTCAATTGGGACATCAGCGGATCGGGAAAG
AATCGCAGGGGAGCAGTACGCATGTGCTGGTCGAAGAAGAACGCATCCAT
GGGATCCCTATCAAAGTCACTGAGACGCGACGAATCGCGAAATCCCTTCG
CAAACGGATTCGAATCGATTTTCAGTTTCGTAATCAATTGATTCTGATAG
GCCGTCACGGCCGTGAATACGGTCTCCGGGAAAACGAAGGTTTTATGGTC
CATATCCTGCAGCTCCTTGGGACTGCCGGGTATGCTCTGGCCATGGCTCA
ACCGGACCAAGTGGATCCTGGGCTGGTAGCGGTGCATTGAGTTCAGCACG
ACCTGTCCGCTCTTGTCCATCTCGTTGTTTGTCAACTTCACCTTTTCGAA
AGAGACGACCTGTTTTCGCAGTGCCTCCGGACTCAGAGGACAATCCGGAT
GGGCGTAAATGGCGG
BS04471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6604-PA | 1983 | H15-RA | 1089..1983 | 911..17 | 4450 | 99.8 | Minus |
CG6634-PA | 1743 | mid-RA | 1429..1481 | 292..240 | 165 | 92.4 | Minus |
CG6634-PA | 1743 | mid-RA | 877..995 | 850..732 | 145 | 84.8 | Minus |
CG6634-PA | 1743 | mid-RA | 1045..1088 | 682..639 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
H15-RB | 2926 | CG6604-RB | 1333..2227 | 911..17 | 4460 | 99.9 | Minus |
H15-RA | 2617 | CG6604-RA | 1689..2583 | 911..17 | 4460 | 99.9 | Minus |
mid-RA | 2920 | CG6634-RA | 1129..1767 | 877..233 | 850 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5415352..5415894 | 559..17 | 2715 | 100 | Minus |
2L | 23513712 | 2L | 5413962..5414210 | 805..557 | 1245 | 100 | Minus |
2L | 23513712 | 2L | 5465891..5466288 | 805..402 | 585 | 77.5 | Minus |
2L | 23513712 | 2L | 5413189..5413299 | 911..801 | 540 | 99.1 | Minus |
2L | 23513712 | 2L | 5466398..5466457 | 292..233 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:54:08 has no hits.
BS04471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:20 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-PA | 1086..1983 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:06 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6604-PA | 1086..1983 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:57:59 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 1686..2583 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:06 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 1686..2583 | 17..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:06 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5413186..5413297 | 803..915 | 98 | -> | Minus |
2L | 5413965..5414209 | 558..802 | 100 | -> | Minus |
2L | 5415354..5415894 | 17..557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:57:59 Download gff for
BS04471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5413965..5414209 | 558..802 | 100 | -> | Minus |
arm_2L | 5413186..5413297 | 803..915 | 98 | -> | Minus |
arm_2L | 5415354..5415894 | 17..557 | 100 | | Minus |
BS04471.5prime Sequence
890 bp (818 high quality bases) assembled on 2005-12-01
> BS04471.5prime
GAAGTTATCAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAAC
CGCAGCAAACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTG
CAGCAGCAGATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAA
CGGCAGCAGCCATCATCATCATCATCAGAACCATCATCATCACCATCCGC
TGAACAACCATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCC
ACGGATTTCTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAG
CAGCCGCGAACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCT
ATTCAGGCCAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGC
AGTGACTCGGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAAC
AACAGCAGCGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTC
AGGCATTGCGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGG
CAGCAGACACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCA
CAATCATCACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCA
ACACCAACAGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTG
GGAGCCGCTGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCC
GGAGGAACTCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCA
CGCCCAAGATAGTGGGCTCGTGCAGCTGCGACGATCTCACGCCCGTCCAG
TGCCACCTGGAGACCAAGGAGCTGTGGGGATAGTTTCCTG
BS04471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6604-PA | 1983 | H15-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
CG6634-PA | 1743 | mid-RA | 205..236 | 371..402 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
H15-RA | 2617 | CG6604-RA | 601..1462 | 17..878 | 4295 | 99.9 | Plus |
H15-RB | 2926 | CG6604-RB | 248..1106 | 17..878 | 4240 | 99.5 | Plus |
mid-RA | 2920 | CG6634-RA | 793..868 | 803..878 | 200 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5406911..5407374 | 330..793 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 5404880..5405194 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 5407681..5407768 | 791..878 | 425 | 98.9 | Plus |
2L | 23513712 | 2L | 5464145..5464220 | 803..878 | 200 | 84.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:04:21 has no hits.
BS04471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:21 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:08 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6604-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:59 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 601..1474 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:33:00 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 601..1474 | 17..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:33:00 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5404880..5405192 | 17..329 | 100 | -> | Plus |
2L | 5406911..5407374 | 330..793 | 100 | -> | Plus |
2L | 5407684..5407780 | 794..890 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:59 Download gff for
BS04471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5404880..5405192 | 17..329 | 100 | -> | Plus |
arm_2L | 5406911..5407374 | 330..793 | 100 | -> | Plus |
arm_2L | 5407684..5407780 | 794..890 | 94 | | Plus |
BS04471.complete Sequence
2015 bp assembled on 2008-08-15
GenBank Submission: KX794540
> BS04471.complete
GAAGTTATCAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAAC
CGCAGCAAACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTG
CAGCAGCAGATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAA
CGGCAGCAGCCATCATCATCATCATCAGAACCATCATCATCACCATCCGC
TGAACAACCATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCC
ACGGATTTCTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAG
CAGCCGCGAACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCT
ATTCAGGCCAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGC
AGTGACTCGGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAAC
AACAGCAGCGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTC
AGGCATTGCGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGG
CAGCAGACACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCA
CAATCATCACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCA
ACACCAACAGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTG
GGAGCCGCTGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCC
GGAGGAACTCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCA
CGCCCAAGATAGTGGGCTCGTGCAACTGCGACGATCTCACGCCCGTCCAG
TGCCACCTGGAGACCAAGGAGCTGTGGGATAAGTTCCATGAATTGGGCAC
TGAAATGATCATTACCAAATCGGGCAGACGCATGTTTCCCACCGTTCGAG
TGAGTTTCTCGGGTCCTTTGCGGCAAATTCAGCCAGCTGACCGATATGCC
GTACTTTTGGATGTGGTACCACTTGATTCGCGGCGATACCGTTACGCCTA
CCATCGCAGTTCGTGGCTGGTAGCCGGAAAGGCGGATCCGCCGCCACCCT
CCCGCATTTACGCCCATCCGGATTGTCCTCTGAGTCCGGAGGCACTGCGA
AAACAGGTCGTCTCCTTCGAAAAGGTGAAGTTGACAAACAACGAGATGGA
CAAGAGCGGACAGGTCGTGCTGAACTCAATGCACCGCTACCAGCCCAGGA
TCCACTTGGTCCGGTTGAGCCATGGCCAGAGCATACCCGGCAGTCCCAAG
GAGCTGCAGGATATGGACCATAAAACCTTCGTTTTCCCGGAGACCGTATT
CACGGCCGTGACGGCCTATCAGAATCAATTGATTACGAAACTGAAAATCG
ATTCGAATCCGTTTGCGAAGGGATTTCGCGATTCGTCGCGTCTCAGTGAC
TTTGATAGGGATCCCATGGATGCGTTCTTCTTCGACCAGCACATGCGTAC
TGCTCCCCTGCGATTCTTTCCCGATCCGCTGATGTCCCAATTGACTCCTC
AGGAGGCAGATGCCGCATCAATGGCGCTGTTGGAGAAAGCCCGCCAGCAC
TTGCAGATGTTTGGACGATCGCCGTACACGGAGATGTTGCTGCCACATCT
GTATCAGCGATCGGCGGCACCGCCGCCGCCCCCACCGGCCCCCCACCTCA
GCGCCTTTCAGCTGGGAATGTGGCAGCAGCAGTGGCCCCAACTCACCGCC
GGATTCCTGGCCAGCGCCAATCAGCAGGCGGCCTTGGCCTTGGCAGCAGC
GGGCGCCAATCGAACGCCACCACCTTCGATGGCGGTGGCGCCACCAGCTC
CTGCCACGCCCACCTCCTCGTGCGGTTCCGCCTCTCCGGATCTGAGGGCC
AGACCCCAACTGAATCATTATCCTCAGCGGTTCAGTCCGTATCAGGTGCC
CCAGCATCAGGCATCGCCACCAGCCTCCAATCGAGCAGAAAGTCCATAGA
AGCTTTCTAGACCAT
BS04471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
H15-RA | 1983 | CG6604-PA | 1..1983 | 17..1999 | 9915 | 100 | Plus |
H15-RB | 1980 | CG6604-PB | 1..1980 | 17..1999 | 9835 | 99.8 | Plus |
mid-RA | 1743 | CG6634-PA | 514..1319 | 803..1614 | 1200 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
H15-RA | 2617 | CG6604-RA | 601..2583 | 17..1999 | 9915 | 100 | Plus |
H15-RB | 2926 | CG6604-RB | 248..2227 | 17..1999 | 9835 | 99.8 | Plus |
mid-RA | 2920 | CG6634-RA | 793..1598 | 803..1614 | 1200 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5415352..5415894 | 1457..1999 | 2715 | 100 | Plus |
2L | 23513712 | 2L | 5406911..5407374 | 330..793 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 5404880..5405194 | 17..331 | 1575 | 100 | Plus |
2L | 23513712 | 2L | 5413009..5413299 | 925..1215 | 1455 | 100 | Plus |
2L | 23513712 | 2L | 5413962..5414210 | 1211..1459 | 1245 | 100 | Plus |
2L | 23513712 | 2L | 5407681..5407817 | 791..927 | 685 | 100 | Plus |
2L | 23513712 | 2L | 5465891..5466288 | 1211..1614 | 585 | 77.5 | Plus |
2L | 23513712 | 2L | 5465217..5465507 | 925..1215 | 375 | 75.3 | Plus |
2L | 23513712 | 2L | 5464145..5464269 | 803..927 | 280 | 81.6 | Plus |
X | 23542271 | X | 8451685..8451770 | 942..857 | 250 | 86 | Minus |
2L | 23513712 | 2L | 5466398..5466457 | 1724..1783 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:42 has no hits.
BS04471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:23 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 539..2521 | 17..1999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:15 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 601..2583 | 17..1999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:50 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 539..2521 | 17..1999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:37 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
H15-RA | 601..2583 | 17..1999 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:37 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5404880..5405192 | 17..329 | 100 | -> | Plus |
2L | 5406911..5407374 | 330..793 | 100 | -> | Plus |
2L | 5407684..5407817 | 794..927 | 100 | -> | Plus |
2L | 5413012..5413297 | 928..1213 | 100 | -> | Plus |
2L | 5413965..5414209 | 1214..1458 | 100 | -> | Plus |
2L | 5415354..5415894 | 1459..1999 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:15 Download gff for
BS04471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5404880..5405192 | 17..329 | 100 | -> | Plus |
arm_2L | 5406911..5407374 | 330..793 | 100 | -> | Plus |
arm_2L | 5407684..5407817 | 794..927 | 100 | -> | Plus |
arm_2L | 5413012..5413297 | 928..1213 | 100 | -> | Plus |
arm_2L | 5413965..5414209 | 1214..1458 | 100 | -> | Plus |
arm_2L | 5415354..5415894 | 1459..1999 | 100 | | Plus |
BS04471.pep Sequence
Translation from 16 to 1998
> BS04471.pep
MLLSNQPANTKPQQTPSPSQTQNFKSKLQQQIVSAAAAAAANIANGSSHH
HHHQNHHHHHPLNNHHNHNHNQHNISFATDFSIAAIMARGGNAPSSREPS
ERSLSPASVERYSGQDADDDVDVDVVDCSDSEMPSATAAAAAAATTAAAA
AAALQAQQQARQALRVAQQQQQQQQQQRQQTHHHATTGKQQRQHHNHHSS
NTNNSSNSGNSNTNSKSSSQRGRSAAAVGAAATPSPPPPPPSQSPEELER
LSPEESPAQQPTPKIVGSCNCDDLTPVQCHLETKELWDKFHELGTEMIIT
KSGRRMFPTVRVSFSGPLRQIQPADRYAVLLDVVPLDSRRYRYAYHRSSW
LVAGKADPPPPSRIYAHPDCPLSPEALRKQVVSFEKVKLTNNEMDKSGQV
VLNSMHRYQPRIHLVRLSHGQSIPGSPKELQDMDHKTFVFPETVFTAVTA
YQNQLITKLKIDSNPFAKGFRDSSRLSDFDRDPMDAFFFDQHMRTAPLRF
FPDPLMSQLTPQEADAASMALLEKARQHLQMFGRSPYTEMLLPHLYQRSA
APPPPPPAPHLSAFQLGMWQQQWPQLTAGFLASANQQAALALAAAGANRT
PPPSMAVAPPAPATPTSSCGSASPDLRARPQLNHYPQRFSPYQVPQHQAS
PPASNRAESP*
BS04471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
H15-PA | 660 | CG6604-PA | 1..660 | 1..660 | 3483 | 100 | Plus |
H15-PB | 659 | CG6604-PB | 1..659 | 1..660 | 3466 | 99.8 | Plus |
mid-PA | 580 | CG6634-PA | 38..578 | 78..660 | 1707 | 60.5 | Plus |
mid-PB | 580 | CG6634-PB | 38..578 | 78..660 | 1707 | 60.5 | Plus |
org-1-PB | 699 | CG11202-PB | 81..507 | 180..649 | 595 | 34.3 | Plus |