Clone BS04472 Report

Search the DGRC for BS04472

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSox21a-RA
Protein status:BS04472.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04472.3prime Sequence

797 bp (759 high quality bases) assembled on 2005-12-01

> BS04472.3prime
ATGGTCTAGAAAGCTTTCAAATGATGTTTGGCGGACTGGCCGCGCTGGCC
ACTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGA
GATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTA
TCAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCC
TGGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTG
GGCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTG
GCGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACA
TGATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTG
GTGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACT
GGGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCG
GAGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACC
GCCGCCACCACCACCACCTGGCACCGGTGACTTGTTGAGCGTCTTGGGCT
TGCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCC
CGCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAG
TAATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTT
TTGGATTGTCCTGGGCCATTTTGCGACGCTGCCCCCGCGACCAGACC

BS04472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 387..1167 797..17 3905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 782..1562 797..17 3905 100 Minus
Sox21a-RA 2335 CG7345-RA 782..1562 797..17 3905 100 Minus
Sox21b-RC 3201 CG32139-RC 1634..1834 797..597 420 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14104254..14104888 17..651 3175 100 Plus
3L 28110227 3L 14106541..14106688 650..797 740 100 Plus
3L 28110227 3L 14176684..14176889 592..797 385 79.1 Plus
2L 23513712 2L 8827054..8827270 797..581 320 76.5 Minus
Blast to na_te.dros performed on 2015-02-10 22:32:27 has no hits.

BS04472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:22 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 387..1167 17..797 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:10 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 387..1167 17..797 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:26:57 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 782..1562 17..797 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:23 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 782..1562 17..797 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:23 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14104254..14104887 17..650 100 <- Plus
3L 14106542..14106688 651..797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:26:57 Download gff for BS04472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097354..14097987 17..650 100 <- Plus
arm_3L 14099642..14099788 651..797 100   Plus

BS04472.5prime Sequence

860 bp (759 high quality bases) assembled on 2005-12-01

> BS04472.5prime
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCGGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGG

BS04472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 1..844 17..860 4220 100 Plus
CG32139-PA 1716 Sox21b-RA 751..777 386..412 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 395..1239 16..860 4225 100 Plus
Sox21a-RA 2335 CG7345-RA 395..1239 16..860 4225 100 Plus
Sox21b-RC 3201 CG32139-RC 1605..1834 374..603 520 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14106541..14107075 550..16 2675 100 Minus
3L 28110227 3L 14104577..14104888 860..549 1560 100 Minus
3L 28110227 3L 14176684..14176918 608..374 485 80.4 Minus
2L 23513712 2L 8827031..8827270 380..619 375 77.1 Plus
3L 28110227 3L 14125085..14125194 483..374 250 81.8 Minus
Blast to na_te.dros performed on 2015-02-13 09:04:14 has no hits.

BS04472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:23 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..844 17..860 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:11 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..844 17..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:57 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 395..1239 16..860 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:32:41 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 395..1239 16..860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:32:41 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14104577..14104887 550..860 100 <- Minus
3L 14106542..14107075 16..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:57 Download gff for BS04472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097677..14097987 550..860 100 <- Minus
arm_3L 14099642..14100175 16..549 100   Minus

BS04472.complete Sequence

1199 bp (1199 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634953

> BS04472.complete
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCGGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGGCCGCCGCCACCTTGAGCGCCAAGTACGGTTTTGGTTCGCC
ACTGGAGTTATCGCTGCCCCGCCTGCCGAATGCCTTTCCCGGCCTCGCCC
ACTATCCACTGGATCCCACGTTGGCCCTGGACCTACAGGCGCGCCTCCAG
GCGATGTACGCCGGCTCCATCTACCACCCGTGGCGATATCTGCCGCTGAT
AAGTCCGGAAACTCCACCCTCCCCGCCCAGCAGCAGCGGTACCGGCATCT
CATCCTACGGATGCGTCAAGTCAGAGAAGTCCTCACCAAATGCGGTAGTG
GCCAGCGCGGCCAGTCCGCCAAACATCATTTGAAAGCTTTCTAGACCAT

BS04472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 1224 CG7345-PB 1..1167 17..1183 5835 100 Plus
Sox21a-RA 1167 CG7345-PA 1..1167 17..1183 5835 100 Plus
Sox21b-RC 1764 CG32139-PC 739..968 374..603 520 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 395..1562 16..1183 5840 100 Plus
Sox21a-RA 2335 CG7345-RA 395..1562 16..1183 5840 100 Plus
Sox21b-RC 3201 CG32139-RC 1605..1834 374..603 520 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14104254..14104888 1183..549 3175 100 Minus
3L 28110227 3L 14106541..14107075 550..16 2675 100 Minus
3L 28110227 3L 14176684..14176918 608..374 485 80.4 Minus
2L 23513712 2L 8827031..8827270 380..619 375 77.1 Plus
3L 28110227 3L 14125085..14125194 483..374 250 81.8 Minus
Blast to na_te.dros performed on 2014-11-27 01:02:38 has no hits.

BS04472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:09 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:18 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:05 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 396..1561 17..1182 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:10 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:02 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 396..1561 17..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:02 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14104255..14104887 550..1182 100 <- Minus
3L 14106542..14107074 17..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:05 Download gff for BS04472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097355..14097987 550..1182 100 <- Minus
arm_3L 14099642..14100174 17..549 100   Minus

BS04472.pep Sequence

Translation from 16 to 1182

> BS04472.pep
MTSISALLHRSHSHSNGYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLG
MGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMHQHTHHHGNSHH
NAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSE
ISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLN
KSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLG
QSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSL
PRLPNAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETP
PSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPPNII*

BS04472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-PA 388 CG7345-PA 1..388 1..388 2121 100 Plus
Sox21a-PB 407 CG7345-PB 1..388 1..388 2121 100 Plus
Sox21b-PB 571 CG32139-PB 112..332 8..205 455 46.8 Plus
Sox21b-PA 571 CG32139-PA 112..332 8..205 455 46.8 Plus
Sox21b-PC 587 CG32139-PC 112..332 8..205 455 46.8 Plus