Clone Sequence Records
BS04472.3prime Sequence
797 bp (759 high quality bases) assembled on 2005-12-01
> BS04472.3prime
ATGGTCTAGAAAGCTTTCAAATGATGTTTGGCGGACTGGCCGCGCTGGCC
ACTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGA
GATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTA
TCAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCC
TGGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTG
GGCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTG
GCGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACA
TGATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTG
GTGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACT
GGGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCG
GAGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACC
GCCGCCACCACCACCACCTGGCACCGGTGACTTGTTGAGCGTCTTGGGCT
TGCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCC
CGCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAG
TAATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTT
TTGGATTGTCCTGGGCCATTTTGCGACGCTGCCCCCGCGACCAGACC
BS04472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 387..1167 | 797..17 | 3905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 782..1562 | 797..17 | 3905 | 100 | Minus |
Sox21a-RA | 2335 | CG7345-RA | 782..1562 | 797..17 | 3905 | 100 | Minus |
Sox21b-RC | 3201 | CG32139-RC | 1634..1834 | 797..597 | 420 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14104254..14104888 | 17..651 | 3175 | 100 | Plus |
3L | 28110227 | 3L | 14106541..14106688 | 650..797 | 740 | 100 | Plus |
3L | 28110227 | 3L | 14176684..14176889 | 592..797 | 385 | 79.1 | Plus |
2L | 23513712 | 2L | 8827054..8827270 | 797..581 | 320 | 76.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:27 has no hits.
BS04472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:22 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 387..1167 | 17..797 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:10 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 387..1167 | 17..797 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:26:57 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 782..1562 | 17..797 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:23 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 782..1562 | 17..797 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:23 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104254..14104887 | 17..650 | 100 | <- | Plus |
3L | 14106542..14106688 | 651..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:26:57 Download gff for
BS04472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097354..14097987 | 17..650 | 100 | <- | Plus |
arm_3L | 14099642..14099788 | 651..797 | 100 | | Plus |
BS04472.5prime Sequence
860 bp (759 high quality bases) assembled on 2005-12-01
> BS04472.5prime
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCGGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGG
BS04472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
CG32139-PA | 1716 | Sox21b-RA | 751..777 | 386..412 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 395..1239 | 16..860 | 4225 | 100 | Plus |
Sox21a-RA | 2335 | CG7345-RA | 395..1239 | 16..860 | 4225 | 100 | Plus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 374..603 | 520 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14106541..14107075 | 550..16 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14104577..14104888 | 860..549 | 1560 | 100 | Minus |
3L | 28110227 | 3L | 14176684..14176918 | 608..374 | 485 | 80.4 | Minus |
2L | 23513712 | 2L | 8827031..8827270 | 380..619 | 375 | 77.1 | Plus |
3L | 28110227 | 3L | 14125085..14125194 | 483..374 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:04:14 has no hits.
BS04472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:23 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:11 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:57 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 395..1239 | 16..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:32:41 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 395..1239 | 16..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:32:41 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104577..14104887 | 550..860 | 100 | <- | Minus |
3L | 14106542..14107075 | 16..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:57 Download gff for
BS04472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097677..14097987 | 550..860 | 100 | <- | Minus |
arm_3L | 14099642..14100175 | 16..549 | 100 | | Minus |
BS04472.complete Sequence
1199 bp (1199 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634953
> BS04472.complete
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCGGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGGCCGCCGCCACCTTGAGCGCCAAGTACGGTTTTGGTTCGCC
ACTGGAGTTATCGCTGCCCCGCCTGCCGAATGCCTTTCCCGGCCTCGCCC
ACTATCCACTGGATCCCACGTTGGCCCTGGACCTACAGGCGCGCCTCCAG
GCGATGTACGCCGGCTCCATCTACCACCCGTGGCGATATCTGCCGCTGAT
AAGTCCGGAAACTCCACCCTCCCCGCCCAGCAGCAGCGGTACCGGCATCT
CATCCTACGGATGCGTCAAGTCAGAGAAGTCCTCACCAAATGCGGTAGTG
GCCAGCGCGGCCAGTCCGCCAAACATCATTTGAAAGCTTTCTAGACCAT
BS04472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 1224 | CG7345-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Sox21a-RA | 1167 | CG7345-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Sox21b-RC | 1764 | CG32139-PC | 739..968 | 374..603 | 520 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 395..1562 | 16..1183 | 5840 | 100 | Plus |
Sox21a-RA | 2335 | CG7345-RA | 395..1562 | 16..1183 | 5840 | 100 | Plus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 374..603 | 520 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14104254..14104888 | 1183..549 | 3175 | 100 | Minus |
3L | 28110227 | 3L | 14106541..14107075 | 550..16 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14176684..14176918 | 608..374 | 485 | 80.4 | Minus |
2L | 23513712 | 2L | 8827031..8827270 | 380..619 | 375 | 77.1 | Plus |
3L | 28110227 | 3L | 14125085..14125194 | 483..374 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:02:38 has no hits.
BS04472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:09 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:18 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:05 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 396..1561 | 17..1182 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:10 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:02 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 396..1561 | 17..1182 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:02 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104255..14104887 | 550..1182 | 100 | <- | Minus |
3L | 14106542..14107074 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:05 Download gff for
BS04472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097355..14097987 | 550..1182 | 100 | <- | Minus |
arm_3L | 14099642..14100174 | 17..549 | 100 | | Minus |
BS04472.pep Sequence
Translation from 16 to 1182
> BS04472.pep
MTSISALLHRSHSHSNGYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLG
MGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMHQHTHHHGNSHH
NAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSE
ISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLN
KSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLG
QSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSL
PRLPNAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETP
PSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPPNII*
BS04472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-PA | 388 | CG7345-PA | 1..388 | 1..388 | 2121 | 100 | Plus |
Sox21a-PB | 407 | CG7345-PB | 1..388 | 1..388 | 2121 | 100 | Plus |
Sox21b-PB | 571 | CG32139-PB | 112..332 | 8..205 | 455 | 46.8 | Plus |
Sox21b-PA | 571 | CG32139-PA | 112..332 | 8..205 | 455 | 46.8 | Plus |
Sox21b-PC | 587 | CG32139-PC | 112..332 | 8..205 | 455 | 46.8 | Plus |