Clone Sequence Records
BS04474.3prime Sequence
908 bp (887 high quality bases) assembled on 2005-12-01
> BS04474.3prime
ATGGTCTAGAAAGCTTTTAGTTGACTACCTCAACGCTGTCTTCCTCCTCT
TGCTCCTCCTCCGCCTCGGCGGGATCCTCATCCTCTGGCGTTTCCAAGGG
TGGAGCAACTGGACTATCCTGGCTGCTCTCGCAGGAACTGGATTCCAGGC
ACTCCAGACGGTTGCTATCCAGTCGGAGTCGTTTCTCCGGCTTCTTGAGC
AGTTCTTCGATGGAGTACGGATTCCGCTTGCGGCTGTGGCTGAGTGTCGA
TCCTGGTGAAGCCTCTGGAGCTGATCCGGCGCCATTTCCACCTCCAGAAG
CGGTTAGTGAGAGTGCCGCCGGGGAGGATTTACCGGAGTCGCAGTCGCTA
AGCGCATCGCCAGCCGCTCCGGGAGTCGAAAGATCGATGGAGCTCTCCGA
CTTGGTGAAACCACCCAAGGCGGATGTGGAAGATGCGGCCGCCGCTGCCA
TGGCATGGGGCAAATAGCCACCGGCATAGGGCAGGAATTGACCACCCGAC
GCAGCCGCCTGGGCCTGAATGTGAGCCTGGGTGTAGTAGAGCAGGGAGGG
ATTCCACAGCCAGTGCTTGTGTAGAGCGGAGTAACTCAAGTCCAGGCCCG
AAACATTGGGGTTCAGGCCGTGACTGTGGCCATGTCCCATGCTGGGCGGC
ATTTTGGGAGCGGGTTTAATTGGCATCTCGCCGGCGGAGTTCATCATCAA
CGCCGGCGGCTTGGCGTAGCGTGCGATGGAGGGCGTGGCTGCCGGTGTGG
GCGGAGCCACGGTTACCGGAGGAGGCGGAGCTTGGCCGCCATATCCATTC
GATGGACCACTGCCCGCCTGATGAGCCGCTGCCGCTGCCGCCGCTGCAGC
AGCTGCGGCATTCTGCTGACTGGATGTCATCTCATCGGTCCACAGACCGC
TGTTGCGC
BS04474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8246-PA | 1278 | Poxn-RA | 387..1278 | 908..17 | 4460 | 100 | Minus |
CG1070-PB | 2475 | Alh-RB | 1779..1805 | 854..828 | 135 | 100 | Minus |
CG1070-PC | 2931 | Alh-RC | 1779..1805 | 854..828 | 135 | 100 | Minus |
CG1070-PD | 3972 | Alh-RD | 3276..3302 | 854..828 | 135 | 100 | Minus |
CG1070-PA | 4131 | Alh-RA | 3435..3461 | 854..828 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Poxn-RB | 2458 | CG8246-RB | 1230..2122 | 908..16 | 4465 | 100 | Minus |
Poxn-RA | 2320 | CG8246-RA | 1092..1984 | 908..16 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15827029..15827921 | 16..908 | 4465 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:41:42 has no hits.
BS04474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:24 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-PA | 387..1278 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:12 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8246-PA | 387..1278 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:19 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 1092..1984 | 16..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:50 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 1092..1984 | 16..908 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:50 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15827029..15827921 | 16..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:19 Download gff for
BS04474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11714534..11715426 | 16..908 | 100 | | Plus |
BS04474.5prime Sequence
924 bp (811 high quality bases) assembled on 2005-12-01
> BS04474.5prime
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCCATCCGCCTTTGGGTGG
TTTCACCAAGTCGGAGAGCTTCCT
BS04474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8246-PA | 1278 | Poxn-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
CG8246-PA | 1278 | Poxn-RA | 877..904 | 893..920 | 140 | 100 | Plus |
CG1070-PB | 2475 | Alh-RB | 1779..1805 | 457..483 | 135 | 100 | Plus |
CG1070-PC | 2931 | Alh-RC | 1779..1805 | 457..483 | 135 | 100 | Plus |
CG1070-PD | 3972 | Alh-RD | 3276..3302 | 457..483 | 135 | 100 | Plus |
CG1070-PA | 4131 | Alh-RA | 3435..3461 | 457..483 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Poxn-RB | 2458 | CG8246-RB | 843..1747 | 16..920 | 4480 | 99.8 | Plus |
Poxn-RA | 2320 | CG8246-RA | 705..1609 | 16..920 | 4480 | 99.8 | Plus |
gsb-RA | 1649 | CG3388-RA | 344..454 | 134..244 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15827404..15828075 | 920..249 | 3265 | 99.7 | Minus |
2R | 25286936 | 2R | 15830314..15830457 | 171..28 | 720 | 100 | Minus |
2R | 25286936 | 2R | 15830166..15830246 | 250..170 | 405 | 100 | Minus |
2R | 25286936 | 2R | 25063338..25063448 | 134..244 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 01:51:53 has no hits.
BS04474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:25 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-PA | 1..906 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:14 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8246-PA | 1..906 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:36 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 698..1611 | 5..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:44 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 698..1611 | 5..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:44 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15827400..15828073 | 251..924 | 99 | <- | Minus |
2R | 15830166..15830245 | 171..250 | 100 | <- | Minus |
2R | 15830315..15830455 | 30..170 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:36 Download gff for
BS04474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11714905..11715578 | 251..924 | 99 | <- | Minus |
arm_2R | 11717671..11717750 | 171..250 | 100 | <- | Minus |
arm_2R | 11717820..11717960 | 30..170 | 100 | <- | Minus |
BS04474.complete Sequence
1310 bp (1310 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634954
> BS04474.complete
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCACATCCGCCTTGGGTGG
TTTCACCAAGTCGGAGAGCTCCATCGATCTTTCGACTCCCGGAGCGGCTG
GCGATGCGCTTAGCGACTGCGACTCCGGTAAATCCTCCCCGGCGGCACTC
TCACTAACCGCTTCTGGAGGTGGAAATGGCGCCGGATCAGCTCCAGAGGC
TTCACCAGGATCGACACTCAGCCACAGCCGCAAGCGGAATCCGTACTCCA
TCGAAGAACTGCTCAAGAAGCCGGAGAAACGACTCCGACTGGATAGCAAC
CGTCTGGAGTGCCTGGAATCCAGTTCCTGCGAGAGCAGCCAGGATAGTCC
AGTTGCTCCACCCTTGGAAACGCCAGAGGATGAGGATCCCGCCGAGGCGG
AGGAGGAGCAAGAGGAGGAAGACAGCGTTGAGGTAGTCAACTAAAAGCTT
TCTAGACCAT
BS04474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Poxn-RB | 1278 | CG8246-PB | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Poxn-RA | 1278 | CG8246-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
gsb-RA | 1284 | CG3388-PA | 160..270 | 134..244 | 210 | 79.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Poxn-RB | 2458 | CG8246-RB | 843..2122 | 16..1295 | 6400 | 100 | Plus |
Poxn-RA | 2320 | CG8246-RA | 705..1984 | 16..1295 | 6400 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 344..454 | 134..244 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15827029..15828075 | 1295..249 | 5235 | 100 | Minus |
2R | 25286936 | 2R | 15830314..15830457 | 171..28 | 720 | 100 | Minus |
2R | 25286936 | 2R | 15830166..15830246 | 250..170 | 405 | 100 | Minus |
2R | 25286936 | 2R | 25063338..25063448 | 134..244 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:15:32 has no hits.
BS04474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:51 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:56 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 556..1842 | 5..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:05 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 706..1981 | 17..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:51 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 556..1842 | 5..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:01 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Poxn-RA | 706..1981 | 17..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:01 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15827032..15828073 | 251..1292 | 100 | <- | Minus |
2R | 15830166..15830245 | 171..250 | 100 | <- | Minus |
2R | 15830315..15830457 | 28..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:05 Download gff for
BS04474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11717820..11717962 | 28..170 | 100 | | Minus |
arm_2R | 11714537..11715578 | 251..1292 | 100 | <- | Minus |
arm_2R | 11717671..11717750 | 171..250 | 100 | <- | Minus |
BS04474.pep Sequence
Translation from 16 to 1293
> BS04474.pep
MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVS
HGCVSKILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMF
AWEIREQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAA
AAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIARYAKPPALM
MNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPS
LLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSE
SSIDLSTPGAAGDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGST
LSHSRKRNPYSIEELLKKPEKRLRLDSNRLECLESSSCESSQDSPVAPPL
ETPEDEDPAEAEEEQEEEDSVEVVN*
BS04474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Poxn-PB | 425 | CG8246-PB | 1..425 | 1..425 | 2208 | 100 | Plus |
Poxn-PA | 425 | CG8246-PA | 1..425 | 1..425 | 2208 | 100 | Plus |
sv-PG | 628 | CG11049-PG | 175..344 | 5..175 | 449 | 55.6 | Plus |
sv-PC | 647 | CG11049-PC | 175..344 | 5..175 | 449 | 55.6 | Plus |
sv-PI | 491 | CG11049-PI | 17..188 | 3..175 | 447 | 54.9 | Plus |