Clone BS04474 Report

Search the DGRC for BS04474

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptPoxn-RA
Protein status:BS04474.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04474.3prime Sequence

908 bp (887 high quality bases) assembled on 2005-12-01

> BS04474.3prime
ATGGTCTAGAAAGCTTTTAGTTGACTACCTCAACGCTGTCTTCCTCCTCT
TGCTCCTCCTCCGCCTCGGCGGGATCCTCATCCTCTGGCGTTTCCAAGGG
TGGAGCAACTGGACTATCCTGGCTGCTCTCGCAGGAACTGGATTCCAGGC
ACTCCAGACGGTTGCTATCCAGTCGGAGTCGTTTCTCCGGCTTCTTGAGC
AGTTCTTCGATGGAGTACGGATTCCGCTTGCGGCTGTGGCTGAGTGTCGA
TCCTGGTGAAGCCTCTGGAGCTGATCCGGCGCCATTTCCACCTCCAGAAG
CGGTTAGTGAGAGTGCCGCCGGGGAGGATTTACCGGAGTCGCAGTCGCTA
AGCGCATCGCCAGCCGCTCCGGGAGTCGAAAGATCGATGGAGCTCTCCGA
CTTGGTGAAACCACCCAAGGCGGATGTGGAAGATGCGGCCGCCGCTGCCA
TGGCATGGGGCAAATAGCCACCGGCATAGGGCAGGAATTGACCACCCGAC
GCAGCCGCCTGGGCCTGAATGTGAGCCTGGGTGTAGTAGAGCAGGGAGGG
ATTCCACAGCCAGTGCTTGTGTAGAGCGGAGTAACTCAAGTCCAGGCCCG
AAACATTGGGGTTCAGGCCGTGACTGTGGCCATGTCCCATGCTGGGCGGC
ATTTTGGGAGCGGGTTTAATTGGCATCTCGCCGGCGGAGTTCATCATCAA
CGCCGGCGGCTTGGCGTAGCGTGCGATGGAGGGCGTGGCTGCCGGTGTGG
GCGGAGCCACGGTTACCGGAGGAGGCGGAGCTTGGCCGCCATATCCATTC
GATGGACCACTGCCCGCCTGATGAGCCGCTGCCGCTGCCGCCGCTGCAGC
AGCTGCGGCATTCTGCTGACTGGATGTCATCTCATCGGTCCACAGACCGC
TGTTGCGC

BS04474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8246-PA 1278 Poxn-RA 387..1278 908..17 4460 100 Minus
CG1070-PB 2475 Alh-RB 1779..1805 854..828 135 100 Minus
CG1070-PC 2931 Alh-RC 1779..1805 854..828 135 100 Minus
CG1070-PD 3972 Alh-RD 3276..3302 854..828 135 100 Minus
CG1070-PA 4131 Alh-RA 3435..3461 854..828 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 1230..2122 908..16 4465 100 Minus
Poxn-RA 2320 CG8246-RA 1092..1984 908..16 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827029..15827921 16..908 4465 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:41:42 has no hits.

BS04474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:24 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-PA 387..1278 17..908 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:12 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8246-PA 387..1278 17..908 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:19 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1092..1984 16..908 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:50 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1092..1984 16..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:50 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15827029..15827921 16..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:19 Download gff for BS04474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11714534..11715426 16..908 100   Plus

BS04474.5prime Sequence

924 bp (811 high quality bases) assembled on 2005-12-01

> BS04474.5prime
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCCATCCGCCTTTGGGTGG
TTTCACCAAGTCGGAGAGCTTCCT

BS04474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8246-PA 1278 Poxn-RA 1..867 17..883 4335 100 Plus
CG8246-PA 1278 Poxn-RA 877..904 893..920 140 100 Plus
CG1070-PB 2475 Alh-RB 1779..1805 457..483 135 100 Plus
CG1070-PC 2931 Alh-RC 1779..1805 457..483 135 100 Plus
CG1070-PD 3972 Alh-RD 3276..3302 457..483 135 100 Plus
CG1070-PA 4131 Alh-RA 3435..3461 457..483 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 843..1747 16..920 4480 99.8 Plus
Poxn-RA 2320 CG8246-RA 705..1609 16..920 4480 99.8 Plus
gsb-RA 1649 CG3388-RA 344..454 134..244 210 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827404..15828075 920..249 3265 99.7 Minus
2R 25286936 2R 15830314..15830457 171..28 720 100 Minus
2R 25286936 2R 15830166..15830246 250..170 405 100 Minus
2R 25286936 2R 25063338..25063448 134..244 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-10 01:51:53 has no hits.

BS04474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:25 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-PA 1..906 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:14 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8246-PA 1..906 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:36 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 698..1611 5..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:44 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 698..1611 5..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:44 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15827400..15828073 251..924 99 <- Minus
2R 15830166..15830245 171..250 100 <- Minus
2R 15830315..15830455 30..170 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:36 Download gff for BS04474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11714905..11715578 251..924 99 <- Minus
arm_2R 11717671..11717750 171..250 100 <- Minus
arm_2R 11717820..11717960 30..170 100 <- Minus

BS04474.complete Sequence

1310 bp (1310 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634954

> BS04474.complete
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCACATCCGCCTTGGGTGG
TTTCACCAAGTCGGAGAGCTCCATCGATCTTTCGACTCCCGGAGCGGCTG
GCGATGCGCTTAGCGACTGCGACTCCGGTAAATCCTCCCCGGCGGCACTC
TCACTAACCGCTTCTGGAGGTGGAAATGGCGCCGGATCAGCTCCAGAGGC
TTCACCAGGATCGACACTCAGCCACAGCCGCAAGCGGAATCCGTACTCCA
TCGAAGAACTGCTCAAGAAGCCGGAGAAACGACTCCGACTGGATAGCAAC
CGTCTGGAGTGCCTGGAATCCAGTTCCTGCGAGAGCAGCCAGGATAGTCC
AGTTGCTCCACCCTTGGAAACGCCAGAGGATGAGGATCCCGCCGAGGCGG
AGGAGGAGCAAGAGGAGGAAGACAGCGTTGAGGTAGTCAACTAAAAGCTT
TCTAGACCAT

BS04474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 1278 CG8246-PB 1..1278 17..1294 6390 100 Plus
Poxn-RA 1278 CG8246-PA 1..1278 17..1294 6390 100 Plus
gsb-RA 1284 CG3388-PA 160..270 134..244 210 79.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 843..2122 16..1295 6400 100 Plus
Poxn-RA 2320 CG8246-RA 705..1984 16..1295 6400 100 Plus
gsb-RA 1649 CG3388-RA 344..454 134..244 210 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827029..15828075 1295..249 5235 100 Minus
2R 25286936 2R 15830314..15830457 171..28 720 100 Minus
2R 25286936 2R 15830166..15830246 250..170 405 100 Minus
2R 25286936 2R 25063338..25063448 134..244 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 14:15:32 has no hits.

BS04474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:51 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1..1278 17..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:56 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 556..1842 5..1295 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:05 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 706..1981 17..1292 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:51 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 556..1842 5..1295 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:01 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 706..1981 17..1292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:01 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15827032..15828073 251..1292 100 <- Minus
2R 15830166..15830245 171..250 100 <- Minus
2R 15830315..15830457 28..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:05 Download gff for BS04474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11717820..11717962 28..170 100   Minus
arm_2R 11714537..11715578 251..1292 100 <- Minus
arm_2R 11717671..11717750 171..250 100 <- Minus

BS04474.pep Sequence

Translation from 16 to 1293

> BS04474.pep
MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVS
HGCVSKILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMF
AWEIREQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAA
AAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIARYAKPPALM
MNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPS
LLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSE
SSIDLSTPGAAGDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGST
LSHSRKRNPYSIEELLKKPEKRLRLDSNRLECLESSSCESSQDSPVAPPL
ETPEDEDPAEAEEEQEEEDSVEVVN*

BS04474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-PB 425 CG8246-PB 1..425 1..425 2208 100 Plus
Poxn-PA 425 CG8246-PA 1..425 1..425 2208 100 Plus
sv-PG 628 CG11049-PG 175..344 5..175 449 55.6 Plus
sv-PC 647 CG11049-PC 175..344 5..175 449 55.6 Plus
sv-PI 491 CG11049-PI 17..188 3..175 447 54.9 Plus