Clone BS04475 Report

Search the DGRC for BS04475

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)mdelta-HLH-RA
Protein status:BS04475.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04475.3prime Sequence

552 bp (551 high quality bases) assembled on 2005-12-01

> BS04475.3prime
ATGGTCTAGAAAGCTTTCACCAGGGGCGCCAGACTTCTTCGCCATGATGA
ATATCCTCTTCTCGCGGAGACTTTGAACGTTTTTGGTCGGCTAGATTAAC
TGGTTCTTCGGCCATATCGATGATTTCTTCTTCCTGTTTCATGTCCTTGA
GCTGGTGACCCAATTGCTTCATCAGGTGGGTGCCGAATTTGAGATCCAAG
CCGGGAACCGTAGAGAATATGTGCGAGACCTCGTAGGCAGCCTGGGTGTA
TCCGGCCCGAAATTTGTCCAGGTTAACTTGGTCGGGTGGTGGGGATTGAG
GATTGGCCACTCGCTGCTGCTGTTGCGCTTTCAGATAGTTGACGGTGAGC
TCTAAGATGTCAGCTTTCTCCAGCTTGCTGACCTGTTCGCCCTGCGCATC
CATGGTGTCCACGATGAGATCCTTGAGTTCGTCCAGATACAGGTTCATCC
GGGCGCGTCTTTTGCGCTCCAGGAGGGGTTTGGTCACCTTGCGGTAATGC
TGAGTCTTGGTCATAAATCTCTGACCCTGAACGGCCATGTCGACTGATAA
CT

BS04475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8328-PA 522 HLHmdelta-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..634 538..16 2615 100 Minus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 514..342 235 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998254 538..16 2615 100 Minus
3R 32079331 3R 26022032..26022204 514..342 235 75.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:46 has no hits.

BS04475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:26 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:15 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:04 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..642 9..546 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:47 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..642 9..546 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:47 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25997728..25998262 9..546 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:04 Download gff for BS04475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823450..21823984 9..546 98   Minus

BS04475.5prime Sequence

552 bp (551 high quality bases) assembled on 2005-12-01

> BS04475.5prime
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGTGAAAGCTTTCTAGA
CC

BS04475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8328-PA 522 HLHmdelta-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..634 17..539 2615 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 41..213 235 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998254 17..539 2615 100 Plus
3R 32079331 3R 26022032..26022204 41..213 235 75.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:36:17 has no hits.

BS04475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:27 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:16 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:07 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..642 9..546 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:22 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..642 9..546 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:22 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25997728..25998262 9..546 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:07 Download gff for BS04475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823450..21823984 9..546 98   Plus

BS04475.complete Sequence

554 bp (554 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634955

> BS04475.complete
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGTGAAAGCTTTCTAGA
CCAT

BS04475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 522 CG8328-PA 1..522 17..538 2610 100 Plus
E(spl)m3-HLH-RA 675 CG8346-PA 13..185 41..213 235 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..634 17..539 2615 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 41..213 235 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998254 17..539 2615 100 Plus
3R 32079331 3R 26022032..26022204 41..213 235 75.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:34:29 has no hits.

BS04475.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:58 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:44 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 108..642 9..546 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:13 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 112..632 17..537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:58 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 108..642 9..546 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:05 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 112..632 17..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:05 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25997732..25998252 17..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:13 Download gff for BS04475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823454..21823974 17..537 100   Plus

BS04475.pep Sequence

Translation from 16 to 537

> BS04475.pep
MAVQGQRFMTKTQHYRKVTKPLLERKRRARMNLYLDELKDLIVDTMDAQG
EQVSKLEKADILELTVNYLKAQQQQRVANPQSPPPDQVNLDKFRAGYTQA
AYEVSHIFSTVPGLDLKFGTHLMKQLGHQLKDMKQEEEIIDMAEEPVNLA
DQKRSKSPREEDIHHGEEVWRPW*

BS04475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-PA 173 CG8328-PA 1..173 1..173 900 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 9..205 9..173 324 39.6 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 7..195 9..173 308 40 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 7..147 9..157 280 43.6 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 5..140 9..136 252 42.3 Plus