Clone Sequence Records
BS04475.3prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-01
> BS04475.3prime
ATGGTCTAGAAAGCTTTCACCAGGGGCGCCAGACTTCTTCGCCATGATGA
ATATCCTCTTCTCGCGGAGACTTTGAACGTTTTTGGTCGGCTAGATTAAC
TGGTTCTTCGGCCATATCGATGATTTCTTCTTCCTGTTTCATGTCCTTGA
GCTGGTGACCCAATTGCTTCATCAGGTGGGTGCCGAATTTGAGATCCAAG
CCGGGAACCGTAGAGAATATGTGCGAGACCTCGTAGGCAGCCTGGGTGTA
TCCGGCCCGAAATTTGTCCAGGTTAACTTGGTCGGGTGGTGGGGATTGAG
GATTGGCCACTCGCTGCTGCTGTTGCGCTTTCAGATAGTTGACGGTGAGC
TCTAAGATGTCAGCTTTCTCCAGCTTGCTGACCTGTTCGCCCTGCGCATC
CATGGTGTCCACGATGAGATCCTTGAGTTCGTCCAGATACAGGTTCATCC
GGGCGCGTCTTTTGCGCTCCAGGAGGGGTTTGGTCACCTTGCGGTAATGC
TGAGTCTTGGTCATAAATCTCTGACCCTGAACGGCCATGTCGACTGATAA
CT
BS04475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8328-PA | 522 | HLHmdelta-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..634 | 538..16 | 2615 | 100 | Minus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 210..382 | 514..342 | 235 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25997732..25998254 | 538..16 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 26022032..26022204 | 514..342 | 235 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:46 has no hits.
BS04475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:26 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8328-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:15 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8328-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:04 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 108..642 | 9..546 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:47 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 108..642 | 9..546 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:47 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25997728..25998262 | 9..546 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:04 Download gff for
BS04475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21823450..21823984 | 9..546 | 98 | | Minus |
BS04475.5prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-01
> BS04475.5prime
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGTGAAAGCTTTCTAGA
CC
BS04475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8328-PA | 522 | HLHmdelta-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..634 | 17..539 | 2615 | 100 | Plus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 210..382 | 41..213 | 235 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25997732..25998254 | 17..539 | 2615 | 100 | Plus |
3R | 32079331 | 3R | 26022032..26022204 | 41..213 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:36:17 has no hits.
BS04475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:27 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8328-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:16 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8328-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:07 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 108..642 | 9..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:22 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 108..642 | 9..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:22 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25997728..25998262 | 9..546 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:07 Download gff for
BS04475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21823450..21823984 | 9..546 | 98 | | Plus |
BS04475.complete Sequence
554 bp (554 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634955
> BS04475.complete
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGTGAAAGCTTTCTAGA
CCAT
BS04475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mdelta-HLH-RA | 522 | CG8328-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
E(spl)m3-HLH-RA | 675 | CG8346-PA | 13..185 | 41..213 | 235 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..634 | 17..539 | 2615 | 100 | Plus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 210..382 | 41..213 | 235 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25997732..25998254 | 17..539 | 2615 | 100 | Plus |
3R | 32079331 | 3R | 26022032..26022204 | 41..213 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:29 has no hits.
BS04475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:58 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmdelta-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:44 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmdelta-RA | 108..642 | 9..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:13 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 112..632 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:58 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmdelta-RA | 108..642 | 9..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:05 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mdelta-HLH-RA | 112..632 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:05 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25997732..25998252 | 17..537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:13 Download gff for
BS04475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21823454..21823974 | 17..537 | 100 | | Plus |
BS04475.pep Sequence
Translation from 16 to 537
> BS04475.pep
MAVQGQRFMTKTQHYRKVTKPLLERKRRARMNLYLDELKDLIVDTMDAQG
EQVSKLEKADILELTVNYLKAQQQQRVANPQSPPPDQVNLDKFRAGYTQA
AYEVSHIFSTVPGLDLKFGTHLMKQLGHQLKDMKQEEEIIDMAEEPVNLA
DQKRSKSPREEDIHHGEEVWRPW*
BS04475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 1..173 | 1..173 | 900 | 100 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 9..205 | 9..173 | 324 | 39.6 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 7..195 | 9..173 | 308 | 40 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 7..147 | 9..157 | 280 | 43.6 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 5..140 | 9..136 | 252 | 42.3 | Plus |