Clone Sequence Records
BS04478.3prime Sequence
915 bp (785 high quality bases) assembled on 2005-12-01
> BS04478.3prime
ATGGTCTAGAAAGCTTTCAGTCGTGTTGCGTGTAAATAGCAACATCCACA
TCCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCC
ATTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAG
TCTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACC
TGCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGG
AGTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACT
TCTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCC
GCCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCG
CTGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCA
GGGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGC
TGGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGC
GGGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCA
AGGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCT
GGTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATC
CTCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCC
TGACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTC
AAAAGCCGCAATCGTTTCATATTCAACGATCTCAGAGGCGGTGGACTGGG
CGAACCCACCGAAACATCAGAGTTAGCGGGACTGGGAGTTCTTTGCGGCA
TGTCGACTGATAACT
BS04478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 1..703 | 901..199 | 3515 | 100 | Minus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 450..363 | 315 | 94.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..1051 | 901..17 | 4425 | 100 | Minus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 901..199 | 3515 | 100 | Minus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 901..199 | 3515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 199..901 | 3515 | 100 | Plus |
3R | 32079331 | 3R | 21426922..21427104 | 17..199 | 915 | 100 | Plus |
3R | 32079331 | 3R | 21445093..21445425 | 207..536 | 550 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:23:29 has no hits.
BS04478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:33 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 1..703 | 199..901 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:23 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 1..703 | 199..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:03 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..1051 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:08 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..1051 | 17..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:08 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426922..21427103 | 17..198 | 100 | <- | Plus |
3R | 21433265..21433969 | 199..907 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:03 Download gff for
BS04478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252644..17252825 | 17..198 | 100 | <- | Plus |
arm_3R | 17258987..17259691 | 199..907 | 99 | <- | Plus |
BS04478.5prime Sequence
806 bp (804 high quality bases) assembled on 2005-12-01
> BS04478.5prime
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATG
BS04478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 1..703 | 17..719 | 3515 | 100 | Plus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 468..555 | 315 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..956 | 17..806 | 3950 | 100 | Plus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 719..17 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 21445093..21445425 | 711..382 | 550 | 78.4 | Minus |
3R | 32079331 | 3R | 21427017..21427104 | 806..719 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:33:13 has no hits.
BS04478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:34 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:25 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:52:33 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..956 | 14..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:20 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..956 | 14..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:20 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21427017..21427103 | 720..806 | 100 | <- | Minus |
3R | 21433265..21433969 | 11..719 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:52:33 Download gff for
BS04478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252739..17252825 | 720..806 | 100 | <- | Minus |
arm_3R | 17258987..17259691 | 11..719 | 99 | <- | Minus |
BS04478.complete Sequence
917 bp (917 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634956
> BS04478.complete
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAAACAAGCACAA
GTTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACTG
AAAGCTTTCTAGACCAT
BS04478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 885 | CG6570-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
lbl-RC | 1233 | CG6570-PC | 1..703 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1119 | CG6570-PA | 1..703 | 17..719 | 3515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..1051 | 17..901 | 4425 | 100 | Plus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 719..17 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 21426922..21427104 | 901..719 | 915 | 100 | Minus |
3R | 32079331 | 3R | 21445093..21445425 | 711..382 | 550 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:52 has no hits.
BS04478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:54 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:59 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 141..1028 | 14..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:16 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 167..1050 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:54 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RA | 154..859 | 14..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:50 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 167..1050 | 17..900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:50 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426923..21427103 | 720..900 | 100 | <- | Minus |
3R | 21433265..21433967 | 17..719 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:16 Download gff for
BS04478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252645..17252825 | 720..900 | 100 | <- | Minus |
arm_3R | 17258987..17259689 | 17..719 | 100 | | Minus |
BS04478.pep Sequence
Translation from 16 to 900
> BS04478.pep
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHD*
BS04478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-PB | 294 | CG6570-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
lbl-PA | 372 | CG6570-PA | 1..269 | 1..276 | 1216 | 88.4 | Plus |
lbl-PC | 410 | CG6570-PC | 1..269 | 1..276 | 1216 | 88.4 | Plus |
lbe-PA | 479 | CG6545-PA | 98..371 | 7..276 | 497 | 45.9 | Plus |