Clone BS04478 Report

Search the DGRC for BS04478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:78
Vector:pDNR-Dual
Associated Gene/Transcriptlbl-RB
Protein status:BS04478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04478.3prime Sequence

915 bp (785 high quality bases) assembled on 2005-12-01

> BS04478.3prime
ATGGTCTAGAAAGCTTTCAGTCGTGTTGCGTGTAAATAGCAACATCCACA
TCCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCC
ATTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAG
TCTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACC
TGCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGG
AGTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACT
TCTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCC
GCCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCG
CTGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCA
GGGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGC
TGGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGC
GGGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCA
AGGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCT
GGTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATC
CTCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCC
TGACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTC
AAAAGCCGCAATCGTTTCATATTCAACGATCTCAGAGGCGGTGGACTGGG
CGAACCCACCGAAACATCAGAGTTAGCGGGACTGGGAGTTCTTTGCGGCA
TGTCGACTGATAACT

BS04478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 1..703 901..199 3515 100 Minus
CG6545-PA 1440 lbe-RA 755..842 450..363 315 94.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..1051 901..17 4425 100 Minus
lbl-RC 1803 CG6570-RC 167..869 901..199 3515 100 Minus
lbl-RA 1855 CG6570-RA 167..869 901..199 3515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 199..901 3515 100 Plus
3R 32079331 3R 21426922..21427104 17..199 915 100 Plus
3R 32079331 3R 21445093..21445425 207..536 550 78.4 Plus
Blast to na_te.dros performed on 2015-02-10 19:23:29 has no hits.

BS04478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:33 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 1..703 199..901 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:23 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 1..703 199..901 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:03 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..1051 17..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:08 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..1051 17..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:08 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21426922..21427103 17..198 100 <- Plus
3R 21433265..21433969 199..907 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:03 Download gff for BS04478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252644..17252825 17..198 100 <- Plus
arm_3R 17258987..17259691 199..907 99 <- Plus

BS04478.5prime Sequence

806 bp (804 high quality bases) assembled on 2005-12-01

> BS04478.5prime
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATG

BS04478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 1..703 17..719 3515 100 Plus
CG6545-PA 1440 lbe-RA 755..842 468..555 315 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..956 17..806 3950 100 Plus
lbl-RC 1803 CG6570-RC 167..869 17..719 3515 100 Plus
lbl-RA 1855 CG6570-RA 167..869 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 719..17 3515 100 Minus
3R 32079331 3R 21445093..21445425 711..382 550 78.4 Minus
3R 32079331 3R 21427017..21427104 806..719 440 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:33:13 has no hits.

BS04478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:34 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:25 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:52:33 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..956 14..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:20 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..956 14..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:20 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21427017..21427103 720..806 100 <- Minus
3R 21433265..21433969 11..719 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:52:33 Download gff for BS04478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252739..17252825 720..806 100 <- Minus
arm_3R 17258987..17259691 11..719 99 <- Minus

BS04478.complete Sequence

917 bp (917 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634956

> BS04478.complete
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAAACAAGCACAA
GTTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACTG
AAAGCTTTCTAGACCAT

BS04478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 885 CG6570-PB 1..885 17..901 4425 100 Plus
lbl-RC 1233 CG6570-PC 1..703 17..719 3515 100 Plus
lbl-RA 1119 CG6570-PA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..1051 17..901 4425 100 Plus
lbl-RC 1803 CG6570-RC 167..869 17..719 3515 100 Plus
lbl-RA 1855 CG6570-RA 167..869 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 719..17 3515 100 Minus
3R 32079331 3R 21426922..21427104 901..719 915 100 Minus
3R 32079331 3R 21445093..21445425 711..382 550 78.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:52 has no hits.

BS04478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:54 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:59 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 141..1028 14..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:16 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 167..1050 17..900 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:54 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 154..859 14..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:50 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 167..1050 17..900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:50 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21426923..21427103 720..900 100 <- Minus
3R 21433265..21433967 17..719 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:16 Download gff for BS04478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252645..17252825 720..900 100 <- Minus
arm_3R 17258987..17259689 17..719 100   Minus

BS04478.pep Sequence

Translation from 16 to 900

> BS04478.pep
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHD*

BS04478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-PB 294 CG6570-PB 1..294 1..294 1507 100 Plus
lbl-PA 372 CG6570-PA 1..269 1..276 1216 88.4 Plus
lbl-PC 410 CG6570-PC 1..269 1..276 1216 88.4 Plus
lbe-PA 479 CG6545-PA 98..371 7..276 497 45.9 Plus