Clone Sequence Records
BS04480.3prime Sequence
519 bp (518 high quality bases) assembled on 2005-12-01
> BS04480.3prime
ATGGTCTAGAAAGCTTCTAGCTCTTCCAGCGGTTGCCGCACTCGTCGCAT
ATCACAAAGGTGATAATGGGCTCGTCACCATCACGGATATGCAATTGGCT
GCAGTTGCGTTTGTCGCAGCGTTCGCATTTGAACTGATCCGTCTTGGTGC
CCTGAACCTTGGCCATCTGTGCCGCATTGATCGAGTCCTGAACGTACTTC
TGGCGCATCTGCTTCATATCATCGCTGGCCATCTCCTCGGGCGTCATCTT
GGATAACTCTTCGGGCGTTATTTGACCTAATAGGAACTTCTGGCGCAGCT
CTGGATTCTTCGGATCGCGCAAGTTGGCCAAACGCGAACGTATGCGATTT
TTGTACTTCACCTTGCAGCCGTTCAAGTCGCCGTAAATTGCGTCCTCCAG
TTTAGCGGCCATGTCATCCGGATCGCCACATCCTGGTGGCATGTTGCCCG
ATTTCAATGCGGTTGCCAACATCTCGCGGCACTTGATGCGTATTTCCATG
GACATGTCGACTGATAACT
BS04480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-PA | 489 | CG8117-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
CG3710-PA | 942 | TfIIS-RA | 703..754 | 247..196 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..559 | 506..16 | 2455 | 100 | Minus |
TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 252..23 | 275 | 75.5 | Minus |
TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 252..23 | 275 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644780 | 506..16 | 2455 | 100 | Minus |
2L | 23513712 | 2L | 15059619..15059735 | 136..252 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:22:51 has no hits.
BS04480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:38 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:29 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:46:19 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..559 | 16..517 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:01:30 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..559 | 16..517 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:01:30 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644281..15644780 | 16..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:46:19 Download gff for
BS04480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538314..15538813 | 16..517 | 99 | | Minus |
BS04480.5prime Sequence
519 bp (518 high quality bases) assembled on 2005-12-01
> BS04480.5prime
GAAGTTATCAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGA
TGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGAT
CCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAA
CGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACT
TGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAA
ATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGA
TGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGG
CACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAA
CGCTGCGACAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGA
GCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGA
GCTAGAAGCTTTCTAGACC
BS04480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-PA | 489 | CG8117-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG3710-PA | 942 | TfIIS-RA | 703..754 | 275..326 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..559 | 16..506 | 2455 | 100 | Plus |
TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 270..499 | 275 | 75.5 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 270..499 | 275 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644780 | 16..506 | 2455 | 100 | Plus |
2L | 23513712 | 2L | 15059619..15059735 | 386..270 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:03:17 has no hits.
BS04480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:39 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:31 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:31 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..559 | 5..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:57 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..559 | 5..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:57 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644281..15644780 | 5..506 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:31 Download gff for
BS04480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538314..15538813 | 5..506 | 99 | | Plus |
BS04480.complete Sequence
521 bp (521 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634957
> BS04480.complete
GAAGTTATCAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGA
TGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGAT
CCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAA
CGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACT
TGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAA
ATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGA
TGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGG
CACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAA
CGCTGCGACAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGA
GCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGA
GCTAGAAGCTTTCTAGACCAT
BS04480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 489 | CG8117-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
TfIIS-RB | 942 | CG3710-PB | 698..814 | 270..386 | 270 | 82.1 | Plus |
TfIIS-RA | 942 | CG3710-PA | 698..814 | 270..386 | 270 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..559 | 16..506 | 2455 | 100 | Plus |
TfIIS-RB | 1773 | CG3710-RB | 957..1073 | 270..386 | 270 | 82.1 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 957..1073 | 270..386 | 270 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644780 | 16..506 | 2455 | 100 | Plus |
2L | 23513712 | 2L | 15059619..15059735 | 386..270 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:57 has no hits.
BS04480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:55 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:01 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..559 | 5..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:00 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 70..558 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:55 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:13 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 70..558 | 17..505 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:13 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644291..15644779 | 17..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:00 Download gff for
BS04480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538324..15538812 | 17..505 | 100 | | Plus |
BS04480.pep Sequence
Translation from 16 to 504
> BS04480.pep
MSMEIRIKCREMLATALKSGNMPPGCGDPDDMAAKLEDAIYGDLNGCKVK
YKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQM
RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNCSQLHIRDGDEPIITF
VICDECGNRWKS*
BS04480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-PA | 162 | CG8117-PA | 1..162 | 1..162 | 864 | 100 | Plus |
TfIIS-PB | 313 | CG3710-PB | 149..311 | 1..161 | 576 | 63.8 | Plus |
TfIIS-PA | 313 | CG3710-PA | 149..311 | 1..161 | 576 | 63.8 | Plus |