Clone BS04480 Report

Search the DGRC for BS04480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG8117-RA
Protein status:BS04480.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04480.3prime Sequence

519 bp (518 high quality bases) assembled on 2005-12-01

> BS04480.3prime
ATGGTCTAGAAAGCTTCTAGCTCTTCCAGCGGTTGCCGCACTCGTCGCAT
ATCACAAAGGTGATAATGGGCTCGTCACCATCACGGATATGCAATTGGCT
GCAGTTGCGTTTGTCGCAGCGTTCGCATTTGAACTGATCCGTCTTGGTGC
CCTGAACCTTGGCCATCTGTGCCGCATTGATCGAGTCCTGAACGTACTTC
TGGCGCATCTGCTTCATATCATCGCTGGCCATCTCCTCGGGCGTCATCTT
GGATAACTCTTCGGGCGTTATTTGACCTAATAGGAACTTCTGGCGCAGCT
CTGGATTCTTCGGATCGCGCAAGTTGGCCAAACGCGAACGTATGCGATTT
TTGTACTTCACCTTGCAGCCGTTCAAGTCGCCGTAAATTGCGTCCTCCAG
TTTAGCGGCCATGTCATCCGGATCGCCACATCCTGGTGGCATGTTGCCCG
ATTTCAATGCGGTTGCCAACATCTCGCGGCACTTGATGCGTATTTCCATG
GACATGTCGACTGATAACT

BS04480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-PA 489 CG8117-RA 1..489 505..17 2445 100 Minus
CG3710-PA 942 TfIIS-RA 703..754 247..196 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..559 506..16 2455 100 Minus
TfIIS-RB 1773 CG3710-RB 957..1192 252..23 275 75.5 Minus
TfIIS-RA 1401 CG3710-RA 957..1192 252..23 275 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644780 506..16 2455 100 Minus
2L 23513712 2L 15059619..15059735 136..252 270 82.1 Plus
Blast to na_te.dros performed on 2015-02-11 18:22:51 has no hits.

BS04480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:38 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:29 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:46:19 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..559 16..517 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:01:30 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..559 16..517 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:01:30 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15644281..15644780 16..517 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:46:19 Download gff for BS04480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538314..15538813 16..517 99   Minus

BS04480.5prime Sequence

519 bp (518 high quality bases) assembled on 2005-12-01

> BS04480.5prime
GAAGTTATCAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGA
TGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGAT
CCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAA
CGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACT
TGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAA
ATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGA
TGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGG
CACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAA
CGCTGCGACAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGA
GCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGA
GCTAGAAGCTTTCTAGACC

BS04480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-PA 489 CG8117-RA 1..489 17..505 2445 100 Plus
CG3710-PA 942 TfIIS-RA 703..754 275..326 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..559 16..506 2455 100 Plus
TfIIS-RB 1773 CG3710-RB 957..1192 270..499 275 75.5 Plus
TfIIS-RA 1401 CG3710-RA 957..1192 270..499 275 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644780 16..506 2455 100 Plus
2L 23513712 2L 15059619..15059735 386..270 270 82.1 Minus
Blast to na_te.dros performed on 2015-02-11 11:03:17 has no hits.

BS04480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:39 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:31 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:31 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..559 5..506 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:57 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..559 5..506 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:57 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15644281..15644780 5..506 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:31 Download gff for BS04480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538314..15538813 5..506 99   Plus

BS04480.complete Sequence

521 bp (521 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634957

> BS04480.complete
GAAGTTATCAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGA
TGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGAT
CCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAA
CGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACT
TGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAA
ATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGA
TGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGG
CACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAA
CGCTGCGACAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGA
GCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGA
GCTAGAAGCTTTCTAGACCAT

BS04480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 489 CG8117-PA 1..489 17..505 2445 100 Plus
TfIIS-RB 942 CG3710-PB 698..814 270..386 270 82.1 Plus
TfIIS-RA 942 CG3710-PA 698..814 270..386 270 82.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..559 16..506 2455 100 Plus
TfIIS-RB 1773 CG3710-RB 957..1073 270..386 270 82.1 Plus
TfIIS-RA 1401 CG3710-RA 957..1073 270..386 270 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644780 16..506 2455 100 Plus
2L 23513712 2L 15059619..15059735 386..270 270 82.1 Minus
Blast to na_te.dros performed on 2014-11-27 23:35:57 has no hits.

BS04480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:55 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:01 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..559 5..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:00 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 70..558 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:55 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:13 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 70..558 17..505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:13 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
X 15644291..15644779 17..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:00 Download gff for BS04480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538324..15538812 17..505 100   Plus

BS04480.pep Sequence

Translation from 16 to 504

> BS04480.pep
MSMEIRIKCREMLATALKSGNMPPGCGDPDDMAAKLEDAIYGDLNGCKVK
YKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQM
RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNCSQLHIRDGDEPIITF
VICDECGNRWKS*

BS04480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-PA 162 CG8117-PA 1..162 1..162 864 100 Plus
TfIIS-PB 313 CG3710-PB 149..311 1..161 576 63.8 Plus
TfIIS-PA 313 CG3710-PA 149..311 1..161 576 63.8 Plus