Clone Sequence Records
BS04481.3prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-01
> BS04481.3prime
ATGGTCTAGAAAGCTTCTACCAGGGACGCCAGACGTTCTCCTCGTCCTCG
CTGTCGTCCTCCATCTTGGTCACATCGATGGTGGTCAACAGGGAATGGCT
GGTCGAACTGGTATTGGAGTTGGGACTGCCGGCGTAGCTGGAGATTGGCG
AAATGGGCACGGAGTAGGCATCCCGATTGGCGATGTGCACGGAGAGTGGA
GCGGTCACCGGCAAGACTTCCTTTTCTGCTGGCTGGATCTGATTGAGGCG
CTGTCCCAGGTGGGTCATTAGCTGAGTGCCTAGGCTGACATTCATGCCGG
GCAGCTGGGAGAGTGAACGGGAGACCTCATTGACGGCATGGATGTAGCCG
GAACGGAAGCCCTCCGCCGGAGTCAAGCTCTCATCGCCGGAAGCCCGCTT
GTGCTGACGCTGCTGCTTCATCTTTTGCAAATGGGTGACGGTAAGTTCCA
GGATATCGGCTTTCTCCAAACGGGTGACGTGCTCGCCCTCGGACTCCAAG
GTGGCAACCATAAGATCCTTTAGCTCGTCCAGGCACTTGTTGATTCTGGC
ACGACGCTTCCTCTCCAGCATGGGCTTCATCACCTTGCGGTACTGATAGG
TCTTGGACATCTCGGACATTTGTAGCGACGACATGTCGACTGATAACT
BS04481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8333-PA | 618 | HLHmgamma-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
CG8361-PA | 561 | HLHm7-RA | 15..116 | 614..513 | 360 | 94.1 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 613..516 | 340 | 93.8 | Minus |
CG8346-PA | 675 | HLHm3-RA | 10..50 | 613..573 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..711 | 634..16 | 3095 | 100 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 613..438 | 460 | 84.7 | Minus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 614..508 | 430 | 93.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000561 | 634..16 | 3095 | 100 | Minus |
3R | 32079331 | 3R | 26005703..26005878 | 438..613 | 460 | 84.1 | Plus |
3R | 32079331 | 3R | 26037177..26037283 | 614..508 | 430 | 93.5 | Minus |
3R | 32079331 | 3R | 26022029..26022195 | 613..447 | 430 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:24:49 has no hits.
BS04481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:40 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:32 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:11 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..718 | 10..642 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:02 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..718 | 10..642 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:02 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999935..26000568 | 10..642 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:11 Download gff for
BS04481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825657..21826290 | 10..642 | 98 | | Minus |
BS04481.5prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-01
> BS04481.5prime
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGTAGAAGCTTTCTAGACC
BS04481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8333-PA | 618 | HLHmgamma-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
CG8361-PA | 561 | HLHm7-RA | 15..116 | 37..138 | 360 | 94.1 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 38..135 | 340 | 93.8 | Plus |
CG8346-PA | 675 | HLHm3-RA | 10..50 | 38..78 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..711 | 17..635 | 3095 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 38..213 | 460 | 84.7 | Plus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 37..143 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000561 | 17..635 | 3095 | 100 | Plus |
3R | 32079331 | 3R | 26005703..26005878 | 213..38 | 460 | 84.1 | Minus |
3R | 32079331 | 3R | 26022029..26022195 | 38..204 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037177..26037283 | 37..143 | 430 | 93.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:53:40 has no hits.
BS04481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:41 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:34 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:34:59 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..718 | 9..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:41 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..718 | 9..641 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:41 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999935..26000568 | 9..641 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:34:59 Download gff for
BS04481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825657..21826290 | 9..641 | 98 | | Plus |
BS04481.complete Sequence
650 bp (650 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634958
> BS04481.complete
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGTAGAAGCTTTCTAGACCAT
BS04481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 16..191 | 38..213 | 460 | 84.1 | Plus |
E(spl)m7-HLH-RA | 561 | CG8361-PA | 15..121 | 37..143 | 430 | 93.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..711 | 17..635 | 3095 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 38..213 | 460 | 84.1 | Plus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 37..143 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000561 | 17..635 | 3095 | 100 | Plus |
3R | 32079331 | 3R | 26005703..26005878 | 213..38 | 460 | 84.1 | Minus |
3R | 32079331 | 3R | 26022029..26022195 | 38..204 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037177..26037283 | 37..143 | 430 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:55:58 has no hits.
BS04481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:56 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:02 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 78..711 | 9..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:08 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 93..710 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:56 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 78..711 | 9..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:33 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 93..710 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:33 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999943..26000560 | 17..634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:08 Download gff for
BS04481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825665..21826282 | 17..634 | 100 | | Plus |
BS04481.pep Sequence
Translation from 16 to 633
> BS04481.pep
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPW*
BS04481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 1..205 | 1..205 | 1041 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 6..195 | 8..205 | 475 | 50.5 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 8..205 | 428 | 48.7 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 4..224 | 8..205 | 353 | 42 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..173 | 9..205 | 324 | 39.6 | Plus |