Clone BS04481 Report

Search the DGRC for BS04481

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)mgamma-HLH-RA
Protein status:BS04481.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04481.3prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-01

> BS04481.3prime
ATGGTCTAGAAAGCTTCTACCAGGGACGCCAGACGTTCTCCTCGTCCTCG
CTGTCGTCCTCCATCTTGGTCACATCGATGGTGGTCAACAGGGAATGGCT
GGTCGAACTGGTATTGGAGTTGGGACTGCCGGCGTAGCTGGAGATTGGCG
AAATGGGCACGGAGTAGGCATCCCGATTGGCGATGTGCACGGAGAGTGGA
GCGGTCACCGGCAAGACTTCCTTTTCTGCTGGCTGGATCTGATTGAGGCG
CTGTCCCAGGTGGGTCATTAGCTGAGTGCCTAGGCTGACATTCATGCCGG
GCAGCTGGGAGAGTGAACGGGAGACCTCATTGACGGCATGGATGTAGCCG
GAACGGAAGCCCTCCGCCGGAGTCAAGCTCTCATCGCCGGAAGCCCGCTT
GTGCTGACGCTGCTGCTTCATCTTTTGCAAATGGGTGACGGTAAGTTCCA
GGATATCGGCTTTCTCCAAACGGGTGACGTGCTCGCCCTCGGACTCCAAG
GTGGCAACCATAAGATCCTTTAGCTCGTCCAGGCACTTGTTGATTCTGGC
ACGACGCTTCCTCTCCAGCATGGGCTTCATCACCTTGCGGTACTGATAGG
TCTTGGACATCTCGGACATTTGTAGCGACGACATGTCGACTGATAACT

BS04481.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8333-PA 618 HLHmgamma-RA 1..618 634..17 3090 100 Minus
CG8361-PA 561 HLHm7-RA 15..116 614..513 360 94.1 Minus
CG14548-PA 588 HLHmbeta-RA 16..113 613..516 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 10..50 613..573 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..711 634..16 3095 100 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 613..438 460 84.7 Minus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 614..508 430 93.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000561 634..16 3095 100 Minus
3R 32079331 3R 26005703..26005878 438..613 460 84.1 Plus
3R 32079331 3R 26037177..26037283 614..508 430 93.5 Minus
3R 32079331 3R 26022029..26022195 613..447 430 83.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:24:49 has no hits.

BS04481.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:40 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:32 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:11 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..718 10..642 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:02 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..718 10..642 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:02 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25999935..26000568 10..642 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:11 Download gff for BS04481.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825657..21826290 10..642 98   Minus

BS04481.5prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-01

> BS04481.5prime
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGTAGAAGCTTTCTAGACC

BS04481.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8333-PA 618 HLHmgamma-RA 1..618 17..634 3090 100 Plus
CG8361-PA 561 HLHm7-RA 15..116 37..138 360 94.1 Plus
CG14548-PA 588 HLHmbeta-RA 16..113 38..135 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 10..50 38..78 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..711 17..635 3095 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 38..213 460 84.7 Plus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 37..143 430 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000561 17..635 3095 100 Plus
3R 32079331 3R 26005703..26005878 213..38 460 84.1 Minus
3R 32079331 3R 26022029..26022195 38..204 430 83.8 Plus
3R 32079331 3R 26037177..26037283 37..143 430 93.5 Plus
Blast to na_te.dros performed on 2015-02-11 09:53:40 has no hits.

BS04481.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:41 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:34 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:34:59 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..718 9..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:41 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..718 9..641 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:41 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25999935..26000568 9..641 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:34:59 Download gff for BS04481.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825657..21826290 9..641 98   Plus

BS04481.complete Sequence

650 bp (650 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634958

> BS04481.complete
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGTAGAAGCTTTCTAGACCAT

BS04481.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 618 CG8333-PA 1..618 17..634 3090 100 Plus
E(spl)mbeta-HLH-RA 588 CG14548-PA 16..191 38..213 460 84.1 Plus
E(spl)m7-HLH-RA 561 CG8361-PA 15..121 37..143 430 93.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..711 17..635 3095 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 38..213 460 84.1 Plus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 37..143 430 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000561 17..635 3095 100 Plus
3R 32079331 3R 26005703..26005878 213..38 460 84.1 Minus
3R 32079331 3R 26022029..26022195 38..204 430 83.8 Plus
3R 32079331 3R 26037177..26037283 37..143 430 93.5 Plus
Blast to na_te.dros performed on 2014-11-27 12:55:58 has no hits.

BS04481.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:56 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:02 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 78..711 9..641 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:08 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 93..710 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:56 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 78..711 9..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:33 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 93..710 17..634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:33 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25999943..26000560 17..634 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:08 Download gff for BS04481.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825665..21826282 17..634 100   Plus

BS04481.pep Sequence

Translation from 16 to 633

> BS04481.pep
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPW*

BS04481.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-PA 205 CG8333-PA 1..205 1..205 1041 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 6..195 8..205 475 50.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 6..186 8..205 428 48.7 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 8..205 353 42 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 9..205 324 39.6 Plus