Clone BS04484 Report

Search the DGRC for BS04484

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)m7-HLH-RA
Protein status:BS04484.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04484.3prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-01

> BS04484.3prime
ATGGTCTAGAAAGCTTTTACCAGGGACGCCACACCTGTCCGGGGCTGCTG
ATCTGGAGCAGAGACTCGTTGTCGCTGGCATATCCACTGGAAACGGGACT
GATGGAGGAGCAGGAGCTGGCACTGGAGTAGGTGCTGGAGCTAGAGCTGG
ATCCACAGACGATACTGAGTGGAGTGTTGACGGCTTGCGGTTGTTCCATG
GGCTGCTCCAGTTGGTTGAGACGCATGCCCAGATGGGTCATCAGTGTGGT
TCCAAAAGCCACATCCACTCGGGGAAGGGAGGCCAGGGCGCGGGACACTT
CGTTGGCTGCCCGGATGTATCCAGCACGGAAACTCTGTTCGGGATTGGCC
GGAACATGCTTCTTAGACTCTTTCAGCTTGCGGAGATGCTGCACGGTGAC
TTCCAGGATGTCGGCCTTCTCGAATTTGGCATCGCCAGTCTGAGCAACGC
ACTCGGCCATCAGATCCTTGAGCTCGTCCAGGCACTTGTTGATCCTGGCA
CGACGCTTCCGCTCCAGCAAGGGCTTCATCACCTTGCGGTACTGATAGGT
TTTCGACATCTCGTATTTGGTGGCCATGTCGACTGATAACT

BS04484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..561 577..17 2805 100 Minus
CG8333-PA 618 HLHmgamma-RA 21..122 563..462 360 94.1 Minus
CG14548-PA 588 HLHmbeta-RA 16..113 562..465 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 25..115 547..457 255 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..687 577..16 2810 100 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 563..457 430 93.5 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 562..449 405 90.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037724 577..16 2810 100 Minus
3R 32079331 3R 25999963..26000069 563..457 430 93.5 Minus
3R 32079331 3R 26005765..26005878 449..562 405 90.4 Plus
3R 32079331 3R 26022029..26022142 562..449 375 88.6 Minus
Blast to na_te.dros performed on 2015-02-03 13:07:28 has no hits.

BS04484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:47 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:40 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:07 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..687 16..585 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:01 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..687 16..585 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:01 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037724 16..585 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:07 Download gff for BS04484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863446 16..585 99   Minus

BS04484.5prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-01

> BS04484.5prime
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGTAAAAGCTTTCTAGACC

BS04484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..561 17..577 2805 100 Plus
CG8333-PA 618 HLHmgamma-RA 21..122 31..132 360 94.1 Plus
CG14548-PA 588 HLHmbeta-RA 16..113 32..129 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 25..115 47..137 255 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..687 17..578 2810 100 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 32..145 405 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037724 17..578 2810 100 Plus
3R 32079331 3R 25999963..26000069 31..137 430 93.5 Plus
3R 32079331 3R 26005765..26005878 145..32 405 90.4 Minus
3R 32079331 3R 26022029..26022142 32..145 375 88.6 Plus
Blast to na_te.dros performed on 2015-02-13 15:38:03 has no hits.

BS04484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:48 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:42 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:51 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..687 9..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:04:42 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..687 9..578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:04:42 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037724 9..578 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:51 Download gff for BS04484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863446 9..578 99   Plus

BS04484.complete Sequence

593 bp (593 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634960

> BS04484.complete
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGTAAAAGCTTTCTAGACCAT

BS04484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 561 CG8361-PA 1..561 17..577 2805 100 Plus
E(spl)mgamma-HLH-RA 618 CG8333-PA 21..127 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 588 CG14548-PA 16..129 32..145 405 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..687 17..578 2810 100 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 32..145 405 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037724 17..578 2810 100 Plus
3R 32079331 3R 25999963..26000069 31..137 430 93.5 Plus
3R 32079331 3R 26005765..26005878 145..32 405 90.4 Minus
3R 32079331 3R 26022029..26022142 32..145 375 88.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:55:07 has no hits.

BS04484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:58 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:06 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 120..687 9..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:52 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 126..684 17..575 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:58 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 120..687 9..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:52 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 126..684 17..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:52 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26037163..26037721 17..575 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:52 Download gff for BS04484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862885..21863443 17..575 100   Plus

BS04484.pep Sequence

Translation from 16 to 576

> BS04484.pep
MATKYEMSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGDA
KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALAS
LPRVDVAFGTTLMTHLGMRLNQLEQPMEQPQAVNTPLSIVCGSSSSSSTY
SSASSCSSISPVSSGYASDNESLLQISSPGQVWRPW*

BS04484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-PA 186 CG8361-PA 1..186 1..186 945 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 8..205 6..186 428 48.7 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 1..195 1..186 412 46.3 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 6..186 323 38.5 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 5..179 8..186 306 40.7 Plus