Clone Sequence Records
BS04484.3prime Sequence
591 bp (590 high quality bases) assembled on 2005-12-01
> BS04484.3prime
ATGGTCTAGAAAGCTTTTACCAGGGACGCCACACCTGTCCGGGGCTGCTG
ATCTGGAGCAGAGACTCGTTGTCGCTGGCATATCCACTGGAAACGGGACT
GATGGAGGAGCAGGAGCTGGCACTGGAGTAGGTGCTGGAGCTAGAGCTGG
ATCCACAGACGATACTGAGTGGAGTGTTGACGGCTTGCGGTTGTTCCATG
GGCTGCTCCAGTTGGTTGAGACGCATGCCCAGATGGGTCATCAGTGTGGT
TCCAAAAGCCACATCCACTCGGGGAAGGGAGGCCAGGGCGCGGGACACTT
CGTTGGCTGCCCGGATGTATCCAGCACGGAAACTCTGTTCGGGATTGGCC
GGAACATGCTTCTTAGACTCTTTCAGCTTGCGGAGATGCTGCACGGTGAC
TTCCAGGATGTCGGCCTTCTCGAATTTGGCATCGCCAGTCTGAGCAACGC
ACTCGGCCATCAGATCCTTGAGCTCGTCCAGGCACTTGTTGATCCTGGCA
CGACGCTTCCGCTCCAGCAAGGGCTTCATCACCTTGCGGTACTGATAGGT
TTTCGACATCTCGTATTTGGTGGCCATGTCGACTGATAACT
BS04484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8361-PA | 561 | HLHm7-RA | 1..561 | 577..17 | 2805 | 100 | Minus |
CG8333-PA | 618 | HLHmgamma-RA | 21..122 | 563..462 | 360 | 94.1 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 562..465 | 340 | 93.8 | Minus |
CG8346-PA | 675 | HLHm3-RA | 25..115 | 547..457 | 255 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..687 | 577..16 | 2810 | 100 | Minus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 563..457 | 430 | 93.5 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 562..449 | 405 | 90.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037724 | 577..16 | 2810 | 100 | Minus |
3R | 32079331 | 3R | 25999963..26000069 | 563..457 | 430 | 93.5 | Minus |
3R | 32079331 | 3R | 26005765..26005878 | 449..562 | 405 | 90.4 | Plus |
3R | 32079331 | 3R | 26022029..26022142 | 562..449 | 375 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:07:28 has no hits.
BS04484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:47 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:40 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8361-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:07 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..687 | 16..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:01 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..687 | 16..585 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:01 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037157..26037724 | 16..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:07 Download gff for
BS04484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862879..21863446 | 16..585 | 99 | | Minus |
BS04484.5prime Sequence
591 bp (590 high quality bases) assembled on 2005-12-01
> BS04484.5prime
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGTAAAAGCTTTCTAGACC
BS04484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8361-PA | 561 | HLHm7-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 21..122 | 31..132 | 360 | 94.1 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 32..129 | 340 | 93.8 | Plus |
CG8346-PA | 675 | HLHm3-RA | 25..115 | 47..137 | 255 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..687 | 17..578 | 2810 | 100 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 32..145 | 405 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037724 | 17..578 | 2810 | 100 | Plus |
3R | 32079331 | 3R | 25999963..26000069 | 31..137 | 430 | 93.5 | Plus |
3R | 32079331 | 3R | 26005765..26005878 | 145..32 | 405 | 90.4 | Minus |
3R | 32079331 | 3R | 26022029..26022142 | 32..145 | 375 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:38:03 has no hits.
BS04484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:48 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:42 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8361-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:51 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..687 | 9..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:04:42 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..687 | 9..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:04:42 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037157..26037724 | 9..578 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:51 Download gff for
BS04484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862879..21863446 | 9..578 | 99 | | Plus |
BS04484.complete Sequence
593 bp (593 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634960
> BS04484.complete
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGTAAAAGCTTTCTAGACCAT
BS04484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 561 | CG8361-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 21..127 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 16..129 | 32..145 | 405 | 90.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..687 | 17..578 | 2810 | 100 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 32..145 | 405 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037724 | 17..578 | 2810 | 100 | Plus |
3R | 32079331 | 3R | 25999963..26000069 | 31..137 | 430 | 93.5 | Plus |
3R | 32079331 | 3R | 26005765..26005878 | 145..32 | 405 | 90.4 | Minus |
3R | 32079331 | 3R | 26022029..26022142 | 32..145 | 375 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:07 has no hits.
BS04484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:58 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:06 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 120..687 | 9..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:52 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 126..684 | 17..575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:58 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 120..687 | 9..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:52 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 126..684 | 17..575 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:52 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037163..26037721 | 17..575 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:52 Download gff for
BS04484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862885..21863443 | 17..575 | 100 | | Plus |
BS04484.pep Sequence
Translation from 16 to 576
> BS04484.pep
MATKYEMSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGDA
KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALAS
LPRVDVAFGTTLMTHLGMRLNQLEQPMEQPQAVNTPLSIVCGSSSSSSTY
SSASSCSSISPVSSGYASDNESLLQISSPGQVWRPW*
BS04484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 1..186 | 1..186 | 945 | 100 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 6..186 | 428 | 48.7 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 1..195 | 1..186 | 412 | 46.3 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 4..224 | 6..186 | 323 | 38.5 | Plus |
E(spl)m8-HLH-PA | 179 | CG8365-PA | 5..179 | 8..186 | 306 | 40.7 | Plus |