Clone BS04485 Report

Search the DGRC for BS04485

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptMes4-RA
Protein status:BS04485.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04485.3prime Sequence

498 bp (497 high quality bases) assembled on 2005-12-01

> BS04485.3prime
ATGGTCTAGAAAGCTTTCAAAAGTTCATGGCTCCATCAAGGAATAGCAAA
CTGTCCACAGCAGAAATGGCCATATCCACGTCCCTCTTTTGTATGGTTTT
CTTTTTGGACTGCGCCGTGTAGGTATATGATTCCCGTGACAACGAGGCTA
TGAATAGTTCCACTGCCTTCGCCACTATGAACACGGCCTCATTGTTGGCC
ATATGCAGATCCGGATCTAGTTTCATTATGTTCCGTATCCTGGCCAACGG
CAGTTGTGTCATCTTGGCTTCGTTATCAGCAGGGGCCTTGTTGCCATTCG
TCACTGGTTTTTCTGTCAATTGTTCTGTTGTAGATTCTGCCTCAGGATTA
TCCGGCGATTCCTCGGTGATTTCCAAAGGCTCTTCTGTTTCCGCTAGCTC
CGCCTCCTCAGTCTCCATGGCCTGCTGATGCTCCAAGTCCTGTTCTTCCG
AGAATTCAGCCTCAAATAGTTCCTCGCTGGCCATGTCGACTGATAACT

BS04485.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11301-PA 468 Mes4-RA 1..468 484..17 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..534 484..16 2345 100 Minus
Mes4-RA 683 CG11301-RA 66..534 484..16 2345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412376 307..16 1460 100 Minus
2R 25286936 2R 22411854..22412034 484..304 905 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:36 has no hits.

BS04485.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:49 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:43 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11301-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:03 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 16..496 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:28 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 16..496 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:28 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22411842..22412034 304..496 97 -> Minus
2R 22412089..22412376 16..303 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:03 Download gff for BS04485.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299347..18299539 304..496 97 -> Minus
arm_2R 18299594..18299881 16..303 100   Minus

BS04485.5prime Sequence

498 bp (497 high quality bases) assembled on 2005-12-01

> BS04485.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTTGAAAGCTTTCTAGACC

BS04485.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11301-PA 468 Mes4-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..534 17..485 2345 100 Plus
Mes4-RA 683 CG11301-RA 66..534 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412376 194..485 1460 100 Plus
2R 25286936 2R 22411854..22412034 17..197 905 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:38:52 has no hits.

BS04485.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:50 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:44 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11301-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:22 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 5..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:53 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 5..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22411842..22412034 5..197 97 -> Plus
2R 22412089..22412376 198..485 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:22 Download gff for BS04485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299347..18299539 5..197 97 -> Plus
arm_2R 18299594..18299881 198..485 100   Plus

BS04485.complete Sequence

500 bp (500 high quality bases) assembled on 2005-09-13

> BS04485.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTTGAAAGCTTTCTAGACCAT

BS04485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 468 CG11301-PB 1..468 17..484 2340 100 Plus
Mes4-RA 468 CG11301-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..534 17..485 2345 100 Plus
Mes4-RA 683 CG11301-RA 66..534 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412376 194..485 1460 100 Plus
2R 25286936 2R 22411854..22412034 17..197 905 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:35:39 has no hits.

BS04485.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:02 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 36..516 5..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:03 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 66..532 17..483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:36 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 36..516 5..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:13 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 66..532 17..483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:13 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22411854..22412034 17..197 100 -> Plus
2R 22412089..22412374 198..483 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:03 Download gff for BS04485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299359..18299539 17..197 100 -> Plus
arm_2R 18299594..18299879 198..483 100   Plus

BS04485.pep Sequence

Translation from 16 to 483

> BS04485.pep
MASEELFEAEFSEEQDLEHQQAMETEEAELAETEEPLEITEESPDNPEAE
STTEQLTEKPVTNGNKAPADNEAKMTQLPLARIRNIMKLDPDLHMANNEA
VFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDSLLFLD
GAMNF*

BS04485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-PB 155 CG11301-PB 1..155 1..155 768 100 Plus
Mes4-PA 155 CG11301-PA 1..155 1..155 768 100 Plus
Nf-YC-PA 601 CG3075-PA 148..225 72..149 156 42.3 Plus