Clone Sequence Records
BS04485.3prime Sequence
498 bp (497 high quality bases) assembled on 2005-12-01
> BS04485.3prime
ATGGTCTAGAAAGCTTTCAAAAGTTCATGGCTCCATCAAGGAATAGCAAA
CTGTCCACAGCAGAAATGGCCATATCCACGTCCCTCTTTTGTATGGTTTT
CTTTTTGGACTGCGCCGTGTAGGTATATGATTCCCGTGACAACGAGGCTA
TGAATAGTTCCACTGCCTTCGCCACTATGAACACGGCCTCATTGTTGGCC
ATATGCAGATCCGGATCTAGTTTCATTATGTTCCGTATCCTGGCCAACGG
CAGTTGTGTCATCTTGGCTTCGTTATCAGCAGGGGCCTTGTTGCCATTCG
TCACTGGTTTTTCTGTCAATTGTTCTGTTGTAGATTCTGCCTCAGGATTA
TCCGGCGATTCCTCGGTGATTTCCAAAGGCTCTTCTGTTTCCGCTAGCTC
CGCCTCCTCAGTCTCCATGGCCTGCTGATGCTCCAAGTCCTGTTCTTCCG
AGAATTCAGCCTCAAATAGTTCCTCGCTGGCCATGTCGACTGATAACT
BS04485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11301-PA | 468 | Mes4-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..534 | 484..16 | 2345 | 100 | Minus |
Mes4-RA | 683 | CG11301-RA | 66..534 | 484..16 | 2345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412376 | 307..16 | 1460 | 100 | Minus |
2R | 25286936 | 2R | 22411854..22412034 | 484..304 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:36 has no hits.
BS04485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:49 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:43 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11301-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:03 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 16..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:28 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 16..496 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:28 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411842..22412034 | 304..496 | 97 | -> | Minus |
2R | 22412089..22412376 | 16..303 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:03 Download gff for
BS04485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299347..18299539 | 304..496 | 97 | -> | Minus |
arm_2R | 18299594..18299881 | 16..303 | 100 | | Minus |
BS04485.5prime Sequence
498 bp (497 high quality bases) assembled on 2005-12-01
> BS04485.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTTGAAAGCTTTCTAGACC
BS04485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11301-PA | 468 | Mes4-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..534 | 17..485 | 2345 | 100 | Plus |
Mes4-RA | 683 | CG11301-RA | 66..534 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412376 | 194..485 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 22411854..22412034 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:38:52 has no hits.
BS04485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:50 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:44 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11301-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:22 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 5..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:53 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 5..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411842..22412034 | 5..197 | 97 | -> | Plus |
2R | 22412089..22412376 | 198..485 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:22 Download gff for
BS04485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299347..18299539 | 5..197 | 97 | -> | Plus |
arm_2R | 18299594..18299881 | 198..485 | 100 | | Plus |
BS04485.complete Sequence
500 bp (500 high quality bases) assembled on 2005-09-13
> BS04485.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTTGAAAGCTTTCTAGACCAT
BS04485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 468 | CG11301-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
Mes4-RA | 468 | CG11301-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..534 | 17..485 | 2345 | 100 | Plus |
Mes4-RA | 683 | CG11301-RA | 66..534 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412376 | 194..485 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 22411854..22412034 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:35:39 has no hits.
BS04485.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:02 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 36..516 | 5..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:03 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 66..532 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:36 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 36..516 | 5..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:13 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 66..532 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:13 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411854..22412034 | 17..197 | 100 | -> | Plus |
2R | 22412089..22412374 | 198..483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:03 Download gff for
BS04485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299359..18299539 | 17..197 | 100 | -> | Plus |
arm_2R | 18299594..18299879 | 198..483 | 100 | | Plus |
BS04485.pep Sequence
Translation from 16 to 483
> BS04485.pep
MASEELFEAEFSEEQDLEHQQAMETEEAELAETEEPLEITEESPDNPEAE
STTEQLTEKPVTNGNKAPADNEAKMTQLPLARIRNIMKLDPDLHMANNEA
VFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDSLLFLD
GAMNF*
BS04485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-PB | 155 | CG11301-PB | 1..155 | 1..155 | 768 | 100 | Plus |
Mes4-PA | 155 | CG11301-PA | 1..155 | 1..155 | 768 | 100 | Plus |
Nf-YC-PA | 601 | CG3075-PA | 148..225 | 72..149 | 156 | 42.3 | Plus |