Clone Sequence Records
BS04486.3prime Sequence
837 bp (726 high quality bases) assembled on 2005-12-01
> BS04486.3prime
ATGGTCTAGAAAGCTTTTACGCTCCCCAATGATCGTTGCCATTATCATAA
GGTGAACTACTTCCGCCGCTCCAGGCACAGCATCCATTGCCATTTTGACC
CACGGAGCTCTCCCGCAGCATGGCCTGCAGGTGATTAATGTAGTTGATGG
CAATCCTCAAACTCTCGATTTTGGAGTACTTTTTCCCATTTGGCTTGGAT
ATGGGTAGCTTGGAGCGCAGTAAGTCAAAGGCTCGGTTCATGTCCCGCAT
CCTGGTTCTTTCCCGATCGCAGGCGGTGCGTCTATAGTCCTTCTCCATTT
GCAGCGCCTTCTCCCGCCAGGCGGGATTGTGCTCTTTGGCGATGTCCACC
TCAGTGCTATTGGCTATACTACCGCCGCTATAGCTCATATACATGGGCGG
AGGTACCAGCTCACTGGGTTTGTTGCATTCCAAGCCCACTGGCGAACCGG
TGGCCACCTGGCCAGCATGCCACATCGACACCGGCTGAGGTATAACGCTA
TATGTGGGTGGCAACAGACCCATATTGTGCGCTTCCTTCTCGTAGCCACC
CATCACGCTGGGTGAGTAGCTATGCGGATGAGTTGGCGCATATGCCAGCA
AGCCTGCTCCATCCGCGGTTAGGGTGTAGTTGAGACTAACTGCCGGACAA
CTGGACGATTGAGGGGCACCGAGCTCTAGAAGAACGGGCTGTTCCGATGA
TTCCGCCTCGCCCTCGGATCCACCGCTCAAATAGGGTCCACCGGTGGTGG
CTGATACGGGCACCAAAACTGGCGGTGGATCACCCGGTACGCCGGCCGTG
GAGCTCAGCAGTTGATCCGTCATGTCGACTGATAACT
BS04486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12952-PA | 807 | sage-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
| CG12952-PB | 537 | sage-RB | 1..537 | 553..17 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1207 | 823..17 | 4035 | 100 | Minus |
| sage-RA | 1105 | CG12952-RA | 78..884 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 155..823 | 3345 | 100 | Plus |
| 3R | 32079331 | 3R | 9262875..9263015 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:38:26 has no hits.
BS04486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:52 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:45 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12952-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:01 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 11..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:02 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 11..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:02 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262872..9263013 | 11..155 | 97 | <- | Plus |
| 3R | 9263075..9263749 | 156..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:01 Download gff for
BS04486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088594..5088735 | 11..155 | 97 | <- | Plus |
| arm_3R | 5088797..5089471 | 156..835 | 99 | | Plus |
BS04486.5prime Sequence
837 bp (819 high quality bases) assembled on 2005-12-01
> BS04486.5prime
GAAGTTATCAGTCGACATGACGGATCAACTGCTGAGCTCCACGGCCGGCG
TACCGGGTGATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGT
GGACCCTATTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACA
GCCCGTTCTTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAG
TTAGTCTCAACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATAT
GCGCCAACTCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGA
GAAGGAAGCGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATAC
CTCAGCCGGTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCA
GTGGGCTTGGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTA
TATGAGCTATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCG
CCAAAGAGCACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAG
GACTATAGACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACAT
GAACCGAGCCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAA
ATGGGAAAAAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTAC
ATTAATCACCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGG
CAATGGATGCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATG
GCAACGATCATTGGGGAGCGTAAAAGCTTTCTAGACC
BS04486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12952-PA | 807 | sage-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG12952-PB | 537 | sage-RB | 1..537 | 287..823 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1207 | 17..823 | 4035 | 100 | Plus |
| sage-RA | 1105 | CG12952-RA | 78..884 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 685..17 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 9262875..9263015 | 823..683 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:07:20 has no hits.
BS04486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:53 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:47 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12952-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:28:01 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 5..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:38 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 5..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:38 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262872..9263013 | 685..829 | 97 | <- | Minus |
| 3R | 9263075..9263749 | 5..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:28:01 Download gff for
BS04486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088594..5088735 | 685..829 | 97 | <- | Minus |
| arm_3R | 5088797..5089471 | 5..684 | 99 | | Minus |
BS04486.complete Sequence
839 bp assembled on 2007-10-17
GenBank Submission: KX796651
> BS04486.complete
GAAGTTATCAGTCGACATGACGGATCAACTGCTGAGCTCCACGGCCGGCG
TACCGGGTGATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGT
GGACCCTATTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACA
GCCCGTTCTTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAG
TTAGTCTCAACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATAT
GCGCCAACTCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGA
GAAGGAAGCGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATAC
CTCAGCCGGTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCA
GTGGGCTTGGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTA
TATGAGCTATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCG
CCAAAGAGCACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAG
GACTATAGACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACAT
GAACCGAGCCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAA
ATGGGAAAAAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTAC
ATTAATCACCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGG
CAATGGATGCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATG
GCAACGATCATTGGGGAGCGTAAAAGCTTTCTAGACCAT
BS04486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 807 | CG12952-PC | 1..807 | 17..823 | 4035 | 100 | Plus |
| sage-RA | 807 | CG12952-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1207 | 17..823 | 4035 | 100 | Plus |
| sage-RA | 1105 | CG12952-RA | 78..884 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 685..17 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 9262875..9263015 | 823..683 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:50:18 has no hits.
BS04486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:08 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:07 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..810 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:59 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 78..882 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:42 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:43 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 78..882 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:43 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262877..9263013 | 685..821 | 100 | <- | Minus |
| 3R | 9263075..9263742 | 17..684 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:59 Download gff for
BS04486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088599..5088735 | 685..821 | 100 | <- | Minus |
| arm_3R | 5088797..5089464 | 17..684 | 100 | | Minus |
BS04486.pep Sequence
Translation from 16 to 822
> BS04486.pep
MTDQLLSSTAGVPGDPPPVLVPVSATTGGPYLSGGSEGEAESSEQPVLLE
LGAPQSSSCPAVSLNYTLTADGAGLLAYAPTHPHSYSPSVMGGYEKEAHN
MGLLPPTYSVIPQPVSMWHAGQVATGSPVGLECNKPSELVPPPMYMSYSG
GSIANSTEVDIAKEHNPAWREKALQMEKDYRRTACDRERTRMRDMNRAFD
LLRSKLPISKPNGKKYSKIESLRIAINYINHLQAMLRESSVGQNGNGCCA
WSGGSSSPYDNGNDHWGA*
BS04486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-PC | 268 | CG12952-PC | 1..268 | 1..268 | 1431 | 100 | Plus |
| sage-PA | 268 | CG12952-PA | 1..268 | 1..268 | 1431 | 100 | Plus |
