Clone BS04487 Report

Search the DGRC for BS04487

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG8145-RA
Protein status:BS04487.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04487.3prime Sequence

918 bp (813 high quality bases) assembled on 2005-12-01

> BS04487.3prime
ATGGTCTAGAAAGCTTTTAAACTTCCTGACACAAAAGGTCGAATTGCGAC
TGCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCA
GGTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGG
TGACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCG
AGATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTT
CCTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGG
TGAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGG
ACCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCA
GTAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTG
CCTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGA
TATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTT
ATTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGG
GTAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCC
TCCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCAC
CGGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTAC
TCTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGC
CCCCTTCGCCGCTTGGTCGTTTTCTTCTTGGTTGAGGGATCATTGGGTTC
CACCTTCTTTTCCTCGCTGGCTCCCACTTTATCACTTTGTAGCAATGCCA
CCCATTTCTTCTGCTGCA

BS04487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 212..1113 918..17 4485 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 280..1181 918..17 4495 99.9 Minus
CG8145-RC 1862 CG8145-RC 280..1181 918..17 4495 99.9 Minus
CG8145-RA 1217 CG8145-RA 280..1181 918..17 4495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723524..8723951 918..491 2125 99.8 Minus
3R 32079331 3R 8724134..8724382 491..243 1245 100 Minus
3R 32079331 3R 8724448..8724676 245..17 1145 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:33:57 has no hits.

BS04487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:54 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 213..1113 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:48 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 213..1113 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:13 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 281..1188 8..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:46 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 281..1188 8..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:46 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8724134..8724382 243..491 100 -> Minus
3R 8724451..8724683 8..242 98   Minus
3R 8723525..8723950 492..917 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:13 Download gff for BS04487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4549247..4549672 492..917 99 -> Minus
arm_3R 4549856..4550104 243..491 100 -> Minus
arm_3R 4550173..4550405 8..242 98   Minus

BS04487.5prime Sequence

741 bp (248 high quality bases) assembled on 2005-12-01

> BS04487.5prime
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAAAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAAGCACACAATCTCACCCATCACACCTTGGA

BS04487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 1..707 35..741 3485 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 51..775 17..741 3595 99.7 Plus
CG8145-RC 1862 CG8145-RC 51..775 17..741 3595 99.7 Plus
CG8145-RA 1217 CG8145-RA 51..775 17..741 3595 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723433..8723951 155..673 2580 99.8 Plus
3R 32079331 3R 8723224..8723361 17..154 690 100 Plus
3R 32079331 3R 8724134..8724202 673..741 330 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 05:38:45 has no hits.

BS04487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:55 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..706 35..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:50 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..706 35..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:20:29 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 43..774 8..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:06 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 43..774 8..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:06 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8723216..8723361 8..154 97 -> Plus
3R 8723433..8723950 155..672 99 -> Plus
3R 8724134..8724201 673..740 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:20:29 Download gff for BS04487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4548938..4549083 8..154 97 -> Plus
arm_3R 4549155..4549672 155..672 99 -> Plus
arm_3R 4549856..4549923 673..740 98   Plus

BS04487.complete Sequence

1163 bp assembled on 2007-07-13

GenBank Submission: KX797302

> BS04487.complete
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGC
GGCAAGGCCTTCACCAGGACCTGCATTCTGAAGGCCCACATGGCGGTCCA
CCAAGTTGTAAGGAAGTATAGTTGCGATGTCTGCGATCGTTCGTTCAGCC
TGAAGAAACATCTCGCTACGCACTTCATCTCCAATACCCACAAGCGGAAT
GCTGAAGCCGTCACCTCGTCGTCGGAGTACATGTCCATGCTCAGTTTTGA
ATCGGATGAAACCTGGTCCCAAGGCACTCCACTGACCACTTCCATTGACG
AGGATCTGGTGCAGTCGCAATTCGACCTTTTGTGTCAGGAAGTTTAAAAG
CTTTCTAGACCAT

BS04487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1113 CG8145-PB 1..1113 35..1147 5565 100 Plus
CG8145-RC 1113 CG8145-PC 1..1113 35..1147 5565 100 Plus
CG8145-RA 1113 CG8145-PA 1..1113 35..1147 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 51..1181 17..1147 5655 100 Plus
CG8145-RC 1862 CG8145-RC 51..1181 17..1147 5655 100 Plus
CG8145-RA 1217 CG8145-RA 51..1181 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723433..8723951 155..673 2595 100 Plus
3R 32079331 3R 8724134..8724382 673..921 1245 100 Plus
3R 32079331 3R 8724448..8724676 919..1147 1145 100 Plus
3R 32079331 3R 8723224..8723361 17..154 690 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:53:33 has no hits.

BS04487.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:46 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1113 35..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:16 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1138 17..1156 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:02 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 53..1179 19..1145 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:46 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1138 17..1156 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:22 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 53..1179 19..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:22 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8723226..8723361 19..154 100 -> Plus
3R 8723433..8723950 155..672 100 -> Plus
3R 8724134..8724382 673..921 100 -> Plus
3R 8724451..8724674 922..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:02 Download gff for BS04487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4548948..4549083 19..154 100 -> Plus
arm_3R 4549155..4549672 155..672 100 -> Plus
arm_3R 4549856..4550104 673..921 100 -> Plus
arm_3R 4550173..4550396 922..1145 100   Plus

BS04487.pep Sequence

Translation from 34 to 1146

> BS04487.pep
MLINVCRVCGRSRLCPKAVELFKPGRQDILRRIQLITGILLQQIPNAPDM
VCFCCQTDLQSAMIFRRQCILQQKKWVPLLQSDKVGASEEKKVEPNDPST
KKKTTKRRRGRPRMPLEIVDIVVTNESKASAGESVGGDEFDQPVEISNEP
DATDSDVNLEEIDLPDEDGLESDHDLPNVQIHKCDTCGIIKNNKSSLVRH
QFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFS
VVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVC
DRSFSLKKHLATHFISNTHKRNAEAVTSSSEYMSMLSFESDETWSQGTPL
TTSIDEDLVQSQFDLLCQEV*

BS04487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PB 370 CG8145-PB 1..370 1..370 1978 100 Plus
CG8145-PC 370 CG8145-PC 1..370 1..370 1978 100 Plus
CG8145-PA 370 CG8145-PA 1..370 1..370 1978 100 Plus
CG8159-PB 399 CG8159-PB 1..333 1..324 596 39.1 Plus
CG11762-PA 312 CG11762-PA 1..308 1..324 569 36.4 Plus