Clone Sequence Records
BS04487.3prime Sequence
918 bp (813 high quality bases) assembled on 2005-12-01
> BS04487.3prime
ATGGTCTAGAAAGCTTTTAAACTTCCTGACACAAAAGGTCGAATTGCGAC
TGCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCA
GGTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGG
TGACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCG
AGATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTT
CCTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGG
TGAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGG
ACCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCA
GTAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTG
CCTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGA
TATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTT
ATTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGG
GTAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCC
TCCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCAC
CGGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTAC
TCTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGC
CCCCTTCGCCGCTTGGTCGTTTTCTTCTTGGTTGAGGGATCATTGGGTTC
CACCTTCTTTTCCTCGCTGGCTCCCACTTTATCACTTTGTAGCAATGCCA
CCCATTTCTTCTGCTGCA
BS04487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 212..1113 | 918..17 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 280..1181 | 918..17 | 4495 | 99.9 | Minus |
CG8145-RC | 1862 | CG8145-RC | 280..1181 | 918..17 | 4495 | 99.9 | Minus |
CG8145-RA | 1217 | CG8145-RA | 280..1181 | 918..17 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723524..8723951 | 918..491 | 2125 | 99.8 | Minus |
3R | 32079331 | 3R | 8724134..8724382 | 491..243 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 8724448..8724676 | 245..17 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:33:57 has no hits.
BS04487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:54 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 213..1113 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:48 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 213..1113 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:13 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 281..1188 | 8..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:46 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 281..1188 | 8..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:46 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8724134..8724382 | 243..491 | 100 | -> | Minus |
3R | 8724451..8724683 | 8..242 | 98 | | Minus |
3R | 8723525..8723950 | 492..917 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:13 Download gff for
BS04487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4549247..4549672 | 492..917 | 99 | -> | Minus |
arm_3R | 4549856..4550104 | 243..491 | 100 | -> | Minus |
arm_3R | 4550173..4550405 | 8..242 | 98 | | Minus |
BS04487.5prime Sequence
741 bp (248 high quality bases) assembled on 2005-12-01
> BS04487.5prime
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAAAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAAGCACACAATCTCACCCATCACACCTTGGA
BS04487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 1..707 | 35..741 | 3485 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 51..775 | 17..741 | 3595 | 99.7 | Plus |
CG8145-RC | 1862 | CG8145-RC | 51..775 | 17..741 | 3595 | 99.7 | Plus |
CG8145-RA | 1217 | CG8145-RA | 51..775 | 17..741 | 3595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723433..8723951 | 155..673 | 2580 | 99.8 | Plus |
3R | 32079331 | 3R | 8723224..8723361 | 17..154 | 690 | 100 | Plus |
3R | 32079331 | 3R | 8724134..8724202 | 673..741 | 330 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:45 has no hits.
BS04487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:55 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..706 | 35..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:50 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..706 | 35..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:20:29 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 43..774 | 8..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:06 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 43..774 | 8..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:06 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8723216..8723361 | 8..154 | 97 | -> | Plus |
3R | 8723433..8723950 | 155..672 | 99 | -> | Plus |
3R | 8724134..8724201 | 673..740 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:20:29 Download gff for
BS04487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4548938..4549083 | 8..154 | 97 | -> | Plus |
arm_3R | 4549155..4549672 | 155..672 | 99 | -> | Plus |
arm_3R | 4549856..4549923 | 673..740 | 98 | | Plus |
BS04487.complete Sequence
1163 bp assembled on 2007-07-13
GenBank Submission: KX797302
> BS04487.complete
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGC
GGCAAGGCCTTCACCAGGACCTGCATTCTGAAGGCCCACATGGCGGTCCA
CCAAGTTGTAAGGAAGTATAGTTGCGATGTCTGCGATCGTTCGTTCAGCC
TGAAGAAACATCTCGCTACGCACTTCATCTCCAATACCCACAAGCGGAAT
GCTGAAGCCGTCACCTCGTCGTCGGAGTACATGTCCATGCTCAGTTTTGA
ATCGGATGAAACCTGGTCCCAAGGCACTCCACTGACCACTTCCATTGACG
AGGATCTGGTGCAGTCGCAATTCGACCTTTTGTGTCAGGAAGTTTAAAAG
CTTTCTAGACCAT
BS04487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1113 | CG8145-PB | 1..1113 | 35..1147 | 5565 | 100 | Plus |
CG8145-RC | 1113 | CG8145-PC | 1..1113 | 35..1147 | 5565 | 100 | Plus |
CG8145-RA | 1113 | CG8145-PA | 1..1113 | 35..1147 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 51..1181 | 17..1147 | 5655 | 100 | Plus |
CG8145-RC | 1862 | CG8145-RC | 51..1181 | 17..1147 | 5655 | 100 | Plus |
CG8145-RA | 1217 | CG8145-RA | 51..1181 | 17..1147 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723433..8723951 | 155..673 | 2595 | 100 | Plus |
3R | 32079331 | 3R | 8724134..8724382 | 673..921 | 1245 | 100 | Plus |
3R | 32079331 | 3R | 8724448..8724676 | 919..1147 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 8723224..8723361 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:53:33 has no hits.
BS04487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:46 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1113 | 35..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:16 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1138 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:02 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 53..1179 | 19..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:46 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1138 | 17..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:22 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 53..1179 | 19..1145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:22 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8723226..8723361 | 19..154 | 100 | -> | Plus |
3R | 8723433..8723950 | 155..672 | 100 | -> | Plus |
3R | 8724134..8724382 | 673..921 | 100 | -> | Plus |
3R | 8724451..8724674 | 922..1145 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:02 Download gff for
BS04487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4548948..4549083 | 19..154 | 100 | -> | Plus |
arm_3R | 4549155..4549672 | 155..672 | 100 | -> | Plus |
arm_3R | 4549856..4550104 | 673..921 | 100 | -> | Plus |
arm_3R | 4550173..4550396 | 922..1145 | 100 | | Plus |
BS04487.pep Sequence
Translation from 34 to 1146
> BS04487.pep
MLINVCRVCGRSRLCPKAVELFKPGRQDILRRIQLITGILLQQIPNAPDM
VCFCCQTDLQSAMIFRRQCILQQKKWVPLLQSDKVGASEEKKVEPNDPST
KKKTTKRRRGRPRMPLEIVDIVVTNESKASAGESVGGDEFDQPVEISNEP
DATDSDVNLEEIDLPDEDGLESDHDLPNVQIHKCDTCGIIKNNKSSLVRH
QFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFS
VVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVC
DRSFSLKKHLATHFISNTHKRNAEAVTSSSEYMSMLSFESDETWSQGTPL
TTSIDEDLVQSQFDLLCQEV*
BS04487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PB | 370 | CG8145-PB | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8145-PC | 370 | CG8145-PC | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8145-PA | 370 | CG8145-PA | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8159-PB | 399 | CG8159-PB | 1..333 | 1..324 | 596 | 39.1 | Plus |
CG11762-PA | 312 | CG11762-PA | 1..308 | 1..324 | 569 | 36.4 | Plus |