Clone BS04488 Report

Search the DGRC for BS04488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG18476-RA
Protein status:BS04488.pep: full length peptide match
Sequenced Size:2843

Clone Sequence Records

BS04488.3prime Sequence

842 bp (837 high quality bases) assembled on 2005-12-01

> BS04488.3prime
ATGGTCTAGAAAGCTTTTACTTTTGGCGTCTCAGCCACGCTTCCACCTCG
TCGAAGTGACGCCGCATCAACCGATGCTTCTCCAGCGTGCTGCTCTGGAT
GAAGCGCTCGCCACAGGTGCCGCACACGAAAGGACATTCGCCGGTGTGCT
GCTGGAGATGAAGCTTCAGGTCCTTGGCCTGACGGTAACTCTTCTCGCAG
TAGGTGCATTTGTGCGGCTTTAGGCCGCTGTGCGTAAGCATATGGCGCTT
GAGCTTATCGGAGCGGGCAAAGTCCTTGCCACAGACGGTGCAGTGGAATG
GCTTCTCGCCGGTGTGCATCCGGCGGTGCGAGGCCAGCTCTGAGTGGCGG
GGAAAGGCCATTTCGCACAGATCGCACTTGAAGGGCTTCTCGCCAGTGTG
GCGTCGCATATGGGTCACAAGAGCGGCGGCTGATCTCGTCTCCATTCCGC
ACAGGGAGCAGAGGAAGCGCTTAATTGCCTCCTTGCGCTTGCGGTCGCCG
TTAATGTGCACATCGCGAATATGATTGTTCAGGCGCGACTTCATCTGGTA
CGTGCGATCGCAGTGTGGACACTGTAGCAGCGGTATTCCGTCCTCAGTGG
CATCCTTTTCCAGGTCACCGGTCCCTTGCGTGTGTCTGTCGCCAGTCGGA
TTGCTGACGGAAGACTTGCTGTGTTGCAGGAGAATGTGCTGCTCTAGGTT
CTCTGGCCACATAAACTTGTAGGAACACTTGCCACATGCATGCTTCTTTT
CTGTACTACTACACTGACCTTGCCGGTGGTGGTCCATAATGCTCTTGGAG
ACACATTTAAAGATGCAGTCGTCGCATTCGTGTGGCATTTTG

BS04488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 2811 CG18476-RA 1986..2811 842..17 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 2086..2911 842..17 4130 100 Minus
CG10669-RB 3310 CG10669-RB 2700..2754 413..359 185 89.1 Minus
CG10669-RA 3008 CG10669-RA 2700..2754 413..359 185 89.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11674955..11675733 17..795 3895 100 Plus
3R 32079331 3R 11675803..11675851 794..842 245 100 Plus
3R 32079331 3R 25331919..25331973 359..413 185 89.1 Plus
Blast to na_te.dros performed on 2015-01-30 15:53:45 has no hits.

BS04488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:56 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1986..2811 17..842 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:51 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1986..2811 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:20 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 2086..2911 17..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:04 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 2086..2911 17..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:04 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11674955..11675731 17..793 100 <- Plus
3R 11675803..11675851 794..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:20 Download gff for BS04488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7500677..7501453 17..793 100 <- Plus
arm_3R 7501525..7501573 794..842 100   Plus

BS04488.5prime Sequence

931 bp (817 high quality bases) assembled on 2005-12-01

> BS04488.5prime
GAAGTTATCAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACT
CCACGGACACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTAT
CCGGACAAGTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCT
GGATGCAACTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCA
CCAAAAAATTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCC
AACGAACTTCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAAC
CGACTGTCTGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGG
AAGTCAAGCTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACT
ATCACTTGTTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAA
AAAGTCGGTGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGG
AACCCAGAAGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTT
GAAGACGAAGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAA
GTGGAAAACAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGA
GTTTTAAACGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAG
CCAGAAACTCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCG
CAGCGAAGCCCTCGAAGCACACCTAANAATTCACCGGAATTCAAAACGAT
CGGCCAACATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTC
TGCAAACCGCATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCA
ATACAACAAGATTGCTGATCTGCGCCGGCAT

BS04488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 2811 CG18476-RA 1..915 17..931 4556 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 96..1015 12..931 4574 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11677405..11677817 561..149 2065 100 Minus
3R 32079331 3R 11676980..11677349 931..562 1839 99.7 Minus
3R 32079331 3R 11677885..11678021 148..12 670 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 01:28:07 has no hits.

BS04488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:57 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:52 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:23 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 90..1015 7..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:38 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 90..1015 7..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:38 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11676980..11677349 562..931 99 <- Minus
3R 11677405..11677817 149..561 100 <- Minus
3R 11677885..11678027 7..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:23 Download gff for BS04488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7502702..7503071 562..931 99 <- Minus
arm_3R 7503127..7503539 149..561 100 <- Minus
arm_3R 7503607..7503749 7..148 97   Minus

BS04488.complete Sequence

2843 bp assembled on 2008-08-15

GenBank Submission: KX798462

> BS04488.complete
GAAGTTATCAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACT
CCACGGACACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTAT
CCGGACAAGTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCT
GGATGCAACTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCA
CCAAAAAATTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCC
AACGAACTTCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAAC
CGACTGTCTGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGG
AAGTCAAGCTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACT
ATCACTTGTTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAA
AAAGTCGGTGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGG
AACCCAGAAGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTT
GAAGACGAAGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAA
GTGGAAAACAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGA
GTTTTAAACGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAG
CCAGAAACTCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCG
CAGCGAAGCCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGAT
CGGCCAACATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTC
TGCAAACCGCATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCA
ATACAACAAGATTGCTGATCTGCGCCGGCATTTGGAGGAGCACCCCGATA
TTGTTAGCCTGTGCGGTCGGCCAAATATGGAGCCCCATGAGCTGGCAGAG
CTGTTTTATCCCGATTCAAAGGACCTCAGTGAGGAGCAGTTAATCAACTT
GATTCGCAAGGATCTAGCGGCGGGTATCTATCAGCGTTTCTATTCGATAA
CGAACCAAAGTGGCTACGAAATGGATCTGGACAGCTCGGAGACGGACAGC
GACCTGGACGGAGATCACGATGACCAGCACAAGAGGCGAAAGAAGTCGCG
CAAAGCCACCTACAGCTGCGAGCTGTGCCAGCAAAAGTTCCCGCGAAAAT
ATCAGCTTTATGACCATCAGCGACAAAGTCACAGTTGGTCAGACGCTCCT
CACGTCTGCGGGCGATGTGATGGACGTTTTGTAAGTCTGCAGCTGCTGCG
CCACCACAACGAGTCGCAGTGTAGGAATGCACAAAAGCGATTTCTCTGCC
ACAAATGCCCGCTACGCTTTCGCTGGAAACACAACCTGAAAACACACTTC
CGCGAACACAGGATTACAAATCAAACGTTTGAATGTTCCGAGTGCAAACG
GGTCTTTGATAAAAAGAAATCCCTCACCGTTCACCTGCTTAGCGTACATG
CGGAGGAATCCAAGCTGATTCCCTGCCAGTGGTGCAGTCGCAAATTCTAT
CGGCACGACTACTTGGTAAAACACTTGAAGCGACACGGTTTGAAAGAGCA
TGACATTCCCTTGGCAGAAACATTGATTGCTGCCACCTCGCGGCCAAACG
GAGCGAAGCGCATTACTTGCCGCATGTGCAATCTGCATTTCGAGCGTATT
GTTGATCTGCGAGCCCATATCCAGTTGGAGCTTAAGCTATCCCTGTCGCT
ACACCAGAGCTACGACTCCCCGCATAATTATTCAATAACAAACGAATCTG
GCTTTGAGCTGCAGCTGGAGGATTCGGAAACCGAAGACGAGATGCAGCCC
GGTGTGGGCAGTCGCCCCGTATATATTTGCGAGCTGTGCAGCGTGCAGTG
CAAGCGGAAGTTCGAAATGATCCAGCATCAGCGGACGATGCATCGCTTTG
ACAAAATGCCACACGAATGCGACGACTGCATCTTTAAATGTGTCTCCAAG
AGCATTATGGACCACCACCGGCAAGGTCAGTGTAGTAGTACAGAAAAGAA
GCATGCATGTGGCAAGTGTTCCTACAAGTTTATGTGGCCAGAGAACCTAG
AGCAGCACATTCTCCTGCAACACAGCAAGTCTTCCGTCAGCAATCCGACT
GGCGACAGACACACGCAAGGGACCGGTGACCTGGAAAAGGATGCCACTGA
GGACGGAATACCGCTGCTACAGTGTCCACACTGCGATCGCACGTACCAGA
TGAAGTCGCGCCTGAACAATCATATTCGCGATGTGCACATTAACGGCGAC
CGCAAGCGCAAGGAGGCAATTAAGCGCTTCCTCTGCTCCCTGTGCGGAAT
GGAGACGAGATCAGCCGCCGCTCTTGTGACCCATATGCGACGCCACACTG
GCGAGAAGCCCTTCAAGTGCGATCTGTGCGAAATGGCCTTTCCCCGCCAC
TCAGAGCTGGCCTCGCACCGCCGGATGCACACCGGCGAGAAGCCATTCCA
CTGCACCGTCTGTGGCAAGGACTTTGCCCGCTCCGATAAGCTCAAGCGCC
ATATGCTTACGCACAGCGGCCTAAAGCCGCACAAATGCACCTACTGCGAG
AAGAGTTACCGTCAGGCCAAGGACCTGAAGCTTCATCTCCAGCAGCACAC
CGGCGAATGTCCTTTCGTGTGCGGCACCTGTGGCGAGCGCTTCATCCAGA
GCAGCACGCTGGAGAAGCATCGGTTGATGCGGCGTCACTTCGACGAGGTG
GAAGCGTGGCTGAGACGCCAAAAGTAAAAGCTTTCTAGACCAT

BS04488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2811 CG18476-PA 1..2811 17..2827 14055 100 Plus
CG10669-RB 2802 CG10669-PB 2604..2658 2431..2485 185 89.1 Plus
CG10669-RA 2802 CG10669-PA 2604..2658 2431..2485 185 89.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-RA 2946 CG18476-RA 96..2911 12..2827 14065 100 Plus
CG10669-RB 3310 CG10669-RB 2700..2754 2431..2485 185 89.1 Plus
CG10669-RA 3008 CG10669-RA 2700..2754 2431..2485 185 89.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11676443..11677349 1468..562 4535 100 Minus
3R 32079331 3R 11674955..11675733 2827..2049 3895 100 Minus
3R 32079331 3R 11675803..11676384 2050..1469 2910 100 Minus
3R 32079331 3R 11677405..11677817 561..149 2065 100 Minus
3R 32079331 3R 11677885..11678021 148..12 670 99.3 Minus
3R 32079331 3R 25331919..25331973 2485..2431 185 89.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:31:27 has no hits.

BS04488.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:00 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 87..2908 7..2827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:32 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 101..2903 17..2819 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:59 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 98..2900 17..2819 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:05 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
CG18476-RA 101..2903 17..2819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:05 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11674963..11675731 2051..2819 100 <- Minus
3R 11675803..11676384 1469..2050 100 <- Minus
3R 11676443..11677349 562..1468 100 <- Minus
3R 11677405..11677817 149..561 100 <- Minus
3R 11677885..11678016 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:32 Download gff for BS04488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7500685..7501453 2051..2819 100 <- Minus
arm_3R 7501525..7502106 1469..2050 100 <- Minus
arm_3R 7502165..7503071 562..1468 100 <- Minus
arm_3R 7503127..7503539 149..561 100 <- Minus
arm_3R 7503607..7503738 17..148 100   Minus

BS04488.pep Sequence

Translation from 16 to 2826

> BS04488.pep
MKLPVICRTCDSTDTDNLLKLATPSKKYPDKLLSEILCELTEINLDATGS
QKFPQCLCSGCTKKLMGAYCYVKQAMAANELLMKHLKNGAAPTSTDCLQE
APMELCAEQHVEVKLETEDEDCGENDVTITCSELPEPDETDMESKKSVDP
LTMIETVKLEMEPRSVEKPAYDDPTSDFEDEDSLDNLPLYNRIQKWKTGR
KSVYKCHDCPRSFKRFDFLKRHEMRVHKPETRLYDCSLCIRKFSRSEALE
AHLKIHRNSKRSANISEHKKAKAVDLNLCKPHGYKLIECMICQSQYNKIA
DLRRHLEEHPDIVSLCGRPNMEPHELAELFYPDSKDLSEEQLINLIRKDL
AAGIYQRFYSITNQSGYEMDLDSSETDSDLDGDHDDQHKRRKKSRKATYS
CELCQQKFPRKYQLYDHQRQSHSWSDAPHVCGRCDGRFVSLQLLRHHNES
QCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECSECKRVFDKK
KSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLA
ETLIAATSRPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYD
SPHNYSITNESGFELQLEDSETEDEMQPGVGSRPVYICELCSVQCKRKFE
MIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQCSSTEKKHACGK
CSYKFMWPENLEQHILLQHSKSSVSNPTGDRHTQGTGDLEKDATEDGIPL
LQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKRFLCSLCGMETRSA
AALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCG
KDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPF
VCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQK*

BS04488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18476-PA 936 CG18476-PA 1..936 1..936 5121 100 Plus
CG11902-PB 1426 CG11902-PB 670..1408 200..927 1591 41.5 Plus
CG10669-PB 933 CG10669-PB 298..930 198..867 1447 41.4 Plus
CG10669-PA 933 CG10669-PA 298..930 198..867 1447 41.4 Plus
CG11902-PB 1426 CG11902-PB 416..1141 205..928 608 25.5 Plus
CG11902-PB 1426 CG11902-PB 6..788 6..900 598 24.7 Plus
crol-PB 891 CG14938-PB 220..671 398..929 482 26.2 Plus
CG10669-PB 933 CG10669-PB 147..904 378..927 374 21.8 Plus
CG10669-PA 933 CG10669-PA 147..904 378..927 374 21.8 Plus
CG10669-PB 933 CG10669-PB 573..932 200..543 237 25.7 Plus
CG10669-PA 933 CG10669-PA 573..932 200..543 237 25.7 Plus