Clone BS04490 Report

Search the DGRC for BS04490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31441-RA
Protein status:BS04490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04490.3prime Sequence

802 bp (779 high quality bases) assembled on 2005-12-01

> BS04490.3prime
ATGGTCTAGAAAGCTTCTAGACAATCCTAGCACTTTCAGCTCTTCGCTGG
TGTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCA
CTGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCT
CATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGG
CACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACT
GCTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGG
CGTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTAC
TTGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTG
CAGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGT
CACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCA
CTTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTG
CTCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCAT
TCTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCT
TCCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATC
CGTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGA
GTTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCC
AT

BS04490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 241..1026 802..17 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RB 1223 CG31441-RB 316..1103 802..15 3940 100 Minus
CG31441-RA 1219 CG31441-RA 312..1099 802..15 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236658..11237340 802..120 3415 100 Minus
3R 32079331 3R 11237400..11237504 119..15 525 100 Minus
Blast to na_te.dros performed on 2015-01-30 15:53:19 has no hits.

BS04490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:59 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 241..1026 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:54 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 241..1026 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:14 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 312..1101 11..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:01 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 312..1101 11..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:01 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236658..11237340 120..802 100 -> Minus
3R 11237400..11237498 21..119 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:14 Download gff for BS04490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062380..7063062 120..802 100 -> Minus
arm_3R 7063122..7063220 21..119 100 <- Minus

BS04490.5prime Sequence

891 bp (783 high quality bases) assembled on 2005-12-01

> BS04490.5prime
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCCCGTC

BS04490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1219 CG31441-RA 72..946 17..891 4360 99.9 Plus
CG31441-RB 1223 CG31441-RB 72..950 17..891 4310 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236550..11237292 149..891 3700 99.9 Plus
3R 32079331 3R 11236357..11236488 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:26:16 has no hits.

BS04490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:00 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:55 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:18:25 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..946 12..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:01 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..946 12..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:01 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236352..11236488 12..148 98 -> Plus
3R 11236550..11237292 149..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:18:25 Download gff for BS04490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062074..7062210 12..148 98 -> Plus
arm_3R 7062272..7063014 149..891 99   Plus

BS04490.complete Sequence

1058 bp (1058 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634961

> BS04490.complete
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCA
AAAACATGAGATGCTGCACACTAATCAGCGGAAGTACCACTGCGAGATCT
GTGACCAGTGGTTCCTGCGCTCATCCCATTTGACCCTACATCAAAGCACT
AAATTACACCAGCGAAGAGCTGAAAGTGCTAGGATTGTCTAGAAGCTTTC
TAGACCAT

BS04490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1026 CG31441-PA 1..1026 17..1042 5130 100 Plus
CG31441-RB 147 CG31441-PB 1..132 17..148 660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1219 CG31441-RA 72..1099 17..1044 5140 100 Plus
CG31441-RB 1223 CG31441-RB 72..1103 17..1044 5065 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236550..11237340 149..939 3955 100 Plus
3R 32079331 3R 11236357..11236488 17..148 660 100 Plus
3R 32079331 3R 11237400..11237504 940..1044 525 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:43:10 has no hits.

BS04490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:00 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:21 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1097 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:37 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1097 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:00 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..1101 12..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:23 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1097 17..1042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:23 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11236550..11237340 149..939 100 -> Plus
3R 11237400..11237502 940..1042 100   Plus
3R 11236357..11236488 17..148 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:37 Download gff for BS04490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062079..7062210 17..148 100 -> Plus
arm_3R 7062272..7063062 149..939 100 -> Plus
arm_3R 7063122..7063224 940..1042 100   Plus

BS04490.pep Sequence

Translation from 16 to 1041

> BS04490.pep
MSELRSICRTCGKNVTNLQGRATKLFNKSNYHFISILENITDMYLEFDTT
LPHLICQCCKVQLDRILTFRNKCLEVHKSFMAANRKLLRKKAIVDEELDK
PDVEKLQQDLWDHTDQEMCVAMADTAGLLREDHNDNEKAKDAEDATQNEK
NQEEQVQVQTEEVEHCQEQLHNMSIISKGVSARVPKRTKRNSKSWFCDQC
GGVFKSSTYLKLHLQRHSGHKPFACDICQAKYYTDNEMRRHRILHTDARP
YACRFCSKTYRGCSSKVVHERTHTNERPFQCQHCDKAFTSTSTRQKHEML
HTNQRKYHCEICDQWFLRSSHLTLHQSTKLHQRRAESARIV*

BS04490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 341 CG31441-PA 1..341 1..341 1851 100 Plus
M1BP-PA 418 CG9797-PA 6..396 1..340 488 28.5 Plus
CG18764-PA 409 CG18764-PA 5..401 8..337 485 29.3 Plus
ranshi-PA 346 CG9793-PA 5..339 7..338 479 30.1 Plus
CG8159-PB 399 CG8159-PB 2..335 4..338 444 28.5 Plus