Clone Sequence Records
BS04490.3prime Sequence
802 bp (779 high quality bases) assembled on 2005-12-01
> BS04490.3prime
ATGGTCTAGAAAGCTTCTAGACAATCCTAGCACTTTCAGCTCTTCGCTGG
TGTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCA
CTGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCT
CATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGG
CACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACT
GCTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGG
CGTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTAC
TTGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTG
CAGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGT
CACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCA
CTTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTG
CTCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCAT
TCTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCT
TCCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATC
CGTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGA
GTTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCC
AT
BS04490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 241..1026 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RB | 1223 | CG31441-RB | 316..1103 | 802..15 | 3940 | 100 | Minus |
CG31441-RA | 1219 | CG31441-RA | 312..1099 | 802..15 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236658..11237340 | 802..120 | 3415 | 100 | Minus |
3R | 32079331 | 3R | 11237400..11237504 | 119..15 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:53:19 has no hits.
BS04490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:59 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 241..1026 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:54 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 241..1026 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:14 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 312..1101 | 11..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:01 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 312..1101 | 11..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:01 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236658..11237340 | 120..802 | 100 | -> | Minus |
3R | 11237400..11237498 | 21..119 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:14 Download gff for
BS04490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062380..7063062 | 120..802 | 100 | -> | Minus |
arm_3R | 7063122..7063220 | 21..119 | 100 | <- | Minus |
BS04490.5prime Sequence
891 bp (783 high quality bases) assembled on 2005-12-01
> BS04490.5prime
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCCCGTC
BS04490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1219 | CG31441-RA | 72..946 | 17..891 | 4360 | 99.9 | Plus |
CG31441-RB | 1223 | CG31441-RB | 72..950 | 17..891 | 4310 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236550..11237292 | 149..891 | 3700 | 99.9 | Plus |
3R | 32079331 | 3R | 11236357..11236488 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:26:16 has no hits.
BS04490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:00 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:55 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:18:25 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..946 | 12..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:01 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..946 | 12..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:01 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236352..11236488 | 12..148 | 98 | -> | Plus |
3R | 11236550..11237292 | 149..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:18:25 Download gff for
BS04490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062074..7062210 | 12..148 | 98 | -> | Plus |
arm_3R | 7062272..7063014 | 149..891 | 99 | | Plus |
BS04490.complete Sequence
1058 bp (1058 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634961
> BS04490.complete
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCA
AAAACATGAGATGCTGCACACTAATCAGCGGAAGTACCACTGCGAGATCT
GTGACCAGTGGTTCCTGCGCTCATCCCATTTGACCCTACATCAAAGCACT
AAATTACACCAGCGAAGAGCTGAAAGTGCTAGGATTGTCTAGAAGCTTTC
TAGACCAT
BS04490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1026 | CG31441-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG31441-RB | 147 | CG31441-PB | 1..132 | 17..148 | 660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1219 | CG31441-RA | 72..1099 | 17..1044 | 5140 | 100 | Plus |
CG31441-RB | 1223 | CG31441-RB | 72..1103 | 17..1044 | 5065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236550..11237340 | 149..939 | 3955 | 100 | Plus |
3R | 32079331 | 3R | 11236357..11236488 | 17..148 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11237400..11237504 | 940..1044 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:43:10 has no hits.
BS04490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:00 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:21 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1097 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:37 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1097 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:00 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..1101 | 12..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:23 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1097 | 17..1042 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:23 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236550..11237340 | 149..939 | 100 | -> | Plus |
3R | 11237400..11237502 | 940..1042 | 100 | | Plus |
3R | 11236357..11236488 | 17..148 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:37 Download gff for
BS04490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062079..7062210 | 17..148 | 100 | -> | Plus |
arm_3R | 7062272..7063062 | 149..939 | 100 | -> | Plus |
arm_3R | 7063122..7063224 | 940..1042 | 100 | | Plus |
BS04490.pep Sequence
Translation from 16 to 1041
> BS04490.pep
MSELRSICRTCGKNVTNLQGRATKLFNKSNYHFISILENITDMYLEFDTT
LPHLICQCCKVQLDRILTFRNKCLEVHKSFMAANRKLLRKKAIVDEELDK
PDVEKLQQDLWDHTDQEMCVAMADTAGLLREDHNDNEKAKDAEDATQNEK
NQEEQVQVQTEEVEHCQEQLHNMSIISKGVSARVPKRTKRNSKSWFCDQC
GGVFKSSTYLKLHLQRHSGHKPFACDICQAKYYTDNEMRRHRILHTDARP
YACRFCSKTYRGCSSKVVHERTHTNERPFQCQHCDKAFTSTSTRQKHEML
HTNQRKYHCEICDQWFLRSSHLTLHQSTKLHQRRAESARIV*
BS04490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 341 | CG31441-PA | 1..341 | 1..341 | 1851 | 100 | Plus |
M1BP-PA | 418 | CG9797-PA | 6..396 | 1..340 | 488 | 28.5 | Plus |
CG18764-PA | 409 | CG18764-PA | 5..401 | 8..337 | 485 | 29.3 | Plus |
ranshi-PA | 346 | CG9793-PA | 5..339 | 7..338 | 479 | 30.1 | Plus |
CG8159-PB | 399 | CG8159-PB | 2..335 | 4..338 | 444 | 28.5 | Plus |