Clone Sequence Records
BS04494.3prime Sequence
918 bp (907 high quality bases) assembled on 2005-12-01
> BS04494.3prime
ATGGTCTAGAAAGCTTTCAATCATGCAATCCGTTGCGTCCACGCTTGTGT
GGTGAACAGAAGGTGTTTGCTATGTTGCTGCTTCCAATAGTTGATTTTTC
TGGTCCACGTTTTAGATTTGGCGTAACTGTGGGTGTGTGCTGTTTCGCTG
CCGCGGGATCCTGCAGCCATCTAACTTGGGTGGCAGGTCCATAGCCCTTT
TGATTGCGAGCAGCGATTCGGAATATAATTGCTGGTTTATTTGAGCAATC
CACATGTGCATTAGATAGTGAAGCATTCGGCACTGTGCATTGATTTGCCG
CACCTACATAAACCCGCACAAAAGCTAATTGTGGAGTGGACAACGCCTTA
TCCTTGGCAGTAGGCTTAACTGCAAGGTATACTGAATATTCAATTATCTC
CTTAGTTTTTTGAGCTGGTGGTGGTTCCCATGTTAAGTGAGCGCCCTCCT
TGACATCCTTGGAAATTTTAATAGCTGAGGGGGCACCCGGAAAGCCTGGT
AAACAGGTTTTAAAACTTGATATCTCTCCCCATTCTCCTCGTCCGCAAGA
ATTGATAGCACTCAGTCGAAAACGGTAAGCCGTTCCAGGCTCCAAATTGG
TGCGTGGAAACTTGCTGAAATCTGGAAGATTATCCACATCTATACCGTCA
AAAAAAGAATCACTAATACAATTCGAATCAATGTAGCTAGTCACTGTGTG
AGAAAGATCCTTAAACACACCTACTGTGTGCCATTTTTGGTTCTCGTTTT
GGGAGGTGTTTGGAACCACGACCGCTAAGGTGGATTGAACATTATTTTGT
TGAATCTCAGCAATGTTGCTACTTCTGGTATTTGTTTCACTTTTCGGTCG
CTCTATCAATTCTTTCAACGCCAATGCTGTGGTGTCTGATGTTGCAGCTT
GCAGTAACGCAGCAGAAG
BS04494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1710-PC | 4503 | Hcf-RC | 3602..4503 | 918..17 | 4485 | 99.8 | Minus |
| CG1710-PB | 4503 | Hcf-RB | 3602..4503 | 918..17 | 4485 | 99.8 | Minus |
| CG1710-PA | 4503 | Hcf-RA | 3602..4503 | 918..17 | 4485 | 99.8 | Minus |
| CG1710-PD | 4503 | Hcf-RD | 3602..4503 | 918..17 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 7812 | CG1710-RG | 3749..4650 | 918..17 | 4495 | 99.9 | Minus |
| Hcf-RF | 5190 | CG1710-RF | 3897..4798 | 918..17 | 4495 | 99.9 | Minus |
| Hcf-RE | 5372 | CG1710-RE | 4079..4980 | 918..17 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 371811..372176 | 525..160 | 1830 | 100 | Minus |
| 4 | 1348131 | 4 | 371091..371357 | 790..524 | 1335 | 100 | Minus |
| 4 | 1348131 | 4 | 372249..372392 | 160..17 | 720 | 100 | Minus |
| 4 | 1348131 | 4 | 369837..369966 | 918..789 | 635 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-10 22:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 1217..1266 | 905..856 | 115 | 70 | Minus |
BS04494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:03 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-PA | 3602..4503 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:00 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1710-PD | 3602..4503 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:32:31 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 4053..4954 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:37 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RE | 4079..4980 | 17..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:37 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 369837..369964 | 791..918 | 99 | -> | Minus |
| 4 | 371091..371357 | 524..790 | 100 | -> | Minus |
| 4 | 371813..372176 | 160..523 | 100 | -> | Minus |
| 4 | 372250..372392 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:32:31 Download gff for
BS04494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 390463..390590 | 791..918 | 99 | -> | Minus |
| arm_4 | 391717..391983 | 524..790 | 100 | -> | Minus |
| arm_4 | 392439..392802 | 160..523 | 100 | -> | Minus |
| arm_4 | 392876..393018 | 17..159 | 100 | | Minus |
BS04494.5prime Sequence
846 bp (786 high quality bases) assembled on 2005-12-01
> BS04494.5prime
GAAGTTATCAGTCGACATGGAAGGCTCAGACTTTGTGGATCCAGCCTTTT
CTTCAGGAGAACGAATATCGGCATCTGATCTCAATTCGGAGCATATTATT
CAGGCCGAGAATCACAGTTTTGCTAATCGAATTTCTATGGATATGGATGT
CCCTGATGGGCACCAGCTGGACAGCAACTTAACCGGATTTCGATGGAAGC
GAGTTCTTAACCCAACCGGACCGCAGCCCCGCCCGAGACATGGACACCGT
GCGATAAACATCAAAGAGCTAATGGTCGTCTTCGGCGGCGGAAACGAAGG
AATTGTTGACGAGTTGCACGTTTATAATACTGTTACTAATCAGTGGTACG
TCCCAGTGCTAAAAGGTGATGTACCGAACGGATGCGCTGCTTATGGATTT
GTTGTGGAGGGTACTCGCATGTTTGTTTTTGGGGGAATGATCGAATACGG
AAAATATTCAAACGAGCTCTATGAGCTACAGGCAACTAAATGGGAATGGA
GAAAAATGTATCCAGAGTCACCAGACAGTGGGTTGTCACCGTGTCCTCGC
TTGGGTCACAGCTTTACAATGGTTGGTGAAAAAATATTTCTTTTCGGCGG
ACTAGCAAATGAATCGGACGACCCAAAAAATAATATTCCAAAATACTTAA
ACGACTTGTACATACTGGATACTCGAGGAGTTCACAGTCATAACGGAAAG
TGGATAGTACCTAAAACATATGGGGATAGCCCGCCACCACGAGAGTCGCA
CACAGGCATATCGTTTGCTACTAAAAGCAACGGAAATTTAAATCTTTTGA
TTTATGGTGGAATGAGCGGCTGCCGCTTGGGAGATTTATGGTTGCT
BS04494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1710-PC | 4503 | Hcf-RC | 1..830 | 17..846 | 4150 | 100 | Plus |
| CG1710-PB | 4503 | Hcf-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
| CG1710-PA | 4503 | Hcf-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
| CG1710-PD | 4503 | Hcf-RD | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 7812 | CG1710-RG | 148..977 | 17..846 | 4150 | 100 | Plus |
| Hcf-RF | 5190 | CG1710-RF | 452..1281 | 17..846 | 4150 | 100 | Plus |
| Hcf-RE | 5372 | CG1710-RE | 526..1355 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 360691..361006 | 17..332 | 1580 | 100 | Plus |
| 4 | 1348131 | 4 | 362303..362613 | 332..642 | 1555 | 100 | Plus |
| 4 | 1348131 | 4 | 362671..362874 | 643..846 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:52:17 has no hits.
BS04494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:04 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:01 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1710-PD | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:42:36 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 446..1281 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:50 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RE | 520..1355 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:50 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 360685..361006 | 9..332 | 98 | -> | Plus |
| 4 | 362304..362613 | 333..642 | 100 | -> | Plus |
| 4 | 362671..362874 | 643..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:42:36 Download gff for
BS04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 381311..381632 | 9..332 | 98 | -> | Plus |
| arm_4 | 382930..383239 | 333..642 | 100 | -> | Plus |
| arm_4 | 383297..383500 | 643..846 | 100 | | Plus |
BS04494.complete Sequence
4535 bp assembled on 2010-08-12
GenBank Submission: KX798632
> BS04494.complete
GAAGTTATCAGTCGACATGGAAGGCTCAGACTTTGTGGATCCAGCCTTTT
CTTCAGGAGAACGAATATCGGCATCTGATCTCAATTCGGAGCATATTATT
CAGGCCGAGAATCACAGTTTTGCTAATCGAATTTCTATGGATATGGATGT
CCCTGATGGGCACCAGCTGGACAGCAACTTAACCGGATTTCGATGGAAGC
GAGTTCTTAACCCAACCGGACCGCAGCCCCGCCCGAGACATGGACACCGT
GCGATAAACATCAAAGAGCTAATGGTCGTCTTCGGCGGCGGAAACGAAGG
AATTGTTGACGAGTTGCACGTTTATAATACTGTTACTAATCAGTGGTACG
TCCCAGTGCTAAAAGGTGATGTACCGAACGGATGCGCTGCTTATGGATTT
GTTGTGGAGGGTACTCGCATGTTTGTTTTTGGGGGAATGATCGAATACGG
AAAATATTCAAACGAGCTCTATGAGCTACAGGCAACTAAATGGGAATGGA
GAAAAATGTATCCAGAGTCACCAGACAGTGGGTTGTCACCGTGTCCTCGC
TTGGGTCACAGCTTTACAATGGTTGGTGAAAAAATATTTCTTTTCGGCGG
ACTAGCAAATGAATCGGACGACCCAAAAAATAATATTCCAAAATACTTAA
ACGACTTGTACATACTGGATACTCGAGGAGTTCACAGTCATAACGGAAAG
TGGATAGTACCTAAAACATATGGGGATAGCCCGCCACCACGAGAGTCGCA
CACAGGCATATCGTTTGCTACTAAAAGCAACGGAAATTTAAATCTTTTGA
TTTATGGTGGAATGAGCGGCTGCCGCTTGGGAGATTTATGGTTGCTAGAA
ACAGACTCCATGACTTGGTCGAAGCCGAAAACTTCAGGGGAGGCGCCGCT
ACCACGCTCGTTGCACAGTTCTACAATGATTGGCAACAAAATGTATGTCT
TTGGTGGCTGGGTTCCCTTAGTGATCAATGATTCTAAATCGACAACAGAG
CGTGAATGGAAATGTACAAACACTCTTGCTGTCCTTGACCTTGAAACAAT
GACATGGGAAAATGTCACATTGGACACTGTAGAGGAAAATGTTCCACGTG
CCCGTGCTGGCCACTGTGCAGTTGGTATTCAAAGTCGTCTTTATGTGTGG
TCAGGTCGTGATGGTTACCGCAAAGCATGGAACAACCAGGTTTGCTGCAA
AGACCTGTGGTACTTAGAGGTCTCCAAGCCCCTGTATGCAGTAAAAGTTG
CGCTAGTTCGCGCTTCTACTCACGCCTTGGAGCTCTCGTGGACTGCGACC
ACTTTTGCAGCAGCCTACGTTTTGCAAATCCAAAAAATTGAGCAGCCATT
AAATACAAGCTCGAAACTGTTAAGCAACAACATTGTTCAACAAGGAACCC
CGACATCTGCTGAAACTTCTGGAATTAATATTTCAGCAAATAGATCTGGG
AGTGCTTTGGGTCTTGGTGTCGAAGCCACATCTACAGTCTTAAAACTAGA
AAAGGAATCTTTGCAACTGAGTGGATGTCAACCGGAAACAAATGTTCAAC
CATCTGTAAATGACTTGTTGCAATCAATGTCGCAACCTTCTTCCCCAGCG
TCCCGTGCTGATAAAGACCCACTTTCGTCAGGGGGTGGAACTACCTTTAA
CTTATCAACATCGGTCGCTTCAGTGCATCCTCAAATATCTGTAATCAGTA
GTACAGCCGCAGTAACGGGCAACGACACAGCGTCCCCAAGTGGCGCCATT
AATAGTATATTGCAAAAGTTTCGACCAGTTGTTACCGCTGTAAGAACGTC
CACAACTACTGCGGTATCTATTGCTACCAGCACGTCTGATCCCTTGTCTG
TGCGAGTACCAAGTACGATGTCGGCAAACGTTGTTCTCAGCTCTTCAAGT
AGTACATTGCGTATTGTCCCAAGCGTAACTGCATCGCATTCACTACGTAT
AGCTTCTTCTCAAGCAAGTGGCAACAACTGCCGGAGTAGCTCTGCAATAA
ATATATTAAAAACAGCTCTTCCAAACGTCGCCGTGCAATCTCAGCCTACA
TCATCGACCACCACCTCCATTGGTGGAAAACAGTACTTCATTCAAAAGCC
ACTTACACTTGCTCCAAATGTTCAGCTCCAATTTGTTAAGACCAGTGGTG
GGATGACTGTTCAAACTCTTCCAAAAGTAAACTTTACGGCTTCAAAAGGA
ACGCCCCCACATGGCATATCAATTGCAAACCCACATTTGGCGTCTGGTAT
TACTCAAATTCAGGGATCGACAGTGCCTGGAAGTCAGATTCAAAAGCCCA
TTGTGTCCGGAAACGTTTTAAAGCTTGTATCGCCGCATACGATGGCCGGT
GGAAAATTGATTATGAAGAATTCAAACATCTTACAGATGGGCAAGGTAAC
TCCGAACGTAATGGGTGGAAAACCAGCTTTTGTCATAACTAATAAACAGG
GTACGCCATTGGGAAATCAGCAGATTATTATTGTAACCACTGGTGGCAAT
GTGCGATCTGTTCCAACTAGCACAGTTATGACAAGTGCTGGTGGCTCTGC
ATCAGGGACAAATATTGTAAGTATAGTTAACTCAACGTCGACCACGCCTA
GCCCGCTGCAGGCATTAAGTGGACAAAAAACTTTAATATCCAACCAAAGT
GGAGTTAAGATGCTGCGAAATATATCATCAGTACAAGCATCATCTTCAAT
GGCATTTGGGCAAAAACAAAGTGGCACTCCCATTCATCAAAAAACGGCAT
TGTATATAGGAGGCAAAGCTGTTACCGTTATGAGCACCAATACAAGTATG
GCTGCATCCGGAAATAAAGTTATGGTACTACCAGGAACAAGCTCAAATAA
TTCTCCTGCTACTACAACGGCGCTGAGTGCCAGAAAAAGTTTTGTTTTCA
ATGCCGGAGGTAGCCCTCGGACCGTCACTTTAGCAACTAAAAGCATTAAT
GCAAAATCTATACCACAATCGCAACCAGTGACGGAAACTAATAACCATTC
AGTCGCTACTATTAAAGACACAGATCCAATGGATGATATTATAGAGCAGT
TGGATGGAGCCGGAGATCTGCTAAAGCTTTCTGAAAGTGAAGGCCAGCAT
GGATCGGAGGAGAATGAAAATAATGGTGAAAACGCAACGTCTTCATCTGC
CTCTGCCCTGTTTACCGGAGGTGATACGGCCGGGCCATCGAGAGCCCAAA
ACCCTATAGTAATGGAACATCCGGTTGATATTATAGAAGATGTCTCTGGC
GTGAGCAGCACAACTGACGTTAACGAAACTGCAATCGTAAGTGGTGATAC
AATAGAATCGCTTAAGATGTCGGAGAAGGAAAACGATGATGTGAAATCTA
TGGGTGAAAAATCAATATTATCCGATGATTGTCATCAGCCGACGACTTCC
GAGACGGAAGCGGCCACCATCCTAACCACAATTAAGTCTGCAGAGGCTTT
AGTGTTGGAAACTGCAGAAATAAGGAAAGATCATACCGGATGTACTATAG
GTAGTTTGAAAGAAAATCAAGATGAAAATAAAAAGTTTAAACAACGGCAA
GAATCTTCACCGTCTCAAAACATTCACCAATTCCAAAATGTGGATGGTTC
ACAATTAGAGGCTCTTGCTTCTGCTGCGTTACTGCAAGCTGCAACATCAG
ACACCACAGCATTGGCGTTGAAAGAATTGATAGAGCGACCGGAAAGTGAA
ACAAATACCAGAAGTAGCAACATTGCTGAGATTCAACAAAATAATGTTCA
ATCCACCTTAGCGGTCGTGGTTCCAAACACCTCCCAAAACGAGAACCAAA
AATGGCACACAGTAGGTGTGTTTAAGGATCTTTCTCACACAGTGACTAGC
TACATTGATTCGAATTGTATTAGTGATTCTTTTTTTGACGGTATAGATGT
GGATAATCTTCCAGATTTCAGCAAGTTTCCACGCACCAATTTGGAGCCTG
GAACGGCTTACCGTTTTCGACTGAGTGCTATCAATTCTTGCGGACGAGGA
GAATGGGGAGAGATATCAAGTTTTAAAACCTGTTTACCAGGCTTTCCGGG
TGCCCCCTCAGCTATTAAAATTTCCAAGGATGTCAAGGAGGGCGCTCACT
TAACATGGGAACCACCACCAGCTCAAAAAACTAAGGAGATAATTGAATAT
TCAGTATACCTTGCAGTTAAGCCTACTGCCAAGGATAAGGCGTTGTCCAC
TCCACAATTAGCTTTTGTGCGGGTTTATGTAGGTGCGGCAAATCAATGCA
CAGTGCCGAATGCTTCACTATCTAATGCACATGTGGATTGCTCAAATAAA
CCAGCAATTATATTCCGAATCGCTGCTCGCAATCAAAAGGGCTATGGACC
TGCCACCCAAGTTAGATGGCTGCAGGATCCCGCGGCAGCGAAACAGCACA
CACCCACAGTTACGCCAAATCTAAAACGTGGACCAGAAAAATCAACTATT
GGAAGCAGCAACATAGCAAACACCTTCTGTTCACCACACAAGCGTGGACG
CAACGGATTGCATGATTGAAAGCTTTCTAGACCAT
BS04494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 4503 | CG1710-PG | 1..4503 | 17..4519 | 22515 | 100 | Plus |
| Hcf-RA | 4503 | CG1710-PA | 1..4503 | 17..4519 | 22515 | 100 | Plus |
| Hcf-RB | 4503 | CG1710-PB | 1..4503 | 17..4519 | 22515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 7812 | CG1710-RG | 148..4650 | 17..4519 | 22515 | 100 | Plus |
| Hcf-RA | 5346 | CG1710-RA | 452..4954 | 17..4519 | 22515 | 100 | Plus |
| Hcf-RB | 7231 | CG1710-RB | 148..4650 | 17..4519 | 22515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 365671..366763 | 2261..3353 | 5465 | 100 | Plus |
| 4 | 1348131 | 4 | 363865..364942 | 1187..2264 | 5390 | 100 | Plus |
| 4 | 1348131 | 4 | 371811..372176 | 4011..4376 | 1830 | 100 | Plus |
| 4 | 1348131 | 4 | 360691..361006 | 17..332 | 1580 | 100 | Plus |
| 4 | 1348131 | 4 | 362303..362613 | 332..642 | 1555 | 100 | Plus |
| 4 | 1348131 | 4 | 371091..371357 | 3746..4012 | 1335 | 100 | Plus |
| 4 | 1348131 | 4 | 369506..369744 | 3352..3590 | 1195 | 100 | Plus |
| 4 | 1348131 | 4 | 362671..362882 | 643..854 | 1060 | 100 | Plus |
| 4 | 1348131 | 4 | 362944..363134 | 853..1043 | 955 | 100 | Plus |
| 4 | 1348131 | 4 | 369809..369966 | 3590..3747 | 790 | 100 | Plus |
| 4 | 1348131 | 4 | 363493..363642 | 1043..1192 | 750 | 100 | Plus |
| 4 | 1348131 | 4 | 372249..372392 | 4376..4519 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:27 has no hits.
BS04494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-12 09:31:59 Download gff for
BS04494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 413..4914 | 17..4518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:51 Download gff for
BS04494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RB | 148..4649 | 17..4518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:09 Download gff for
BS04494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RB | 148..4649 | 17..4518 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:09 Download gff for
BS04494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 371091..371357 | 3746..4012 | 100 | -> | Plus |
| 4 | 362671..362882 | 643..854 | 100 | -> | Plus |
| 4 | 360691..361006 | 17..332 | 100 | -> | Plus |
| 4 | 362304..362613 | 333..642 | 100 | -> | Plus |
| 4 | 362946..363134 | 855..1043 | 100 | -> | Plus |
| 4 | 363494..363639 | 1044..1189 | 100 | -> | Plus |
| 4 | 363868..364941 | 1190..2263 | 100 | -> | Plus |
| 4 | 365674..366762 | 2264..3352 | 100 | -> | Plus |
| 4 | 369507..369744 | 3353..3590 | 100 | -> | Plus |
| 4 | 369810..369964 | 3591..3745 | 100 | -> | Plus |
| 4 | 371813..372176 | 4013..4376 | 100 | -> | Plus |
| 4 | 372250..372391 | 4377..4518 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:51 Download gff for
BS04494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 381317..381632 | 17..332 | 100 | -> | Plus |
| arm_4 | 382930..383239 | 333..642 | 100 | -> | Plus |
| arm_4 | 383297..383508 | 643..854 | 100 | -> | Plus |
| arm_4 | 383572..383760 | 855..1043 | 100 | -> | Plus |
| arm_4 | 384120..384265 | 1044..1189 | 100 | -> | Plus |
| arm_4 | 384494..385567 | 1190..2263 | 100 | -> | Plus |
| arm_4 | 386300..387388 | 2264..3352 | 100 | -> | Plus |
| arm_4 | 390133..390370 | 3353..3590 | 100 | -> | Plus |
| arm_4 | 390436..390590 | 3591..3745 | 100 | -> | Plus |
| arm_4 | 391717..391983 | 3746..4012 | 100 | -> | Plus |
| arm_4 | 392439..392802 | 4013..4376 | 100 | -> | Plus |
| arm_4 | 392876..393017 | 4377..4518 | 100 | | Plus |
BS04494.pep Sequence
Translation from 16 to 4518
> BS04494.pep
MEGSDFVDPAFSSGERISASDLNSEHIIQAENHSFANRISMDMDVPDGHQ
LDSNLTGFRWKRVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIVDEL
HVYNTVTNQWYVPVLKGDVPNGCAAYGFVVEGTRMFVFGGMIEYGKYSNE
LYELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFGGLANES
DDPKNNIPKYLNDLYILDTRGVHSHNGKWIVPKTYGDSPPPRESHTGISF
ATKSNGNLNLLIYGGMSGCRLGDLWLLETDSMTWSKPKTSGEAPLPRSLH
SSTMIGNKMYVFGGWVPLVINDSKSTTEREWKCTNTLAVLDLETMTWENV
TLDTVEENVPRARAGHCAVGIQSRLYVWSGRDGYRKAWNNQVCCKDLWYL
EVSKPLYAVKVALVRASTHALELSWTATTFAAAYVLQIQKIEQPLNTSSK
LLSNNIVQQGTPTSAETSGINISANRSGSALGLGVEATSTVLKLEKESLQ
LSGCQPETNVQPSVNDLLQSMSQPSSPASRADKDPLSSGGGTTFNLSTSV
ASVHPQISVISSTAAVTGNDTASPSGAINSILQKFRPVVTAVRTSTTTAV
SIATSTSDPLSVRVPSTMSANVVLSSSSSTLRIVPSVTASHSLRIASSQA
SGNNCRSSSAINILKTALPNVAVQSQPTSSTTTSIGGKQYFIQKPLTLAP
NVQLQFVKTSGGMTVQTLPKVNFTASKGTPPHGISIANPHLASGITQIQG
STVPGSQIQKPIVSGNVLKLVSPHTMAGGKLIMKNSNILQMGKVTPNVMG
GKPAFVITNKQGTPLGNQQIIIVTTGGNVRSVPTSTVMTSAGGSASGTNI
VSIVNSTSTTPSPLQALSGQKTLISNQSGVKMLRNISSVQASSSMAFGQK
QSGTPIHQKTALYIGGKAVTVMSTNTSMAASGNKVMVLPGTSSNNSPATT
TALSARKSFVFNAGGSPRTVTLATKSINAKSIPQSQPVTETNNHSVATIK
DTDPMDDIIEQLDGAGDLLKLSESEGQHGSEENENNGENATSSSASALFT
GGDTAGPSRAQNPIVMEHPVDIIEDVSGVSSTTDVNETAIVSGDTIESLK
MSEKENDDVKSMGEKSILSDDCHQPTTSETEAATILTTIKSAEALVLETA
EIRKDHTGCTIGSLKENQDENKKFKQRQESSPSQNIHQFQNVDGSQLEAL
ASAALLQAATSDTTALALKELIERPESETNTRSSNIAEIQQNNVQSTLAV
VVPNTSQNENQKWHTVGVFKDLSHTVTSYIDSNCISDSFFDGIDVDNLPD
FSKFPRTNLEPGTAYRFRLSAINSCGRGEWGEISSFKTCLPGFPGAPSAI
KISKDVKEGAHLTWEPPPAQKTKEIIEYSVYLAVKPTAKDKALSTPQLAF
VRVYVGAANQCTVPNASLSNAHVDCSNKPAIIFRIAARNQKGYGPATQVR
WLQDPAAAKQHTPTVTPNLKRGPEKSTIGSSNIANTFCSPHKRGRNGLHD
*
BS04494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-PG | 1500 | CG1710-PG | 1..1500 | 1..1500 | 7709 | 100 | Plus |
| Hcf-PA | 1500 | CG1710-PA | 1..1500 | 1..1500 | 7709 | 100 | Plus |
| Hcf-PB | 1500 | CG1710-PB | 1..1500 | 1..1500 | 7709 | 100 | Plus |
| Hcf-PE | 1484 | CG1710-PE | 1..1484 | 1..1500 | 7573 | 98.7 | Plus |
| Hcf-PF | 1448 | CG1710-PF | 1..1448 | 1..1500 | 7379 | 96.5 | Plus |
