Clone BS04495 Report

Search the DGRC for BS04495

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptinv-RB
Protein status:BS04495.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04495.3prime Sequence

885 bp (816 high quality bases) assembled on 2005-12-01

> BS04495.3prime
ATGGTCTAGAAAGCTTCTAGCAGGGCTCCTTGGCGGCAGCGGCACTAGCC
GCCTCCTGCAGCTCCTGCAGCTCCTCCTCCTCGCGGGTCAGCGGTATCGT
CGAGTGGTTGTACAATCCCTGCGCCATCAGCTGCAGCGCCAGCGGATTCT
TGGTGCCGCTCGACTTTTTCAGCTTGGCCCGTTTGTTCTGGAACCAGATC
TTGATCTGCGCCTCGTTCAGTCCCAGTTCCCCGCTCAGCTGCTGGCGTCG
CTTCTCCGTCAGATAGCGATTCTCGTTGAACTCGTGCTTCAGTCTGGCCA
ACTGCGTTCCGCTGAAGGCCGTTCGCGGCCTTTTGTCCTCCGGCACCCCG
CCCCCATCGGCGGCCTCCCCCTTCTCGACGCCCCCACCCCCACCACCTGC
CGCCGAACTGGACGTCGCCGGCTTCTTGGGCTTTCGCGCTCGTGGACTTC
GACCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTAGACCCACGCTGGC
CAAACGATGGGAGTGCCGGAATCCTCGCCCGATTTACCGGATGCTCCTGT
GGCACCCGCTCCTGCCGCTGGCGGTGGCGACTTGACCAGATCCACTGGTG
CCCCCGAGGTGTTCGTCGTGCTGCTGCTGGTGGCGGTGCTATTGGAATCG
TTGCTGTTGCTGCATATATTCGCCAGCGAGCTGGAGAAGCTCAAGCTCGA
GTTGGCGGCGGCGTTACTTTGAGCCAGATTCAGTGGCTTTCCCGACTTCT
TGGGCGCCTTTAGGGGAGATCTGTTGCCATTGGTATTTCCAGAATTTTTA
CTGCTGCCAGTACTGCTCCCACTTACACTGCCACCACCGATATTGCCACT
TAAAGCACCAATCTTGGGCAATCTGGAAACAAAGT

BS04495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17835-PD 1731 inv-RD 863..1731 885..17 4320 99.8 Minus
CG17835-PC 1731 inv-RC 863..1731 885..17 4320 99.8 Minus
CG17835-PA 1731 inv-RA 863..1731 885..17 4320 99.8 Minus
CG17835-PB 1731 inv-RB 863..1731 885..17 4320 99.8 Minus
CG9015-PB 1659 en-RB 1477..1524 220..173 215 97.9 Minus
CG9015-PA 1659 en-RA 1477..1524 220..173 215 97.9 Minus
CG9015-PB 1659 en-RB 1273..1313 493..453 180 97.5 Minus
CG9015-PA 1659 en-RA 1273..1313 493..453 180 97.5 Minus
CG9015-PB 1659 en-RB 1549..1593 148..104 175 95.5 Minus
CG9015-PA 1659 en-RA 1549..1593 148..104 175 95.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
inv-RE 4776 CG17835-RE 1131..2002 885..14 4345 99.9 Minus
inv-RB 2261 CG17835-RB 1131..2002 885..14 4345 99.9 Minus
inv-RD 3404 CG17835-RD 2274..3145 885..14 4345 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11476838..11477271 885..452 2155 99.8 Minus
2R 25286936 2R 11506647..11506921 288..14 1375 100 Minus
2R 25286936 2R 11506069..11506229 447..287 805 100 Minus
2R 25286936 2R 11524630..11524844 69..283 670 87.4 Plus
2R 25286936 2R 11526357..11526407 452..502 210 94.1 Plus
Blast to na_te.dros performed 2015-02-10 22:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6955 663..526 159 59.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6883 663..538 147 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6900 663..542 146 59 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6694..6847 690..538 145 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..3013 819..594 141 56 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6655..6867 748..535 138 56 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2430 662..608 131 70.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2483 662..562 129 63.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2902 663..542 129 62.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2382 663..608 127 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2438 663..529 124 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1578 662..608 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6881..6935 662..608 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2655 662..608 113 67.3 Minus
roo 9092 roo DM_ROO 9092bp 1092..1151 667..608 111 65 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2415 663..608 109 66.1 Minus

BS04495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:05 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17835-PA 863..1731 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:02 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17835-PB 863..1731 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:26:55 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
inv-RD 2274..3145 14..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:01 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
inv-RD 2274..3145 14..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:01 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11476838..11477273 448..885 99 -> Minus
2R 11506069..11506229 287..447 100 -> Minus
2R 11506649..11506921 14..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:26:55 Download gff for BS04495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7364343..7364778 448..885 99 -> Minus
arm_2R 7393574..7393734 287..447 100 -> Minus
arm_2R 7394154..7394426 14..286 100   Minus

BS04495.5prime Sequence

778 bp (729 high quality bases) assembled on 2005-12-01

> BS04495.5prime
GAAGTTATCAGTCGACATGTCCACCTTGGCCAGCACTCGACCGCCCCCGC
TCAAGCTGACTATTCCTTCCTTAGAGGAGGCAGAGGACCACGCGCAGGAG
AGGAGAGCGGGCGGAGGTGGCCAGGAAGTAGGTAAAATGCATCCGGATTG
CTTGCCCTTGCCGCTTGTCCAGCCGGGCAACTCGCCCCAAGTGCGGGAGG
AGGAGGAGGACGAGCAGACGGAGTGCGAGGAGCAGCTGAACATAGAGGAT
GAAGAGGTCGAGGAGGAGCACGATTTGGACCTGGAGGATCCGGCCAGCTG
CTGCAGTGAGAATAGTGTCTTGAGTGTGGGCCAGGAACAATCGGAAGCAG
CACAGGCTGCGCTATCCGCTCAAGCTCAGGCCAGGCAGAGGCTTTTGATC
AGCCAAATCTATCGACCGTCGGCATTCAGCAGCACTGCTACCACTGTTTT
GCCGCCCAGCGAAGGTCCGCCCTTCTCACCCGAAGATCTCCTGCAACTGC
CTCCCTCCACTGGAACCTTCCAGGAGGAGTTCCTGCGAAAGTCCCAGCTG
TACGCCGAGGAGCTGATGAAACAGCAGATGCATCTAATGGCCGCCGCCAG
GGTGAACGCTCTCACGGCAGCGGCGGCGGGAAAACAGCTGCAAATGGCAA
TGGCGGCGGCGGCGGTTGCCACAGTGCCCAGCGGTCAGGATGCACTGGCT
CAGCTGACGGCCACGGCATTGGGTCTGGGACCCGGTGGAGCGGTGCATCC
CCATCAGCAATTGCTACTGCAAAGGGAT

BS04495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17835-PD 1731 inv-RD 1..762 17..778 3810 100 Plus
CG17835-PC 1731 inv-RC 1..762 17..778 3810 100 Plus
CG17835-PA 1731 inv-RA 1..762 17..778 3810 100 Plus
CG17835-PB 1731 inv-RB 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
inv-RE 4776 CG17835-RE 269..1030 17..778 3810 100 Plus
inv-RB 2261 CG17835-RB 269..1030 17..778 3810 100 Plus
inv-RD 3404 CG17835-RD 1412..2173 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11475976..11476737 17..778 3810 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:20:05 has no hits.

BS04495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:07 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17835-PC 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:04 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17835-PB 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:31:42 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
inv-RD 1412..2173 17..778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:09 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
inv-RD 1412..2173 17..778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:09 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11475976..11476737 17..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:31:42 Download gff for BS04495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7363481..7364242 17..778 100   Plus

BS04495.complete Sequence

1763 bp assembled on 2008-01-02

GenBank Submission: KX796133

> BS04495.complete
GAAGTTATCAGTCGACATGTCCACCTTGGCCAGCACTCGACCGCCCCCGC
TCAAGCTGACTATTCCTTCCTTAGAGGAGGCAGAGGACCACGCGCAGGAG
AGGAGAGCGGGCGGAGGTGGCCAGGAAGTAGGTAAAATGCATCCGGATTG
CTTGCCCTTGCCGCTTGTCCAGCCGGGCAACTCGCCCCAAGTGCGGGAGG
AGGAGGAGGACGAGCAGACGGAGTGCGAGGAGCAGCTGAACATAGAGGAT
GAAGAGGTCGAGGAGGAGCACGATTTGGACCTGGAGGATCCGGCCAGCTG
CTGCAGTGAGAATAGTGTCTTGAGTGTGGGCCAGGAACAATCGGAAGCAG
CACAGGCTGCGCTATCCGCTCAAGCTCAGGCCAGGCAGAGGCTTTTGATC
AGCCAAATCTATCGACCGTCGGCATTCAGCAGCACTGCTACCACTGTTTT
GCCGCCCAGCGAAGGTCCGCCCTTCTCACCCGAAGATCTCCTGCAACTGC
CTCCCTCCACTGGAACCTTCCAGGAGGAGTTCCTGCGAAAGTCCCAGCTG
TACGCCGAGGAGCTGATGAAACAGCAGATGCATCTAATGGCCGCCGCCAG
GGTGAACGCTCTCACGGCAGCGGCGGCGGGAAAACAGCTGCAAATGGCAA
TGGCGGCGGCGGCGGTTGCCACAGTGCCCAGCGGTCAGGATGCACTGGCT
CAGCTGACGGCCACGGCATTGGGTCTGGGACCCGGTGGAGCGGTGCATCC
CCATCAGCAATTGCTACTGCAAAGGGATCAGGTCCACCACCATCATCACA
TGCAGAATCACCTGAATAACAATGAAAATCTGCACGAAAGGGCGCTCAAA
TTCAGCATAGACAATATCCTGAAGGCGGACTTTGGTTCCAGATTGCCCAA
GATTGGTGCTTTAAGTGGCAATATCGGTGGTGGCAGTGTAAGTGGGAGCA
GTACTGGCAGCAGTAAAAATTCTGGAAATACCAATGGCAACAGATCTCCC
CTAAAGGCGCCCAAGAAGTCGGGAAAGCCACTGAATCTGGCTCAAAGTAA
CGCCGCCGCCAACTCGAGCTTGAGCTTCTCCAGCTCGCTGGCGAATATAT
GCAGCAACAGCAACGATTCCAATAGCACCGCCACCAGCAGCAGCACGACG
AACACCTCGGGGGCACCAGTGGATCTGGTCAAGTCGCCACCGCCAGCGGC
AGGAGCGGGTGCCACAGGAGCATCCGGTAAATCGGGCGAGGATTCCGGCA
CTCCCATCGTTTGGCCAGCGTGGGTCTACTGCACCCGCTACAGCGATCGT
CCCAGCTCAGGTCGAAGTCCACGAGCGCGAAAGCCCAAGAAGCCGGCGAC
GTCCAGTTCGGCGGCAGGTGGTGGGGGTGGGGGCGTCGAGAAGGGGGAGG
CCGCCGATGGGGGCGGGGTGCCGGAGGACAAAAGGCCGCGAACGGCCTTC
AGCGGAACGCAGTTGGCCAGACTGAAGCACGAGTTCAACGAGAATCGCTA
TCTGACGGAGAAGCGACGCCAGCAGCTGAGCGGGGAACTGGGACTGAACG
AGGCGCAGATCAAGATCTGGTTCCAGAACAAACGGGCCAAGCTGAAAAAG
TCGAGCGGCACCAAGAATCCGCTGGCGCTGCAGCTGATGGCGCAGGGATT
GTACAACCACTCGACGATACCGCTGACCCGCGAGGAGGAGGAGCTGCAGG
AGCTGCAGGAGGCGGCTAGTGCCGCTGCCGCCAAGGAGCCCTGCTAGAAG
CTTTCTAGACCAT

BS04495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
inv-RE 1731 CG17835-PE 1..1731 17..1747 8655 100 Plus
inv-RB 1731 CG17835-PB 1..1731 17..1747 8655 100 Plus
inv-RD 1731 CG17835-PD 1..1731 17..1747 8655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
inv-RE 4776 CG17835-RE 269..2002 17..1750 8670 100 Plus
inv-RB 2261 CG17835-RB 269..2002 17..1750 8670 100 Plus
inv-RD 3404 CG17835-RD 1412..3145 17..1750 8670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11475976..11477271 17..1312 6480 100 Plus
2R 25286936 2R 11506647..11506921 1476..1750 1375 100 Plus
2R 25286936 2R 11506069..11506229 1317..1477 805 100 Plus
2R 25286936 2R 11524630..11524844 1695..1481 670 87.4 Minus
2R 25286936 2R 11526357..11526407 1312..1262 210 94.1 Minus
Blast to na_te.dros performed 2014-11-28 05:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6955 1101..1238 159 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6883 1101..1226 147 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6900 1101..1222 146 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6694..6847 1074..1226 145 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..3013 945..1170 141 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6655..6867 1016..1229 138 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2430 1102..1156 131 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2902 1101..1222 129 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2382 1101..1156 127 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2438 1101..1235 124 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1578 1102..1156 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6881..6935 1102..1156 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2655 1102..1156 113 67.3 Plus

BS04495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:09 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
inv-RA 1..1731 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:04 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
inv-RA 1412..3142 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:06 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
inv-RD 1412..3142 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:09 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
inv-RA 1412..3145 17..1750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:20 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
inv-RD 1412..3142 17..1747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:20 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11475976..11477273 17..1316 99 -> Plus
2R 11506069..11506229 1317..1477 100 -> Plus
2R 11506649..11506918 1478..1747 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:06 Download gff for BS04495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7363481..7364778 17..1316 99 -> Plus
arm_2R 7393574..7393734 1317..1477 100 -> Plus
arm_2R 7394154..7394423 1478..1747 100   Plus

BS04495.pep Sequence

Translation from 16 to 1746

> BS04495.pep
MSTLASTRPPPLKLTIPSLEEAEDHAQERRAGGGGQEVGKMHPDCLPLPL
VQPGNSPQVREEEEDEQTECEEQLNIEDEEVEEEHDLDLEDPASCCSENS
VLSVGQEQSEAAQAALSAQAQARQRLLISQIYRPSAFSSTATTVLPPSEG
PPFSPEDLLQLPPSTGTFQEEFLRKSQLYAEELMKQQMHLMAAARVNALT
AAAAGKQLQMAMAAAAVATVPSGQDALAQLTATALGLGPGGAVHPHQQLL
LQRDQVHHHHHMQNHLNNNENLHERALKFSIDNILKADFGSRLPKIGALS
GNIGGGSVSGSSTGSSKNSGNTNGNRSPLKAPKKSGKPLNLAQSNAAANS
SLSFSSSLANICSNSNDSNSTATSSSTTNTSGAPVDLVKSPPPAAGAGAT
GASGKSGEDSGTPIVWPAWVYCTRYSDRPSSGRSPRARKPKKPATSSSAA
GGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKR
RQQLSGELGLNEAQIKIWFQNKRAKLKKSSGTKNPLALQLMAQGLYNHST
IPLTREEEELQELQEAASAAAAKEPC*

BS04495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
inv-PE 576 CG17835-PE 1..576 1..576 2948 100 Plus
inv-PB 576 CG17835-PB 1..576 1..576 2948 100 Plus
inv-PD 576 CG17835-PD 1..576 1..576 2948 100 Plus
en-PA 552 CG9015-PA 291..544 294..561 576 45.8 Plus
en-PB 552 CG9015-PB 291..544 294..561 576 45.8 Plus