Clone Sequence Records
BS04496.3prime Sequence
910 bp (809 high quality bases) assembled on 2005-12-01
> BS04496.3prime
ATGGTCTAGAAAGCTTCTAGTATTCCTCCTCCTCGTCAAAACCGTAGCCG
AACTCATCGTCGTCTCCGCCCGTGTTGAGCATGTCCTGAAGAGTGGCCTC
CGGTTCTGCCTCGGGTTCGACGTCAGGATCATCAGCATCTTCGTCCAGGT
CATCTGCTTCCACCACAACTGCTGGCTTGGTCTCCGCCTGCTCCACATCA
GCAGCTTTGCTGACTGGCAGACCCACTTCAAGTTTGGGACGTTTCCTACT
GGGTCCGGGCAGATCGTAGGCTGCCCTATTGCCCCTACTCTTGGAAGCAA
CAGGACCTTCTTCCACTATAACCGGCTGATGCTTCAGCTCTTCCAGAGTG
CTCGGTTTGGTATCGGCACTAGTTGTGGGAGAGTCATCCGTCAGCCCGCC
CATGCCGTCAGTCAGGGTCTTGAGAATCTCGTAGTTGATCTTACTGGAGA
TCTTCTTCTCCTGCAGCATCTTTTCAATGGCCTCGCCGGCGGTGGAGGAG
GGACCAATGACTTTCTTGCGTGGCTTTCGCTTCTTCCGCTCCGGCTTTCC
CTCCTCGCGTTCCTTGGCCAGCCGCTCGTCGCGTTCCTTCTGCTCTTGCA
GATACTCGGCATTGAGGTTCTTCCACATTTCCAACTTTGCCACCGACTCC
TCCTCTGTCAGAACGTACTGATCCAGTTCGTCGTCGTTCAGATCGTCGGT
GATGAGTTCTTGTTCTTGCGGCTGCTTAGCCTTTTCCACGTCCTCCAGAT
CGCTCTGGGTCACCCTGCAAATAGCCTCGATATCCGGCCGCAGGCCTTCA
ATCCCAGCCACCAAACCACCCGGTTCTGACTTCTTCACGTCCTCGTTCTT
GGCTATCAATTCCTTGATTACCTCTGCATTAGATTGTTCAATGAACTGCC
TGGACTCCTC
BS04496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31256-PA | 1989 | Brf-RA | 1096..1989 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 1271..2164 | 910..17 | 4470 | 100 | Minus |
| Brf-RA | 2975 | CG31256-RA | 1271..2164 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17375844..17376600 | 154..910 | 3785 | 100 | Plus |
| 3R | 32079331 | 3R | 17375644..17375783 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:50:56 has no hits.
BS04496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:08 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-PA | 1096..1989 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:05 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31256-PA | 1096..1989 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:09:03 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1271..2166 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:19 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1271..2166 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:19 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17375642..17375780 | 13..153 | 98 | <- | Plus |
| 3R | 17375844..17376600 | 154..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:09:03 Download gff for
BS04496.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13201364..13201502 | 13..153 | 98 | <- | Plus |
| arm_3R | 13201566..13202322 | 154..910 | 100 | | Plus |
BS04496.5prime Sequence
833 bp (769 high quality bases) assembled on 2005-12-01
> BS04496.5prime
GAAGTTATCAGTCGACATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT
CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC
TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA
GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT
CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG
GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC
ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC
TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG
AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG
CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT
ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC
ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT
GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG
TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC
CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG
CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC
GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCT
BS04496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31256-PA | 1989 | Brf-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 175..992 | 16..833 | 4090 | 100 | Plus |
| Brf-RA | 2975 | CG31256-RA | 175..992 | 16..833 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17390660..17391030 | 458..88 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 17377117..17377267 | 713..563 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17376934..17377055 | 833..712 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 17390496..17390600 | 563..459 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 17391090..17391163 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:52:06 has no hits.
BS04496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:09 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:06 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31256-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:42:33 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..992 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:48 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..992 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:48 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17376934..17377053 | 714..833 | 100 | <- | Minus |
| 3R | 17377117..17377266 | 564..713 | 100 | <- | Minus |
| 3R | 17390496..17390600 | 459..563 | 100 | <- | Minus |
| 3R | 17390660..17391028 | 90..458 | 100 | <- | Minus |
| 3R | 17391090..17391167 | 9..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:42:33 Download gff for
BS04496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13202656..13202775 | 714..833 | 100 | <- | Minus |
| arm_3R | 13202839..13202988 | 564..713 | 100 | <- | Minus |
| arm_3R | 13216218..13216322 | 459..563 | 100 | <- | Minus |
| arm_3R | 13216382..13216750 | 90..458 | 100 | <- | Minus |
| arm_3R | 13216812..13216889 | 9..89 | 95 | | Minus |
BS04496.complete Sequence
2021 bp assembled on 2008-01-02
GenBank Submission: KX796561
> BS04496.complete
GAAGTTATCAGTCGACATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT
CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC
TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA
GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT
CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG
GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC
ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC
TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG
AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG
CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT
ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC
ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT
GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG
TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC
CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG
CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC
GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCTCGGGAGGGCTAACCCTG
GAGGAGTTCATGACCGTTGACTTGGAGCGCGAACAGGATCCGCCTTCCTT
TAAGGCAGCACGCAAAAAGGATCGTGAGAGAATCAAAGATATGGGCGAGC
ATGAGCTAACAGAATTGCAAAAAGAAATTGATGCTCATCTGGAAAAAGAT
CTAGGCAAGTACTCAAACTCCGTTTACCGTCAGCTGACTAAGGGTAAGGG
ATTAAGTCCACTGAGCTCTCCAAGCACGCCCAATAGCAGCTCGGAAAAGG
ATATTGAACTGGAGGAGTCCAGGCAGTTCATTGAACAATCTAATGCAGAG
GTAATCAAGGAATTGATAGCCAAGAACGAGGACGTGAAGAAGTCAGAACC
GGGTGGTTTGGTGGCTGGGATTGAAGGCCTGCGGCCGGATATCGAGGCTA
TTTGCAGGGTGACCCAGAGCGATCTGGAGGACGTGGAAAAGGCTAAGCAG
CCGCAAGAACAAGAACTCATCACCGACGATCTGAACGACGACGAACTGGA
TCAGTACGTTCTGACAGAGGAGGAGTCGGTGGCAAAGTTGGAAATGTGGA
AGAACCTCAATGCCGAGTATCTGCAAGAGCAGAAGGAACGCGACGAGCGG
CTGGCCAAGGAACGCGAGGAGGGAAAGCCGGAGCGGAAGAAGCGAAAGCC
ACGCAAGAAAGTCATTGGTCCCTCCTCCACCGCCGGCGAGGCCATTGAAA
AGATGCTGCAGGAGAAGAAGATCTCCAGTAAGATCAACTACGAGATTCTC
AAGACCCTGACTGACGGCATGGGCGGGCTGACGGATGACTCTCCCACAAC
TAGTGCCGATACCAAACCGAGCACTCTGGAAGAGCTGAAGCATCAGCCGG
TTATAGTGGAAGAAGGTCCTGTTGCTTCCAAGAGTAGGGGCAATAGGGCA
GCCTACGATCTGCCCGGACCCAGTAGGAAACGTCCCAAACTTGAAGTGGG
TCTGCCAGTCAGCAAAGCTGCTGATGTGGAGCAGGCGGAGACCAAGCCAG
CAGTTGTGGTGGAAGCAGATGACCTGGACGAAGATGCTGATGATCCTGAC
GTCGAACCCGAGGCAGAACCGGAGGCCACTCTTCAGGACATGCTCAACAC
GGGCGGAGACGACGATGAGTTCGGCTACGGTTTTGACGAGGAGGAGGAAT
ACTAGAAGCTTTCTAGACCAT
BS04496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 1989 | CG31256-PB | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| Brf-RA | 1989 | CG31256-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 175..2164 | 16..2005 | 9950 | 100 | Plus |
| Brf-RA | 2975 | CG31256-RA | 175..2164 | 16..2005 | 9950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17375844..17376771 | 1868..941 | 4640 | 100 | Minus |
| 3R | 32079331 | 3R | 17390660..17391030 | 458..88 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 17376827..17377055 | 940..712 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 17377117..17377267 | 713..563 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17375644..17375783 | 2005..1866 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 17390496..17390600 | 563..459 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 17391090..17391163 | 89..16 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:00:15 has no hits.
BS04496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:10 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 1..1989 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:20 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 171..2159 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:11 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 176..2164 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:10 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 162..2161 | 9..2009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:05 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 176..2164 | 17..2005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:05 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17375644..17375780 | 1869..2005 | 100 | <- | Minus |
| 3R | 17375844..17376771 | 941..1868 | 100 | <- | Minus |
| 3R | 17376827..17377053 | 714..940 | 100 | <- | Minus |
| 3R | 17377117..17377266 | 564..713 | 100 | <- | Minus |
| 3R | 17390496..17390600 | 459..563 | 100 | <- | Minus |
| 3R | 17390660..17391028 | 90..458 | 100 | <- | Minus |
| 3R | 17391090..17391162 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:11 Download gff for
BS04496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13201366..13201502 | 1869..2005 | 100 | <- | Minus |
| arm_3R | 13201566..13202493 | 941..1868 | 100 | <- | Minus |
| arm_3R | 13202549..13202775 | 714..940 | 100 | <- | Minus |
| arm_3R | 13202839..13202988 | 564..713 | 100 | <- | Minus |
| arm_3R | 13216218..13216322 | 459..563 | 100 | <- | Minus |
| arm_3R | 13216382..13216750 | 90..458 | 100 | <- | Minus |
| arm_3R | 13216812..13216884 | 17..89 | 100 | | Minus |
BS04496.pep Sequence
Translation from 16 to 2004
> BS04496.pep
MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG
AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ
LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL
IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK
THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV
IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK
KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS
SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA
GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT
EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI
GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK
PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK
AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD
EFGYGFDEEEEY*
BS04496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-PB | 662 | CG31256-PB | 1..662 | 1..662 | 3392 | 100 | Plus |
| Brf-PA | 662 | CG31256-PA | 1..662 | 1..662 | 3392 | 100 | Plus |
| TfIIB-PB | 315 | CG5193-PB | 24..286 | 17..263 | 189 | 23.3 | Plus |
| TfIIB-PA | 315 | CG5193-PA | 24..286 | 17..263 | 189 | 23.3 | Plus |
