Clone BS04514 Report

Search the DGRC for BS04514

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptbsh-RB
Protein status:BS04514.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04514.5prime Sequence

799 bp (701 high quality bases) assembled on 2005-12-01

> BS04514.5prime
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGAGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGA

BS04514.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10604-PB 1290 bsh-RB 1..783 17..799 3890 99.8 Plus
CG10604-PA 864 bsh-RA 1..357 443..799 1760 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 139..921 17..799 3900 99.9 Plus
bsh-RB 2012 CG10604-RB 139..921 17..799 3900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19768485..19768929 461..17 2225 100 Minus
2L 23513712 2L 19767740..19768015 734..459 1380 100 Minus
2L 23513712 2L 19767286..19767352 799..733 320 98.5 Minus
Blast to na_te.dros performed 2015-02-12 01:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6944 179..372 135 57.8 Plus

BS04514.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:35 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 1..782 17..798 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:41 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 1..782 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:21 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..920 9..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:16 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..920 9..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:16 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19767287..19767350 735..798 98 <- Minus
2L 19767740..19768014 460..734 100 <- Minus
2L 19768487..19768936 9..459 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:21 Download gff for BS04514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19767287..19767350 735..798 98 <- Minus
arm_2L 19767740..19768014 460..734 100 <- Minus
arm_2L 19768487..19768936 9..459 99   Minus

BS04514.3prime Sequence

852 bp (796 high quality bases) assembled on 2005-12-01

> BS04514.3prime
ATGGTCTAGAAAGCTTCTATGTTAACTGGTAGAGTTTCGCATCGCCGACG
ATGTCCACGTCGCTGGAGTTGTCCTCGTCGCCACTGTCCGCCTCCAGATC
GGAGTAGTCATCCGTGGAGTAACCCTGCTGCATCAGGCACATCTGCAGCT
GCTGCTCGCTCGTCGGCTGAGTGGGTGTGCCGCCGACAGATCCGGGATTC
AGTTTGCCGTGCTTGGAGTCCCCGGATGAGGAGGTGGCCTCGCCCGGCTG
CTTGCCCGGTTCGCTGCGTGAGAAGTCGACGGGCTCATTGGCATTGTCGC
GCCGGCGCAGCTGCTTTTTGTGCTTCATGCGGCGGTTCTGGAACCAGGTC
TTCACCTGCGTCTCGCTGAGTCCCAAGGCGGTGGCCAGCTCCACACGCTC
CGGCGTGGACAGGTATCGCTGTCCCTCGAACCGCTTTTCCAGACCGGACA
GCTGCGGATCACTGAACACCGTGCGAGCCTTCCTCCGGCGGCAGTGGCGC
AGGGCATTCACGCCCATTCCCAGTCCGAGGGCCAGTTCCGGCACACAGCC
AGGCGCTCCGAAGAAGGGCGCTCCCCCGAACAGGCTGGCTTGTGATAGAA
AATAGGGATCCACGGACTTGTAGGTGCCCGACGACGGCGAGAGATATCCG
AGGGTCATTTGAAGAAATCCGTGATCGGTGTAGGGTGCATTCGGATAGAG
TACTCCATTGGATGCACCACTACCTCCATTCAGGGGCGGCGGAGGCGGAG
GTTGAGGTTGAGTCGTGGGCACCGGCGGATGTTGTGCTGCTCCAGATCCC
AACTGCTGCGAAATCTGATCTCCGGTGTAGTGGGAAGTTCCGTGTCGCGA
GT

BS04514.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10604-PA 864 bsh-RA 29..864 852..17 4155 99.8 Minus
CG10604-PB 1290 bsh-RB 455..1290 852..17 4155 99.8 Minus
CG5832-PA 792 Hmx-RA 537..574 365..328 140 94.7 Minus
CG1897-PA 1548 Dr-RA 1384..1415 364..333 135 96.8 Minus
CG1264-PA 1890 lab-RA 1641..1667 347..321 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 593..1429 852..16 4170 99.9 Minus
bsh-RB 2012 CG10604-RB 593..1429 852..16 4170 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19767048..19767352 286..590 1525 100 Plus
2L 23513712 2L 19766359..19766629 16..286 1355 100 Plus
2L 23513712 2L 19767740..19768003 589..852 1305 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 18:35:22 has no hits.

BS04514.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:34 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 455..1290 17..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:39 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10604-PB 455..1290 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:28 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 593..1434 11..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:34 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 593..1434 11..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:34 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19766354..19766628 11..285 99 <- Plus
2L 19767048..19767350 286..588 100 <- Plus
2L 19767740..19768003 589..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:28 Download gff for BS04514.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19766354..19766628 11..285 99 <- Plus
arm_2L 19767048..19767350 286..588 100 <- Plus
arm_2L 19767740..19768003 589..852 99   Plus

BS04514.complete Sequence

1322 bp (1322 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634962

> BS04514.complete
GAAGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTG
CGGACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCG
GCGGCGATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTC
CATCGAGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATA
ATAGTAGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCA
AAGAGCAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGA
CAATAATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCAC
ATCCGCCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAAC
CAGGCTGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAG
CACTCCACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACG
GAGATCAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCG
GTGCCCACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGG
TAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATC
ACGGATTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACC
TACAAGTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGG
AGCGCCCTTCTTCGGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGAC
TGGGAATGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGC
ACGGTGTTCAGTGATCCGCAGCTGTCCGGTCTGGAAAAGCGGTTCGAGGG
ACAGCGATACCTGTCCACGCCGGAGCGTGTGGAGCTGGCCACCGCCTTGG
GACTCAGCGAGACGCAGGTGAAGACCTGGTTCCAGAACCGCCGCATGAAG
CACAAAAAGCAGCTGCGCCGGCGCGACAATGCCAATGAGCCCGTCGACTT
CTCACGCAGCGAACCGGGCAAGCAGCCGGGCGAGGCCACCTCCTCATCCG
GGGACTCCAAGCACGGCAAACTGAATCCCGGATCTGTCGGCGGCACACCC
ACTCAGCCGACGAGCGAGCAGCAGCTGCAGATGTGCCTGATGCAGCAGGG
TTACTCCACGGATGACTACTCCGATCTGGAGGCGGACAGTGGCGACGAGG
ACAACTCCAGCGACGTGGACATCGTCGGCGATGCGAAACTCTACCAGTTA
ACATAGAAGCTTTCTAGACCAT

BS04514.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1290 CG10604-PC 1..1290 17..1306 6450 100 Plus
bsh-RB 1290 CG10604-PB 1..1290 17..1306 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-RC 1503 CG10604-RC 139..1429 17..1307 6455 100 Plus
bsh-RB 2012 CG10604-RB 139..1429 17..1307 6455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19768485..19768929 461..17 2225 100 Minus
2L 23513712 2L 19767048..19767352 1037..733 1525 100 Minus
2L 23513712 2L 19767740..19768015 734..459 1380 100 Minus
2L 23513712 2L 19766359..19766629 1307..1037 1355 100 Minus
Blast to na_te.dros performed 2014-11-27 23:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6944 179..372 135 57.8 Plus

BS04514.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:48 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 1..1290 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:52 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..1434 9..1312 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:09 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 139..1428 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:48 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 132..1434 9..1312 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:44 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
bsh-RB 139..1428 17..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:44 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19768487..19768929 17..459 100   Minus
2L 19766360..19766628 1038..1306 100 <- Minus
2L 19767048..19767350 735..1037 100 <- Minus
2L 19767740..19768014 460..734 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:09 Download gff for BS04514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19766360..19766628 1038..1306 100 <- Minus
arm_2L 19767048..19767350 735..1037 100 <- Minus
arm_2L 19767740..19768014 460..734 100 <- Minus
arm_2L 19768487..19768929 17..459 100   Minus

BS04514.pep Sequence

Translation from 16 to 1305

> BS04514.pep
MAMLNEASLSPADAHAHANATTPTHSKAAAMASATTMLTTKTPFSIEHIL
FQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHK
HPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRSN
HHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASN
GVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFG
APGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLS
TPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEP
GKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQLQMCLMQQGYSTDD
YSDLEADSGDEDNSSDVDIVGDAKLYQLT*

BS04514.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
bsh-PC 429 CG10604-PC 1..429 1..429 2269 100 Plus
bsh-PB 429 CG10604-PB 1..429 1..429 2269 100 Plus
Dbx-PC 741 CG42234-PC 249..495 94..335 252 31.5 Plus
Dll-PB 322 CG3629-PB 114..226 263..373 201 40.4 Plus
Dll-PA 327 CG3629-PA 114..226 263..373 201 40.4 Plus