Clone BS04520 Report

Search the DGRC for BS04520

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIEbeta-RA
Protein status:BS04520.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04520.3prime Sequence

909 bp (742 high quality bases) assembled on 2005-12-01

> BS04520.3prime
ATGGTCTAGAAAGCTTCTACGTTGGGTTCACACCCTTCAGCGTTAGTGTG
TTATCCTCGTAGACCTCCAGAACGTCGGCCAAATGTTCGTTGTCTCTGGG
CTTCTTGAACTGCCGCTTCTTGTTGGCCGCCTTCTTGCGCTTGGGAATTG
CTTTCTTGAGGCCATGGTCCTGCATGGAGCGAATGCCCTGCTTCTCGAGG
TACTCGTCAATCTTGGCGTCGTCCATTGCATCGACCGTAGCCGAGCGCCA
TAGCTTCTGGAACTCGTCGTCCACCGAAAAATTAGCAGTCCTGTCATTGT
AAAATAAAATCTTCTTTTTGTCAATGGGTCTAACAACAAAAAGTATTTCG
GCTGATCGGTTCTTCAGCACCTTTTCGCAGTGTGGTAGAGATTCCTGGAC
ATCGTCCAGCAAAATGCCGCCCAGGCCCTTTAAATCATGTTGCTTGAGCA
GACGCATCAGCGTTTTGCCATCCTTGATCTTGTAGACTGGCTTGAAACTG
AACTTGGTGCCACATGGACTGGCTTCCACCTTGGGATTGTTGTGCAGAGC
CTCGCTAGCAAGCCAATTCTTAACGGATTGCCCAATGTCCAGCTGGTTGG
TCTCGTCCAGAATCTCATCGATGGTCAGGGGATGGTCGTCGCCGTCCTGG
TGACGTGTGCGCATGAATTTCACAATCTTGGCCAGCACTCCAAAGCGGTA
CTGGGAACTGCCGGACATGGTCTTGTATGTTGTGGCATCCAGCCTGGGAG
CATTGGGCGGGCGCATTTTGCGCCTGGAATCATCGCTAGGCGGCGGTGGA
GCTGGTCTATCGGGCTTGGACTTCTTTTCCACGGTGGGCGTGGCCATCGC
CCGCTTTTTGAAGGCCTCGCGTTCGCGAAGCAGTGCTGGATCCATGTCGA
CTGATAACT

BS04520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1276-PA 879 TfIIEbeta-RA 1..879 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 108..993 900..15 4415 99.9 Minus
TfIIEbeta-RB 1121 CG1276-RB 247..1065 833..15 4095 100 Minus
TfIIEbeta-RB 1121 CG1276-RB 108..174 900..834 320 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287981 565..271 1475 100 Minus
3L 28110227 3L 4288033..4288293 275..15 1305 100 Minus
3L 28110227 3L 4287464..4287626 728..566 815 100 Minus
3L 28110227 3L 4287284..4287388 833..729 525 100 Minus
3L 28110227 3L 4287145..4287211 900..834 320 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 22:32:06 has no hits.

BS04520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:46 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..879 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:54 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..879 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:26:53 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..993 15..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:34 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..993 15..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:34 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4287284..4287388 729..833 100 -> Minus
3L 4287464..4287626 566..728 100 -> Minus
3L 4287142..4287211 834..903 97 -> Minus
3L 4287687..4287977 275..565 100 -> Minus
3L 4288034..4288293 15..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:26:53 Download gff for BS04520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4287464..4287626 566..728 100 -> Minus
arm_3L 4287142..4287211 834..903 97 -> Minus
arm_3L 4287284..4287388 729..833 100 -> Minus
arm_3L 4287687..4287977 275..565 100 -> Minus
arm_3L 4288034..4288293 15..274 100   Minus

BS04520.5prime Sequence

784 bp (754 high quality bases) assembled on 2005-12-01

> BS04520.5prime
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCG

BS04520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1276-PA 879 TfIIEbeta-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 108..880 12..784 3850 99.9 Plus
TfIIEbeta-RB 1121 CG1276-RB 247..952 79..784 3530 100 Plus
TfIIEbeta-RB 1121 CG1276-RB 108..174 12..78 320 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287981 347..641 1475 100 Plus
3L 28110227 3L 4287464..4287626 184..346 815 100 Plus
3L 28110227 3L 4288033..4288180 637..784 740 100 Plus
3L 28110227 3L 4287284..4287388 79..183 525 100 Plus
3L 28110227 3L 4287145..4287211 12..78 320 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 01:27:50 has no hits.

BS04520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:47 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:56 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1276-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:18 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..880 9..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:51 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..880 9..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:51 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4287142..4287211 9..78 97 -> Plus
3L 4287284..4287388 79..183 100 -> Plus
3L 4287464..4287626 184..346 100 -> Plus
3L 4287687..4287977 347..637 100 -> Plus
3L 4288034..4288180 638..784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:18 Download gff for BS04520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4287142..4287211 9..78 97 -> Plus
arm_3L 4287284..4287388 79..183 100 -> Plus
arm_3L 4287464..4287626 184..346 100 -> Plus
arm_3L 4287687..4287977 347..637 100 -> Plus
arm_3L 4288034..4288180 638..784 100   Plus

BS04520.complete Sequence

911 bp (911 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634963

> BS04520.complete
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCGGCCAACAAGAAGCGGC
AGTTCAAGAAGCCCAGAGACAACGAACATTTGGCCGACGTTCTGGAGGTC
TACGAGGATAACACACTAACGCTGAAGGGTGTGAACCCAACGTAGAAGCT
TTCTAGACCAT

BS04520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 879 CG1276-PA 1..879 17..895 4395 100 Plus
TfIIEbeta-RB 750 CG1276-PB 1..750 146..895 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-RA 1049 CG1276-RA 108..993 12..897 4415 99.9 Plus
TfIIEbeta-RB 1121 CG1276-RB 247..1065 79..897 4095 100 Plus
TfIIEbeta-RB 1121 CG1276-RB 108..174 12..78 320 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4287687..4287981 347..641 1475 100 Plus
3L 28110227 3L 4288033..4288293 637..897 1305 100 Plus
3L 28110227 3L 4287464..4287626 184..346 815 100 Plus
3L 28110227 3L 4287284..4287388 79..183 525 100 Plus
3L 28110227 3L 4287145..4287211 12..78 320 98.5 Plus
Blast to na_te.dros performed on 2014-11-27 10:05:32 has no hits.

BS04520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:29 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:28 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..993 9..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:32 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 113..991 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:29 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 105..993 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:46 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIEbeta-RA 113..991 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:46 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4288034..4288291 638..895 100   Plus
3L 4287150..4287211 17..78 100 -> Plus
3L 4287284..4287388 79..183 100 -> Plus
3L 4287464..4287626 184..346 100 -> Plus
3L 4287687..4287977 347..637 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:32 Download gff for BS04520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4287464..4287626 184..346 100 -> Plus
arm_3L 4287687..4287977 347..637 100 -> Plus
arm_3L 4287150..4287211 17..78 100 -> Plus
arm_3L 4287284..4287388 79..183 100 -> Plus
arm_3L 4288034..4288291 638..895 100   Plus

BS04520.pep Sequence

Translation from 16 to 894

> BS04520.pep
MDPALLREREAFKKRAMATPTVEKKSKPDRPAPPPPSDDSRRKMRPPNAP
RLDATTYKTMSGSSQYRFGVLAKIVKFMRTRHQDGDDHPLTIDEILDETN
QLDIGQSVKNWLASEALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLL
KQHDLKGLGGILLDDVQESLPHCEKVLKNRSAEILFVVRPIDKKKILFYN
DRTANFSVDDEFQKLWRSATVDAMDDAKIDEYLEKQGIRSMQDHGLKKAI
PKRKKAANKKRQFKKPRDNEHLADVLEVYEDNTLTLKGVNPT*

BS04520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIEbeta-PA 292 CG1276-PA 1..292 1..292 1525 100 Plus
TfIIEbeta-PB 249 CG1276-PB 1..249 44..292 1300 100 Plus