Clone Sequence Records
BS04520.3prime Sequence
909 bp (742 high quality bases) assembled on 2005-12-01
> BS04520.3prime
ATGGTCTAGAAAGCTTCTACGTTGGGTTCACACCCTTCAGCGTTAGTGTG
TTATCCTCGTAGACCTCCAGAACGTCGGCCAAATGTTCGTTGTCTCTGGG
CTTCTTGAACTGCCGCTTCTTGTTGGCCGCCTTCTTGCGCTTGGGAATTG
CTTTCTTGAGGCCATGGTCCTGCATGGAGCGAATGCCCTGCTTCTCGAGG
TACTCGTCAATCTTGGCGTCGTCCATTGCATCGACCGTAGCCGAGCGCCA
TAGCTTCTGGAACTCGTCGTCCACCGAAAAATTAGCAGTCCTGTCATTGT
AAAATAAAATCTTCTTTTTGTCAATGGGTCTAACAACAAAAAGTATTTCG
GCTGATCGGTTCTTCAGCACCTTTTCGCAGTGTGGTAGAGATTCCTGGAC
ATCGTCCAGCAAAATGCCGCCCAGGCCCTTTAAATCATGTTGCTTGAGCA
GACGCATCAGCGTTTTGCCATCCTTGATCTTGTAGACTGGCTTGAAACTG
AACTTGGTGCCACATGGACTGGCTTCCACCTTGGGATTGTTGTGCAGAGC
CTCGCTAGCAAGCCAATTCTTAACGGATTGCCCAATGTCCAGCTGGTTGG
TCTCGTCCAGAATCTCATCGATGGTCAGGGGATGGTCGTCGCCGTCCTGG
TGACGTGTGCGCATGAATTTCACAATCTTGGCCAGCACTCCAAAGCGGTA
CTGGGAACTGCCGGACATGGTCTTGTATGTTGTGGCATCCAGCCTGGGAG
CATTGGGCGGGCGCATTTTGCGCCTGGAATCATCGCTAGGCGGCGGTGGA
GCTGGTCTATCGGGCTTGGACTTCTTTTCCACGGTGGGCGTGGCCATCGC
CCGCTTTTTGAAGGCCTCGCGTTCGCGAAGCAGTGCTGGATCCATGTCGA
CTGATAACT
BS04520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1276-PA | 879 | TfIIEbeta-RA | 1..879 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 108..993 | 900..15 | 4415 | 99.9 | Minus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..1065 | 833..15 | 4095 | 100 | Minus |
TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 900..834 | 320 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287981 | 565..271 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 4288033..4288293 | 275..15 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 4287464..4287626 | 728..566 | 815 | 100 | Minus |
3L | 28110227 | 3L | 4287284..4287388 | 833..729 | 525 | 100 | Minus |
3L | 28110227 | 3L | 4287145..4287211 | 900..834 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:06 has no hits.
BS04520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:46 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..879 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:54 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..879 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:26:53 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..993 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:34 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..993 | 15..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:34 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4287284..4287388 | 729..833 | 100 | -> | Minus |
3L | 4287464..4287626 | 566..728 | 100 | -> | Minus |
3L | 4287142..4287211 | 834..903 | 97 | -> | Minus |
3L | 4287687..4287977 | 275..565 | 100 | -> | Minus |
3L | 4288034..4288293 | 15..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:26:53 Download gff for
BS04520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4287464..4287626 | 566..728 | 100 | -> | Minus |
arm_3L | 4287142..4287211 | 834..903 | 97 | -> | Minus |
arm_3L | 4287284..4287388 | 729..833 | 100 | -> | Minus |
arm_3L | 4287687..4287977 | 275..565 | 100 | -> | Minus |
arm_3L | 4288034..4288293 | 15..274 | 100 | | Minus |
BS04520.5prime Sequence
784 bp (754 high quality bases) assembled on 2005-12-01
> BS04520.5prime
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCG
BS04520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1276-PA | 879 | TfIIEbeta-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 108..880 | 12..784 | 3850 | 99.9 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..952 | 79..784 | 3530 | 100 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 12..78 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287981 | 347..641 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 4287464..4287626 | 184..346 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4288033..4288180 | 637..784 | 740 | 100 | Plus |
3L | 28110227 | 3L | 4287284..4287388 | 79..183 | 525 | 100 | Plus |
3L | 28110227 | 3L | 4287145..4287211 | 12..78 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:27:50 has no hits.
BS04520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:47 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:12:56 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1276-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:18 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..880 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:51 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..880 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:51 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4287142..4287211 | 9..78 | 97 | -> | Plus |
3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
3L | 4288034..4288180 | 638..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:18 Download gff for
BS04520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4287142..4287211 | 9..78 | 97 | -> | Plus |
arm_3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
arm_3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
arm_3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
arm_3L | 4288034..4288180 | 638..784 | 100 | | Plus |
BS04520.complete Sequence
911 bp (911 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634963
> BS04520.complete
GAAGTTATCAGTCGACATGGATCCAGCACTGCTTCGCGAACGCGAGGCCT
TCAAAAAGCGGGCGATGGCCACGCCCACCGTGGAAAAGAAGTCCAAGCCC
GATAGACCAGCTCCACCGCCGCCTAGCGATGATTCCAGGCGCAAAATGCG
CCCGCCCAATGCTCCCAGGCTGGATGCCACAACATACAAGACCATGTCCG
GCAGTTCCCAGTACCGCTTTGGAGTGCTGGCCAAGATTGTGAAATTCATG
CGCACACGTCACCAGGACGGCGACGACCATCCCCTGACCATCGATGAGAT
TCTGGACGAGACCAACCAGCTGGACATTGGGCAATCCGTTAAGAATTGGC
TTGCTAGCGAGGCTCTGCACAACAATCCCAAGGTGGAAGCCAGTCCATGT
GGCACCAAGTTCAGTTTCAAGCCAGTCTACAAGATCAAGGATGGCAAAAC
GCTGATGCGTCTGCTCAAGCAACATGATTTAAAGGGCCTGGGCGGCATTT
TGCTGGACGATGTCCAGGAATCTCTACCACACTGCGAAAAGGTGCTGAAG
AACCGATCAGCCGAAATACTTTTTGTTGTTAGACCCATTGACAAAAAGAA
GATTTTATTTTACAATGACAGGACTGCTAATTTTTCGGTGGACGACGAGT
TCCAGAAGCTATGGCGCTCGGCTACGGTCGATGCAATGGACGACGCCAAG
ATTGACGAGTACCTCGAGAAGCAGGGCATTCGCTCCATGCAGGACCATGG
CCTCAAGAAAGCAATTCCCAAGCGCAAGAAGGCGGCCAACAAGAAGCGGC
AGTTCAAGAAGCCCAGAGACAACGAACATTTGGCCGACGTTCTGGAGGTC
TACGAGGATAACACACTAACGCTGAAGGGTGTGAACCCAACGTAGAAGCT
TTCTAGACCAT
BS04520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 879 | CG1276-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
TfIIEbeta-RB | 750 | CG1276-PB | 1..750 | 146..895 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-RA | 1049 | CG1276-RA | 108..993 | 12..897 | 4415 | 99.9 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 247..1065 | 79..897 | 4095 | 100 | Plus |
TfIIEbeta-RB | 1121 | CG1276-RB | 108..174 | 12..78 | 320 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4287687..4287981 | 347..641 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 4288033..4288293 | 637..897 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 4287464..4287626 | 184..346 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4287284..4287388 | 79..183 | 525 | 100 | Plus |
3L | 28110227 | 3L | 4287145..4287211 | 12..78 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:05:32 has no hits.
BS04520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:29 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:28 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..993 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:32 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 113..991 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:29 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 105..993 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:46 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIEbeta-RA | 113..991 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:46 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4288034..4288291 | 638..895 | 100 | | Plus |
3L | 4287150..4287211 | 17..78 | 100 | -> | Plus |
3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:32 Download gff for
BS04520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4287464..4287626 | 184..346 | 100 | -> | Plus |
arm_3L | 4287687..4287977 | 347..637 | 100 | -> | Plus |
arm_3L | 4287150..4287211 | 17..78 | 100 | -> | Plus |
arm_3L | 4287284..4287388 | 79..183 | 100 | -> | Plus |
arm_3L | 4288034..4288291 | 638..895 | 100 | | Plus |
BS04520.pep Sequence
Translation from 16 to 894
> BS04520.pep
MDPALLREREAFKKRAMATPTVEKKSKPDRPAPPPPSDDSRRKMRPPNAP
RLDATTYKTMSGSSQYRFGVLAKIVKFMRTRHQDGDDHPLTIDEILDETN
QLDIGQSVKNWLASEALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLL
KQHDLKGLGGILLDDVQESLPHCEKVLKNRSAEILFVVRPIDKKKILFYN
DRTANFSVDDEFQKLWRSATVDAMDDAKIDEYLEKQGIRSMQDHGLKKAI
PKRKKAANKKRQFKKPRDNEHLADVLEVYEDNTLTLKGVNPT*
BS04520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIEbeta-PA | 292 | CG1276-PA | 1..292 | 1..292 | 1525 | 100 | Plus |
TfIIEbeta-PB | 249 | CG1276-PB | 1..249 | 44..292 | 1300 | 100 | Plus |