Clone BS04523 Report

Search the DGRC for BS04523

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:23
Vector:pDNR-Dual
Associated Gene/Transcripte(y)2-RA
Protein status:BS04523.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04523.3prime Sequence

336 bp (335 high quality bases) assembled on 2005-12-01

> BS04523.3prime
ATGGTCTAGAAAGCTTTTAGGATTCGTCCTCTGGCTCATCGGGTTCCTCC
TCAATTTCCGTGAGAATGGTGCGTATCTTCATAAGCAGCTCCTTTTTGAC
GGCATCCGGGACCAGGGTGCGTGCCTTGGGTGTTACCTCGGCGATCAGCT
GCTCTACGGTGAAGCTGTTGTTGGTGCCCTTCTCCATCAGGATGTTGCGG
CACATCAGACGCACCTCGTCCCGCCAGCCACATTCCGTAAGGCGGCTGCA
GAGCAAATCCTTGATCTTGGAACGGTCGCCGGTTAGCACCGTGTACTGAT
CAACTGCGCCGGAAGTGCTCATGTCGACTGATAACT

BS04523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..306 322..17 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..448 322..17 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576173..11576478 17..322 1530 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:33:08 has no hits.

BS04523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:52 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:03 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:38 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..329 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:55 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..329 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:55 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576481 10..329 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:38 Download gff for BS04523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470514 10..329 97   Plus

BS04523.5prime Sequence

336 bp (335 high quality bases) assembled on 2005-12-01

> BS04523.5prime
GAAGTTATCAGTCGACATGAGCACTTCCGGCGCAGTTGATCAGTACACGG
TGCTAACCGGCGACCGTTCCAAGATCAAGGATTTGCTCTGCAGCCGCCTT
ACGGAATGTGGCTGGCGGGACGAGGTGCGTCTGATGTGCCGCAACATCCT
GATGGAGAAGGGCACCAACAACAGCTTCACCGTAGAGCAGCTGATCGCCG
AGGTAACACCCAAGGCACGCACCCTGGTCCCGGATGCCGTCAAAAAGGAG
CTGCTTATGAAGATACGCACCATTCTCACGGAAATTGAGGAGGAACCCGA
TGAGCCAGAGGACGAATCCTAAAAGCTTTCTAGACC

BS04523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15191-PA 306 e(y)2-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..448 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576173..11576478 322..17 1530 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:04:02 has no hits.

BS04523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:53 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:04 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15191-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:54 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..329 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:31:55 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 140..452 10..329 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:31:55 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11576169..11576481 10..329 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:54 Download gff for BS04523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470202..11470514 10..329 97   Minus

BS04523.complete Sequence

338 bp (338 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634964

> BS04523.complete
GAAGTTATCAGTCGACATGAGCACTTCCGGCGCAGTTGATCAGTACACGG
TGCTAACCGGCGACCGTTCCAAGATCAAGGATTTGCTCTGCAGCCGCCTT
ACGGAATGTGGCTGGCGGGACGAGGTGCGTCTGATGTGCCGCAACATCCT
GATGGAGAAGGGCACCAACAACAGCTTCACCGTAGAGCAGCTGATCGCCG
AGGTAACACCCAAGGCACGCACCCTGGTCCCGGATGCCGTCAAAAAGGAG
CTGCTTATGAAGATACGCACCATTCTCACGGAAATTGAGGAGGAACCCGA
TGAGCCAGAGGACGAATCCTAAAAGCTTTCTAGACCAT

BS04523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 306 CG15191-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-RA 503 CG15191-RA 143..448 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11576173..11576478 322..17 1530 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:05:19 has no hits.

BS04523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:07 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:01 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 115..427 10..329 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:02 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 143..446 17..320 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:07 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 115..427 10..329 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:09 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)2-RA 143..446 17..320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:09 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
X 11576175..11576478 17..320 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:02 Download gff for BS04523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11470208..11470511 17..320 100   Minus

BS04523.pep Sequence

Translation from 16 to 321

> BS04523.pep
MSTSGAVDQYTVLTGDRSKIKDLLCSRLTECGWRDEVRLMCRNILMEKGT
NNSFTVEQLIAEVTPKARTLVPDAVKKELLMKIRTILTEIEEEPDEPEDE
S*

BS04523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)2-PA 101 CG15191-PA 1..101 1..101 514 100 Plus
e(y)2b-PB 95 CG14612-PB 18..93 11..87 181 41.6 Plus
e(y)2b-PA 95 CG14612-PA 18..93 11..87 181 41.6 Plus