Clone Sequence Records
BS04526.3prime Sequence
957 bp (846 high quality bases) assembled on 2005-12-01
> BS04526.3prime
ATGGTCTAGAAAGCTTTCAATCCTGGGAGTCGCCAGCATTGCTGGTGCGA
TCCAACCCTATGCCGCCCGCTCCGTTGGACTCGGATTGCTCGATATCCGC
CGCACTGAGCACTCCCGGAAGGTAGCCGGTTCCGGCGTAGGGAGCAGTCA
GGAATCGCTTGGCGTGCGCCTGCATGAAGGGATGGTAGCGATGGGTGGGG
GAGCCGAAAACCGAGGGCGGCACCAGCGGGGAGAAGGCGGACTTCATGGG
AAAGGGCGGCGATGGCGGCACCTGCGGCGGAGTCTGTCCCAAATCCTCGC
CAGCCAGCATGCACTCCATGGCCTGGAGCACGTCGCCACGGAACCGCTGC
ATCAGCTGCTCCACATCGCTGCGCCGTCGGTTGGGGAACACCCTCATCAG
GACGTCGATGGGCGATCTCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCT
GGTGGTGCTGTGGCAGGTGGTTCTGCTGCTGCTGCTGCTGCTGTTGCTGC
TGCTGGTGGTGCGGCGAGTGTGCCGCTGGGTGGTGGTGGGCGGGCAGGCC
GGCGGCGGCCAGGAACTGCGTGTGGTGATATGGCAGGAAGCCCTGGGCAT
GACTGCTGCTGAAGGATCGCAGCAGATGAAGATTCTCGGCGGGCGTGTTG
GGCGGCGACTGGCTGTCCTCCTTCTTGAGACTGAGATTCTCCGGCGTGGC
CTCATCCGGCGCCGAATCCACGTCCAGATCCGATTCCGGCGAGCTGGGCG
GTCCAGTGCGGGCGGGCGACAAGCTGGCGGTCAGATTGAACAGTCCGGCG
ACCTTGGGCCGGGGACTACTCGGCGATCCGGACTCGGAGCCCGTGTCCTG
TTCGGTCTCGTTCGACAGGGCTGCTCCGCGCTTGGACACAGGACTCTCAT
CCAGCTCGGTTCTGGTGGGCGAGAAACCGACGCTGAGGTGCTCGGAACGG
GTGCGTC
BS04526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15504-PA | 1533 | dmrt99B-RA | 593..1533 | 957..17 | 4680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 809..1749 | 957..17 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29695552..29696424 | 889..17 | 4350 | 99.9 | Minus |
3R | 32079331 | 3R | 29693769..29693837 | 957..889 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:13 has no hits.
BS04526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:55 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 593..1533 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:06 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 593..1533 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:09 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 809..1752 | 13..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:31 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 809..1752 | 13..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:31 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29693769..29693837 | 889..957 | 100 | -> | Minus |
3R | 29695553..29696427 | 13..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:09 Download gff for
BS04526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25519491..25519559 | 889..957 | 100 | -> | Minus |
arm_3R | 25521275..25522149 | 13..888 | 99 | | Minus |
BS04526.5prime Sequence
799 bp (797 high quality bases) assembled on 2005-12-01
> BS04526.5prime
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCG
BS04526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15504-PA | 1533 | dmrt99B-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 211..999 | 11..799 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29693423..29693837 | 263..677 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29692801..29692955 | 11..165 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 29695552..29695674 | 677..799 | 615 | 100 | Plus |
3R | 32079331 | 3R | 29693037..29693143 | 163..269 | 535 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 230..176 | 122 | 69.1 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 230..176 | 122 | 69.1 | Minus |
BS04526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:56 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:07 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:15 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..999 | 8..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:26 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..999 | 8..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:26 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29693426..29693837 | 266..677 | 100 | -> | Plus |
3R | 29695553..29695674 | 678..799 | 100 | | Plus |
3R | 29692797..29692953 | 8..163 | 98 | -> | Plus |
3R | 29693038..29693139 | 164..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:15 Download gff for
BS04526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25518519..25518675 | 8..163 | 98 | -> | Plus |
arm_3R | 25518760..25518861 | 164..265 | 100 | -> | Plus |
arm_3R | 25519148..25519559 | 266..677 | 100 | -> | Plus |
arm_3R | 25521275..25521396 | 678..799 | 100 | | Plus |
BS04526.complete Sequence
1565 bp (1565 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634965
> BS04526.complete
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAGGAGGA
CAGCCAGTCGCCGCCCAACACGCCCGCCGAGAATCTTCATCTGCTGCGAT
CCTTCAGCAGCAGTCATGCCCAGGGCTTCCTGCCATATCACCACACGCAG
TTCCTGGCCGCCGCCGGCCTGCCCGCCCACCACCACCCAGCGGCACACTC
GCCGCACCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAACCACC
TGCCACAGCACCACCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGAGA
TCGCCCATCGACGTCCTGATGAGGGTGTTCCCCAACCGACGGCGCAGCGA
TGTGGAGCAGCTGATGCAGCGGTTCCGTGGCGACGTGCTCCAGGCCATGG
AGTGCATGCTGGCTGGCGAGGATTTGGGACAGACTCCGCCGCAGGTGCCG
CCATCGCCGCCCTTTCCCATGAAGTCCGCCTTCTCCCCGCTGGTGCCGCC
CTCGGTTTTCGGCTCCCCCACCCATCGCTACCATCCCTTCATGCAGGCGC
ACGCCAAGCGATTCCTGACTGCTCCCTACGCCGGAACCGGCTACCTTCCG
GGAGTGCTCAGTGCGGCGGATATCGAGCAATCCGAGTCCAACGGAGCGGG
CGGCATAGGGTTGGATCGCACCAGCAATGCTGGCGACTCCCAGGATTGAA
AGCTTTCTAGACCAT
BS04526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 1533 | CG15504-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 211..1749 | 11..1549 | 7680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29695552..29696424 | 677..1549 | 4365 | 100 | Plus |
3R | 32079331 | 3R | 29693423..29693837 | 263..677 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29692801..29692955 | 11..165 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 29693037..29693143 | 163..269 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 230..176 | 122 | 69.1 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 230..176 | 122 | 69.1 | Minus |
BS04526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:41 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:44 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:34 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 217..1748 | 17..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:42 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 1..1533 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:29 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 217..1748 | 17..1548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:29 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29692807..29692953 | 17..163 | 100 | -> | Plus |
3R | 29693038..29693139 | 164..265 | 100 | -> | Plus |
3R | 29693426..29693837 | 266..677 | 100 | -> | Plus |
3R | 29695553..29696423 | 678..1548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:34 Download gff for
BS04526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25518529..25518675 | 17..163 | 100 | -> | Plus |
arm_3R | 25518760..25518861 | 164..265 | 100 | -> | Plus |
arm_3R | 25519148..25519559 | 266..677 | 100 | -> | Plus |
arm_3R | 25521275..25522145 | 678..1548 | 100 | | Plus |
BS04526.pep Sequence
Translation from 16 to 1548
> BS04526.pep
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQD*
BS04526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-PA | 510 | CG15504-PA | 1..510 | 1..510 | 2718 | 100 | Plus |
dmrt11E-PA | 377 | CG15749-PA | 115..233 | 34..137 | 275 | 50.4 | Plus |
dsx-PF | 427 | CG11094-PF | 42..324 | 39..286 | 262 | 29.1 | Plus |
dsx-PC | 427 | CG11094-PC | 42..324 | 39..286 | 262 | 29.1 | Plus |
dsx-PB | 427 | CG11094-PB | 42..324 | 39..286 | 262 | 29.1 | Plus |