Clone BS04526 Report

Search the DGRC for BS04526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptdmrt99B-RA
Protein status:BS04526.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04526.3prime Sequence

957 bp (846 high quality bases) assembled on 2005-12-01

> BS04526.3prime
ATGGTCTAGAAAGCTTTCAATCCTGGGAGTCGCCAGCATTGCTGGTGCGA
TCCAACCCTATGCCGCCCGCTCCGTTGGACTCGGATTGCTCGATATCCGC
CGCACTGAGCACTCCCGGAAGGTAGCCGGTTCCGGCGTAGGGAGCAGTCA
GGAATCGCTTGGCGTGCGCCTGCATGAAGGGATGGTAGCGATGGGTGGGG
GAGCCGAAAACCGAGGGCGGCACCAGCGGGGAGAAGGCGGACTTCATGGG
AAAGGGCGGCGATGGCGGCACCTGCGGCGGAGTCTGTCCCAAATCCTCGC
CAGCCAGCATGCACTCCATGGCCTGGAGCACGTCGCCACGGAACCGCTGC
ATCAGCTGCTCCACATCGCTGCGCCGTCGGTTGGGGAACACCCTCATCAG
GACGTCGATGGGCGATCTCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGCT
GGTGGTGCTGTGGCAGGTGGTTCTGCTGCTGCTGCTGCTGCTGTTGCTGC
TGCTGGTGGTGCGGCGAGTGTGCCGCTGGGTGGTGGTGGGCGGGCAGGCC
GGCGGCGGCCAGGAACTGCGTGTGGTGATATGGCAGGAAGCCCTGGGCAT
GACTGCTGCTGAAGGATCGCAGCAGATGAAGATTCTCGGCGGGCGTGTTG
GGCGGCGACTGGCTGTCCTCCTTCTTGAGACTGAGATTCTCCGGCGTGGC
CTCATCCGGCGCCGAATCCACGTCCAGATCCGATTCCGGCGAGCTGGGCG
GTCCAGTGCGGGCGGGCGACAAGCTGGCGGTCAGATTGAACAGTCCGGCG
ACCTTGGGCCGGGGACTACTCGGCGATCCGGACTCGGAGCCCGTGTCCTG
TTCGGTCTCGTTCGACAGGGCTGCTCCGCGCTTGGACACAGGACTCTCAT
CCAGCTCGGTTCTGGTGGGCGAGAAACCGACGCTGAGGTGCTCGGAACGG
GTGCGTC

BS04526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15504-PA 1533 dmrt99B-RA 593..1533 957..17 4680 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 809..1749 957..17 4690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29695552..29696424 889..17 4350 99.9 Minus
3R 32079331 3R 29693769..29693837 957..889 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:13 has no hits.

BS04526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:55 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 593..1533 17..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:06 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 593..1533 17..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:09 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 809..1752 13..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:31 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 809..1752 13..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:31 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29693769..29693837 889..957 100 -> Minus
3R 29695553..29696427 13..888 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:09 Download gff for BS04526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25519491..25519559 889..957 100 -> Minus
arm_3R 25521275..25522149 13..888 99   Minus

BS04526.5prime Sequence

799 bp (797 high quality bases) assembled on 2005-12-01

> BS04526.5prime
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCG

BS04526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15504-PA 1533 dmrt99B-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 211..999 11..799 3930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29693423..29693837 263..677 2075 100 Plus
3R 32079331 3R 29692801..29692955 11..165 760 99.4 Plus
3R 32079331 3R 29695552..29695674 677..799 615 100 Plus
3R 32079331 3R 29693037..29693143 163..269 535 100 Plus
Blast to na_te.dros performed 2015-02-12 01:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 230..176 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 230..176 122 69.1 Minus

BS04526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:56 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:07 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:00:15 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..999 8..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:26 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..999 8..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:26 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29693426..29693837 266..677 100 -> Plus
3R 29695553..29695674 678..799 100   Plus
3R 29692797..29692953 8..163 98 -> Plus
3R 29693038..29693139 164..265 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:00:15 Download gff for BS04526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518519..25518675 8..163 98 -> Plus
arm_3R 25518760..25518861 164..265 100 -> Plus
arm_3R 25519148..25519559 266..677 100 -> Plus
arm_3R 25521275..25521396 678..799 100   Plus

BS04526.complete Sequence

1565 bp (1565 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634965

> BS04526.complete
GAAGTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACATGCAGAATC
TGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCTTTCTTCTTG
CGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGCCCGCTGCAG
GAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCTACTGCCGCT
GGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAACGCCAAAGG
GTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCAAGAAGAGAA
CGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTGGCCAGCAGA
ATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAACCACAGCGGC
AGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGTCTTCCACGG
CGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCTCCACTCCCA
ATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCACCAACAGCAC
CTTAGCCACCCACACCAGCAGTCCCAGCGGTTCAATGGCAATGAATCCGA
CACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGGTTTCTCGCCCA
CCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGCGGAGCAGCCCTG
TCGAACGAGACCGACCAGGACACGGGCTCCGAGTCCGGATCGCCGAGTAG
TCCCCGGCCCAAGGTCGCCGGACTGTTCAATCTGACCGCCAGCTTGTCGC
CCGCCCGCACTGGACCGCCCAGCTCGCCGGAATCGGATCTGGACGTGGAT
TCGGCGCCGGATGAGGCCACGCCGGAGAATCTCAGTCTCAAGAAGGAGGA
CAGCCAGTCGCCGCCCAACACGCCCGCCGAGAATCTTCATCTGCTGCGAT
CCTTCAGCAGCAGTCATGCCCAGGGCTTCCTGCCATATCACCACACGCAG
TTCCTGGCCGCCGCCGGCCTGCCCGCCCACCACCACCCAGCGGCACACTC
GCCGCACCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAACCACC
TGCCACAGCACCACCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGAGA
TCGCCCATCGACGTCCTGATGAGGGTGTTCCCCAACCGACGGCGCAGCGA
TGTGGAGCAGCTGATGCAGCGGTTCCGTGGCGACGTGCTCCAGGCCATGG
AGTGCATGCTGGCTGGCGAGGATTTGGGACAGACTCCGCCGCAGGTGCCG
CCATCGCCGCCCTTTCCCATGAAGTCCGCCTTCTCCCCGCTGGTGCCGCC
CTCGGTTTTCGGCTCCCCCACCCATCGCTACCATCCCTTCATGCAGGCGC
ACGCCAAGCGATTCCTGACTGCTCCCTACGCCGGAACCGGCTACCTTCCG
GGAGTGCTCAGTGCGGCGGATATCGAGCAATCCGAGTCCAACGGAGCGGG
CGGCATAGGGTTGGATCGCACCAGCAATGCTGGCGACTCCCAGGATTGAA
AGCTTTCTAGACCAT

BS04526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 1533 CG15504-PA 1..1533 17..1549 7665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 211..1749 11..1549 7680 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29695552..29696424 677..1549 4365 100 Plus
3R 32079331 3R 29693423..29693837 263..677 2075 100 Plus
3R 32079331 3R 29692801..29692955 11..165 760 99.4 Plus
3R 32079331 3R 29693037..29693143 163..269 535 100 Plus
Blast to na_te.dros performed 2014-11-28 01:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 230..176 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 230..176 122 69.1 Minus

BS04526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:41 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:44 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:34 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 217..1748 17..1548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:42 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 17..1549 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:29 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 217..1748 17..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:29 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29692807..29692953 17..163 100 -> Plus
3R 29693038..29693139 164..265 100 -> Plus
3R 29693426..29693837 266..677 100 -> Plus
3R 29695553..29696423 678..1548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:34 Download gff for BS04526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518529..25518675 17..163 100 -> Plus
arm_3R 25518760..25518861 164..265 100 -> Plus
arm_3R 25519148..25519559 266..677 100 -> Plus
arm_3R 25521275..25522145 678..1548 100   Plus

BS04526.pep Sequence

Translation from 16 to 1548

> BS04526.pep
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQD*

BS04526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-PA 510 CG15504-PA 1..510 1..510 2718 100 Plus
dmrt11E-PA 377 CG15749-PA 115..233 34..137 275 50.4 Plus
dsx-PF 427 CG11094-PF 42..324 39..286 262 29.1 Plus
dsx-PC 427 CG11094-PC 42..324 39..286 262 29.1 Plus
dsx-PB 427 CG11094-PB 42..324 39..286 262 29.1 Plus