Clone Sequence Records
BS04527.3prime Sequence
828 bp (827 high quality bases) assembled on 2005-12-01
> BS04527.3prime
ATGGTCTAGAAAGCTTTCAATTATTAAAACTTTGCACAACTTCTGTAAAT
GTTACCTCGCTGACCTCGGTGATTTCAATCTCACGCTTTCTTTTGCATTT
ATCCGGCATCTGGCAAGTTTTCAGATGACGGTGAAGGAAACCCTCATATT
TGTACTTTTTCCCACAACGATCACAGATTAATTCGGGCCTTCTCTTCCCT
AAGATCTTTTTCTCCTCCTCCTGGGCCTTCAGCCTTACGATACATGCGTC
GCACGCGTATCGACGGGTCACTTGGCCAGGCTTAAAGCAGGCCTTGAACT
CCGTGCGACAAAAGACGCAATTGAAGGTCTTGGTGATGGTGTACGCCCCT
TCGTAGGATTCATCCGTGGACTCGCACGGTATCAGATGGCTCTCCAAATG
GGTGCGATACTCCAGATCCGTCCCGAACTTGACATGGCAGGATGCACAGG
TGCGATTCATTGATGGGCTTCCATGCAGGAGCCTGTGGCCGATCAGGGCA
TCCACCGAGGAGAAGATTTTCTTGCAAATGTTGCACTGATGCTGGGACAC
GTCCGGCACATCCTTCATCATGCGTGCCAAGCGTCTTTGGCAGGCCATCA
GATGGACCTTGTAGGCACCGGCCGTGCGAATCACATTAGAGCAAAGCGGA
CAGTGGAAGCGTTGCGTGTTGTCCTCCAGGAAAACTTTCTCCTCTTTTAT
CGGCTGCAAACAGGGCGCCACGTACACCTTGGTAACAATACCATTATCCT
CCTGAATCGACAGTAGAGTAGCTGGTTCCAGCTCCTCGGAAATCCAGTTG
CCAGCACTTGTCATGTCGACTGATAACT
BS04527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-PA | 798 | CG15710-RA | 1..798 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-RA | 914 | CG15710-RA | 62..859 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16347669..16348466 | 17..814 | 3990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:23:26 has no hits.
BS04527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:57 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-PA | 1..798 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:09 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-PA | 1..798 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:00 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 56..861 | 11..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:07 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 56..861 | 11..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:07 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16347667..16348472 | 11..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:00 Download gff for
BS04527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12235172..12235977 | 11..821 | 99 | | Plus |
BS04527.5prime Sequence
832 bp (738 high quality bases) assembled on 2005-12-01
> BS04527.5prime
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATTGAAAGCTTTCTAGACCATTT
BS04527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-PA | 798 | CG15710-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-RA | 914 | CG15710-RA | 62..859 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16347669..16348466 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:14:12 has no hits.
BS04527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:50:58 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:10 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:11:57 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 56..861 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:35 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 56..861 | 10..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:35 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16347667..16348472 | 10..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:11:57 Download gff for
BS04527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12235172..12235977 | 10..820 | 99 | | Minus |
BS04527.complete Sequence
830 bp (830 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634966
> BS04527.complete
GAAGTTATCAGTCGACATGACAAGTGCTGGCAACTGGATTTCCGAGGAGC
TGGAACCAGCTACTCTACTGTCGATTCAGGAGGATAATGGTATTGTTACC
AAGGTGTACGTGGCGCCCTGTTTGCAGCCGATAAAAGAGGAGAAAGTTTT
CCTGGAGGACAACACGCAACGCTTCCACTGTCCGCTTTGCTCTAATGTGA
TTCGCACGGCCGGTGCCTACAAGGTCCATCTGATGGCCTGCCAAAGACGC
TTGGCACGCATGATGAAGGATGTGCCGGACGTGTCCCAGCATCAGTGCAA
CATTTGCAAGAAAATCTTCTCCTCGGTGGATGCCCTGATCGGCCACAGGC
TCCTGCATGGAAGCCCATCAATGAATCGCACCTGTGCATCCTGCCATGTC
AAGTTCGGGACGGATCTGGAGTATCGCACCCATTTGGAGAGCCATCTGAT
ACCGTGCGAGTCCACGGATGAATCCTACGAAGGGGCGTACACCATCACCA
AGACCTTCAATTGCGTCTTTTGTCGCACGGAGTTCAAGGCCTGCTTTAAG
CCTGGCCAAGTGACCCGTCGATACGCGTGCGACGCATGTATCGTAAGGCT
GAAGGCCCAGGAGGAGGAGAAAAAGATCTTAGGGAAGAGAAGGCCCGAAT
TAATCTGTGATCGTTGTGGGAAAAAGTACAAATATGAGGGTTTCCTTCAC
CGTCATCTGAAAACTTGCCAGATGCCGGATAAATGCAAAAGAAAGCGTGA
GATTGAAATCACCGAGGTCAGCGAGGTAACATTTACAGAAGTTGTGCAAA
GTTTTAATAATTGAAAGCTTTCTAGACCAT
BS04527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-RA | 798 | CG15710-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-RA | 914 | CG15710-RA | 62..859 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16347669..16348466 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:07 has no hits.
BS04527.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:43 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:45 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:12 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 62..858 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:43 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:01 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15710-RA | 62..858 | 17..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:01 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16347670..16348466 | 17..813 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:12 Download gff for
BS04527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12235175..12235971 | 17..813 | 100 | | Minus |
BS04527.pep Sequence
Translation from 16 to 813
> BS04527.pep
MTSAGNWISEELEPATLLSIQEDNGIVTKVYVAPCLQPIKEEKVFLEDNT
QRFHCPLCSNVIRTAGAYKVHLMACQRRLARMMKDVPDVSQHQCNICKKI
FSSVDALIGHRLLHGSPSMNRTCASCHVKFGTDLEYRTHLESHLIPCEST
DESYEGAYTITKTFNCVFCRTEFKACFKPGQVTRRYACDACIVRLKAQEE
EKKILGKRRPELICDRCGKKYKYEGFLHRHLKTCQMPDKCKRKREIEITE
VSEVTFTEVVQSFNN*
BS04527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15710-PA | 265 | CG15710-PA | 1..265 | 1..265 | 1430 | 100 | Plus |
| CG3847-PA | 380 | CG3847-PA | 186..380 | 53..247 | 321 | 35.3 | Plus |
