Clone Sequence Records
BS04529.3prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-01
> BS04529.3prime
ATGGTCTAGAAAGCTTTCACTGCTCCATTTCCAGGCCGAAAGTGGCCCGC
ATCCGCTCGAGTGTGGCGGCGGGATATCCCCGCTCGAGCAGCTGCCTCTC
CGCCTGGGCAATCACATCCCGCATCGTGTCCAACATGACGGCGCTCTTCT
TCAGCTGCCCGCTGACGAATTTGTGCCGGAAGCGCAGCTTGGCCTTCTTG
ATCTTGTTGTTGTAGCGGGATTTGCGGCACGACTCGGCCCTCTGACGCTG
GGCATCCTTGACATCCGAACCAGAACCGGAACCTGATCCGGAACCCGATC
CGCGGCAATCCATAGCAAGCTCCGTTTTCAGCGGCGGCGGTGCACGGCGC
TCCACAACAATGGGATTCTCCAGGAGCATCTGGTCTACGTAGCGTTGCTC
CTCGTCGGCGTAGTGCATTTTGAGATGATGCAGCTGCTGGGACACCAGCT
CCTCGATCTGCTCCGGCTTCGATGATGTTGACGATGCTGTCGATAGTGCG
GGTGAACTGCTTCCGCGATACGGTGCGTATACGTGACCCATGGCCGCGTA
GCTCAGAGTGGGCAAGTAAAGATGACTTCGTTCCATGTCGACTGATAACT
BS04529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1641-PA | 570 | sisA-RA | 1..570 | 586..17 | 2825 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sisA-RA | 779 | CG1641-RA | 67..637 | 587..17 | 2840 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11321721..11322291 | 17..587 | 2840 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:23:20 has no hits.
BS04529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:01 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-PA | 1..570 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:15 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1641-PA | 1..570 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:18:55 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 62..637 | 17..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:03 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 62..637 | 17..596 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:03 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11321721..11322296 | 17..596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:18:55 Download gff for
BS04529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11215754..11216329 | 17..596 | 99 | | Plus |
BS04529.5prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-01
> BS04529.5prime
GAAGTTATCAGTCGACATGGAACGAAGTCATCTTTACTTGCCCACTCTGA
GCTACGCGGCCATGGGTCACGTATACGCACCGTATCGCGGAAGCAGTTCA
CCCGCACTATCGACAGCATCGTCAACATCATCGAAGCCGGAGCAGATCGA
GGAGCTGGTGTCCCAGCAGCTGCATCATCTCAAAATGCACTACGCCGACG
AGGAGCAACGCTACGTAGACCAGATGCTCCTGGAGAATCCCATTGTTGTG
GAGCGCCGTGCACCGCCGCCGCTGAAAACGGAGCTTGCTATGGATTGCCG
CGGATCGGGTTCCGGATCAGGTTCCGGTTCTGGTTCGGATGTCAAGGATG
CCCAGCGTCAGAGGGCCGAGTCGTGCCGCAAATCCCGCTACAACAACAAG
ATCAAGAAGGCCAAGCTGCGCTTCCGGCACAAATTCGTCAGCGGGCAGCT
GAAGAAGAGCGCCGTCATGTTGGACACGATGCGGGATGTGATTGCCCAGG
CGGAGAGGCAGCTGCTCGAGCGGGGATATCCCGCCGCCACACTCGAGCGG
ATGCGGGCCACTTTCGGCCTGGAAATGGAGCAGTGAAAGCTTTCTAGACC
BS04529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1641-PA | 570 | sisA-RA | 1..570 | 17..586 | 2825 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sisA-RA | 779 | CG1641-RA | 67..637 | 16..586 | 2840 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11321721..11322291 | 586..16 | 2840 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:28:17 has no hits.
BS04529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:02 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-PA | 1..570 | 17..586 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:16 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1641-PA | 1..570 | 17..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:20 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 62..637 | 7..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:54 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 62..637 | 7..586 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:54 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11321721..11322296 | 7..586 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:20 Download gff for
BS04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11215754..11216329 | 7..586 | 99 | | Minus |
BS04529.complete Sequence
602 bp assembled on 2008-10-21
GenBank Submission: KX793928
> BS04529.complete
GAAGTTATCAGTCGACATGGAACGAAGTCATCTTTACTTGCCCACTCTGA
GCTACGCGGCCATGGGTCACGTATACGCACCGTATCGCGGAAGCAGTTCA
CCCGCACTATCGACAGCATCGTCAACATCATCGAAGCCGGAGCAGATCGA
GGAGCTGGTGTCCCAGCAGCTGCATCATCTCAAAATGCACTACGCCGACG
AGGAGCAACGCTACGTAGACCAGATGCTCCTGGAGAATCCCATTGTTGTG
GAGCGCCGTGCACCGCCGCCGCTGAAAACGGAGCTTGCTATGGATTGCCG
CGGATCGGGTTCCGGATCAGGTTCCGGTTCTGGTTCGGATGTCAAGGATG
CCCAGCGTCAGAGGGCCGAGTCGTGCCGCAAATCCCGCTACAACAACAAG
ATCAAGAAGGCCAAGCTGCGCTTCCGGCACAAATTCGTCAGCGGGCAGCT
GAAGAAGAGCGCCGTCATGTTGGACACGATGCGGGATGTGATTGCCCAGG
CGGAGAGGCAGCTGCTCGAGCGGGGATATCCCGCCGCCACACTCGAGCGG
ATGCGGGCCACTTTCGGCCTGGAAATGGAGCAGTGAAAGCTTTCTAGACC
AT
BS04529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sisA-RA | 570 | CG1641-PA | 1..570 | 17..586 | 2835 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sisA-RA | 779 | CG1641-RA | 67..637 | 16..586 | 2840 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11321721..11322291 | 586..16 | 2840 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:51:19 has no hits.
BS04529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:55:00 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 51..626 | 7..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:55 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 68..636 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-21 15:48:57 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 57..625 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:10 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sisA-RA | 68..636 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:10 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11321722..11322290 | 17..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:55 Download gff for
BS04529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11215755..11216323 | 17..585 | 99 | | Minus |
BS04529.pep Sequence
Translation from 16 to 585
> BS04529.pep
MERSHLYLPTLSYAAMGHVYAPYRGSSSPALSTASSTSSKPEQIEELVSQ
QLHHLKMHYADEEQRYVDQMLLENPIVVERRAPPPLKTELAMDCRGSGSG
SGSGSGSDVKDAQRQRAESCRKSRYNNKIKKAKLRFRHKFVSGQLKKSAV
MLDTMRDVIAQAERQLLERGYPAATLERMRATFGLEMEQ*
BS04529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sisA-PA | 189 | CG1641-PA | 1..189 | 1..189 | 960 | 100 | Plus |
