Clone BS04531 Report

Search the DGRC for BS04531

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptFoxP-RD
Protein status:BS04531.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04531.3prime Sequence

942 bp (867 high quality bases) assembled on 2005-12-01

> BS04531.3prime
ATGGTCTAGAAAGCTTCTATTTGAGACCCACATACCCAATGTTCATGGCT
ACAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACC
AATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGA
CAGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGA
AGGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCG
GAAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTA
ACTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAA
GTAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATG
GATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATC
CCCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAG
CACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATT
TGTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGC
AAAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGA
GACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCG
ATCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTT
GAACCCGTGCCTGTGCTGTTGATCGATCGTCCAAACCATGTTCCGTATTC
AGATGCTTGACAAACGATGTGATGTCTTCCAAATCCATTTCGCAACCAGG
CCAACGGCATATGCCATGAGCAAATAACGGATGATAGTACTTCCGCATGG
CGAACTCATCGTGCATATAGCTGAAATCATTGTTGCACACCT

BS04531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 404..719 942..627 1580 100 Minus
CG16899-PA 1074 CG16899-RA 762..1074 329..17 1565 100 Minus
CG16899-PA 1074 CG16899-RA 717..762 451..406 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 2832 CG43067-RD 1650..2575 942..17 4630 100 Minus
FoxP-RC 3359 CG43067-RC 1650..2367 942..225 3590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9727408..9727619 17..228 1060 100 Plus
3R 32079331 3R 9728424..9728605 450..631 910 100 Plus
3R 32079331 3R 9728658..9728836 628..806 895 100 Plus
3R 32079331 3R 9728894..9729030 806..942 685 100 Plus
3R 32079331 3R 9727990..9728093 227..330 520 100 Plus
3R 32079331 3R 9728158..9728236 328..406 395 100 Plus
3R 32079331 3R 9728321..9728366 406..451 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:51:19 has no hits.

BS04531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:05 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 762..1074 17..329 100   Minus
CG16899-PA 404..719 627..942 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:20 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 404..719 627..942 100 == Minus
CG16899-PA 762..1074 17..329 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:57:42 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 414..1342 10..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:37 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1650..2578 10..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:37 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9727405..9727617 10..226 98 <- Plus
3R 9727990..9728091 227..328 100 <- Plus
3R 9728159..9728235 329..405 100 <- Plus
3R 9728321..9728365 406..450 100 <- Plus
3R 9728425..9728602 451..628 100 <- Plus
3R 9728659..9728836 629..806 100 <- Plus
3R 9728895..9729030 807..942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:57:42 Download gff for BS04531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5553712..5553813 227..328 100 <- Plus
arm_3R 5553881..5553957 329..405 100 <- Plus
arm_3R 5554043..5554087 406..450 100 <- Plus
arm_3R 5554147..5554324 451..628 100 <- Plus
arm_3R 5554381..5554558 629..806 100 <- Plus
arm_3R 5554617..5554752 807..942 100   Plus
arm_3R 5553127..5553339 10..226 98 <- Plus

BS04531.5prime Sequence

838 bp (787 high quality bases) assembled on 2005-12-01

> BS04531.5prime
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAAGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCA

BS04531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16899-PA 1074 CG16899-RA 1..719 17..735 3595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 1245..2068 15..838 4105 99.9 Plus
FoxP-RD 2832 CG43067-RD 1245..2068 15..838 4105 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9728894..9729435 556..15 2710 100 Minus
3R 32079331 3R 9728658..9728836 734..556 895 100 Minus
3R 32079331 3R 9728498..9728605 838..731 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:50:50 has no hits.

BS04531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:06 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 17..742 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:21 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16899-PA 1..725 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:22:33 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 9..831 15..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:28 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1245..2067 15..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:28 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9728659..9728836 556..733 100 <- Minus
3R 9728499..9728602 734..837 99 <- Minus
3R 9728895..9729435 15..555 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:22:33 Download gff for BS04531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5554221..5554324 734..837 99 <- Minus
arm_3R 5554381..5554558 556..733 100 <- Minus
arm_3R 5554617..5555157 15..555 100   Minus

BS04531.complete Sequence

1361 bp (1361 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634967

> BS04531.complete
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTAATTCC
ACCAACTTGTGCTCGATCAAAAAGAGAAACCACGACAAAAATACATTTTC
CATAAATGGGGGATTACCCTATATGCTTGAAAGAGCAGGTCTTGATGTGC
AACAGGAAATCCATCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGA
CCGCCTTTTACTTATGCTTCCCTCATAAGACAGGCTATAATTGACTCCCC
TGACAAGCAGTTAACCCTAAACGAAATCTACAACTGGTTCCAAAACACAT
TTTGCTACTTCCGGCGCAACGCAGCTACGTGGAAGAACGCAGTCCGGCAC
AATCTGTCCCTTCATAAGTGCTTTATGCGGGTTGAGAATGTGAAAGGAGC
AGTTTGGACTGTCGATGAGATTGAGTTTTACAAAAGACGACCGCAGCGCA
CTGCTGGCATTGGTAACAATCTAACCGGTGCTACCAATTCGCCGGACACT
AACTATTTTGTAGCCATGAACATTGGGTATGTGGGTCTCAAATAGAAGCT
TTCTAGACCAT

BS04531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 1329 CG43067-PD 1..1329 17..1345 6645 100 Plus
FoxP-RC 1563 CG43067-PC 1..1121 17..1137 5605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RD 2832 CG43067-RD 1245..2575 15..1345 6655 100 Plus
FoxP-RC 3359 CG43067-RC 1245..2367 15..1137 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9728894..9729435 556..15 2710 100 Minus
3R 32079331 3R 9727408..9727619 1345..1134 1060 100 Minus
3R 32079331 3R 9728424..9728605 912..731 910 100 Minus
3R 32079331 3R 9728658..9728836 734..556 895 100 Minus
3R 32079331 3R 9727990..9728093 1135..1032 520 100 Minus
3R 32079331 3R 9728158..9728236 1034..956 395 100 Minus
3R 32079331 3R 9728321..9728366 956..911 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:57 has no hits.

BS04531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:30 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 1..1329 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:29 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 9..1342 15..1352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:02 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 11..1333 17..1339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:30 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
CG16899-RB 9..1342 15..1352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:32 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RD 1247..2569 17..1339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:32 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9727414..9727617 1136..1339 100 <- Minus
3R 9727990..9728091 1034..1135 100 <- Minus
3R 9728159..9728235 957..1033 100 <- Minus
3R 9728321..9728365 912..956 100 <- Minus
3R 9728425..9728602 734..911 100 <- Minus
3R 9728659..9728836 556..733 100 <- Minus
3R 9728895..9729433 17..555 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:02 Download gff for BS04531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5553136..5553339 1136..1339 100 <- Minus
arm_3R 5553712..5553813 1034..1135 100 <- Minus
arm_3R 5553881..5553957 957..1033 100 <- Minus
arm_3R 5554043..5554087 912..956 100 <- Minus
arm_3R 5554147..5554324 734..911 100 <- Minus
arm_3R 5554381..5554558 556..733 100 <- Minus
arm_3R 5554617..5555155 17..555 100   Minus

BS04531.pep Sequence

Translation from 16 to 1344

> BS04531.pep
MHRIHDDEYSEDAKESDFKSSIQKEISVKSRHQISIPDICSDAVKNNCFP
PTGFLNNSITFASHVVKCSSPASSIDESSTAAQQHESNPHMHIQGQHMMA
PVPDLGFYNVPEFISEQEKLMFSDAERFLRSKDNEVCNNDFSYMHDEFAM
RKYYHPLFAHGICRWPGCEMDLEDITSFVKHLNTEHGLDDRSTAQARVQM
QVVSQLESHLQKERDRLQAMMHHLYLSKQLLSPTKIDRKDVPGREGKFCR
SPLTVNSIGRPIRQTNSPSPLNLPMVNSTNLCSIKKRNHDKNTFSINGGL
PYMLERAGLDVQQEIHRNREFYKNADVRPPFTYASLIRQAIIDSPDKQLT
LNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD
EIEFYKRRPQRTAGIGNNLTGATNSPDTNYFVAMNIGYVGLK*

BS04531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-PD 442 CG43067-PD 1..442 1..442 2367 100 Plus
FoxP-PC 520 CG43067-PC 1..408 1..408 2115 96.8 Plus
slp1-PA 322 CG16738-PA 59..197 266..400 211 34 Plus
croc-PA 508 CG5069-PA 51..147 301..400 200 40 Plus
fd96Cb-PA 271 CG11922-PA 11..94 326..404 187 42.9 Plus