Clone Sequence Records
BS04531.3prime Sequence
942 bp (867 high quality bases) assembled on 2005-12-01
> BS04531.3prime
ATGGTCTAGAAAGCTTCTATTTGAGACCCACATACCCAATGTTCATGGCT
ACAAAATAGTTAGTGTCCGGCGAATTGGTAGCACCGGTTAGATTGTTACC
AATGCCAGCAGTGCGCTGCGGTCGTCTTTTGTAAAACTCAATCTCATCGA
CAGTCCAAACTGCTCCTTTCACATTCTCAACCCGCATAAAGCACTTATGA
AGGGACAGATTGTGCCGGACTGCGTTCTTCCACGTAGCTGCGTTGCGCCG
GAAGTAGCAAAATGTGTTTTGGAACCAGTTGTAGATTTCGTTTAGGGTTA
ACTGCTTGTCAGGGGAGTCAATTATAGCCTGTCTTATGAGGGAAGCATAA
GTAAAAGGCGGTCGTACATCAGCATTCTTATAAAACTCTCTGTTTCGATG
GATTTCCTGTTGCACATCAAGACCTGCTCTTTCAAGCATATAGGGTAATC
CCCCATTTATGGAAAATGTATTTTTGTCGTGGTTTCTCTTTTTGATCGAG
CACAAGTTGGTGGAATTAACCATTGGAAGATTCAGAGGACTCGGTGAATT
TGTTTGTCGGATGGGTCGGCCTATGCTATTTACGGTAAGCGGACTCCGGC
AAAACTTTCCCTCTCTTCCGGGCACGTCCTTCCTGTCGATTTTGGTGGGA
GACAAAAGCTGCTTGGACAAATACAAGTGATGCATCATTGCCTGCAAGCG
ATCTCGTTCTTTTTGCAGGTGGGATTCCAGCTGGGAGACAACTTGCATTT
GAACCCGTGCCTGTGCTGTTGATCGATCGTCCAAACCATGTTCCGTATTC
AGATGCTTGACAAACGATGTGATGTCTTCCAAATCCATTTCGCAACCAGG
CCAACGGCATATGCCATGAGCAAATAACGGATGATAGTACTTCCGCATGG
CGAACTCATCGTGCATATAGCTGAAATCATTGTTGCACACCT
BS04531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 404..719 | 942..627 | 1580 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 762..1074 | 329..17 | 1565 | 100 | Minus |
CG16899-PA | 1074 | CG16899-RA | 717..762 | 451..406 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 2832 | CG43067-RD | 1650..2575 | 942..17 | 4630 | 100 | Minus |
FoxP-RC | 3359 | CG43067-RC | 1650..2367 | 942..225 | 3590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9727408..9727619 | 17..228 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 9728424..9728605 | 450..631 | 910 | 100 | Plus |
3R | 32079331 | 3R | 9728658..9728836 | 628..806 | 895 | 100 | Plus |
3R | 32079331 | 3R | 9728894..9729030 | 806..942 | 685 | 100 | Plus |
3R | 32079331 | 3R | 9727990..9728093 | 227..330 | 520 | 100 | Plus |
3R | 32079331 | 3R | 9728158..9728236 | 328..406 | 395 | 100 | Plus |
3R | 32079331 | 3R | 9728321..9728366 | 406..451 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:51:19 has no hits.
BS04531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:05 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 762..1074 | 17..329 | 100 | | Minus |
CG16899-PA | 404..719 | 627..942 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:20 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 404..719 | 627..942 | 100 | == | Minus |
CG16899-PA | 762..1074 | 17..329 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:57:42 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 414..1342 | 10..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:37 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1650..2578 | 10..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:37 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9727405..9727617 | 10..226 | 98 | <- | Plus |
3R | 9727990..9728091 | 227..328 | 100 | <- | Plus |
3R | 9728159..9728235 | 329..405 | 100 | <- | Plus |
3R | 9728321..9728365 | 406..450 | 100 | <- | Plus |
3R | 9728425..9728602 | 451..628 | 100 | <- | Plus |
3R | 9728659..9728836 | 629..806 | 100 | <- | Plus |
3R | 9728895..9729030 | 807..942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:57:42 Download gff for
BS04531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5553712..5553813 | 227..328 | 100 | <- | Plus |
arm_3R | 5553881..5553957 | 329..405 | 100 | <- | Plus |
arm_3R | 5554043..5554087 | 406..450 | 100 | <- | Plus |
arm_3R | 5554147..5554324 | 451..628 | 100 | <- | Plus |
arm_3R | 5554381..5554558 | 629..806 | 100 | <- | Plus |
arm_3R | 5554617..5554752 | 807..942 | 100 | | Plus |
arm_3R | 5553127..5553339 | 10..226 | 98 | <- | Plus |
BS04531.5prime Sequence
838 bp (787 high quality bases) assembled on 2005-12-01
> BS04531.5prime
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAAGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCA
BS04531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16899-PA | 1074 | CG16899-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 1245..2068 | 15..838 | 4105 | 99.9 | Plus |
FoxP-RD | 2832 | CG43067-RD | 1245..2068 | 15..838 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9728894..9729435 | 556..15 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 9728658..9728836 | 734..556 | 895 | 100 | Minus |
3R | 32079331 | 3R | 9728498..9728605 | 838..731 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:50:50 has no hits.
BS04531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:06 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:21 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-PA | 1..725 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:22:33 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 9..831 | 15..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:28 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1245..2067 | 15..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:28 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9728659..9728836 | 556..733 | 100 | <- | Minus |
3R | 9728499..9728602 | 734..837 | 99 | <- | Minus |
3R | 9728895..9729435 | 15..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:22:33 Download gff for
BS04531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5554221..5554324 | 734..837 | 99 | <- | Minus |
arm_3R | 5554381..5554558 | 556..733 | 100 | <- | Minus |
arm_3R | 5554617..5555157 | 15..555 | 100 | | Minus |
BS04531.complete Sequence
1361 bp (1361 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634967
> BS04531.complete
GAAGTTATCAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGG
ATGCCAAGGAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTG
AAGTCGAGACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAA
GAACAATTGTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTG
CCTCACATGTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCC
TCAACGGCGGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGG
TCAGCATATGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCG
AGTTCATATCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTC
TTGCGGTCGAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCA
CGATGAGTTCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCA
TATGCCGTTGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTT
GTCAAGCATCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACA
GGCACGGGTTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAA
AAGAACGAGATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAG
CAGCTTTTGTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGA
GGGAAAGTTTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCA
TCCGACAAACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTAATTCC
ACCAACTTGTGCTCGATCAAAAAGAGAAACCACGACAAAAATACATTTTC
CATAAATGGGGGATTACCCTATATGCTTGAAAGAGCAGGTCTTGATGTGC
AACAGGAAATCCATCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGA
CCGCCTTTTACTTATGCTTCCCTCATAAGACAGGCTATAATTGACTCCCC
TGACAAGCAGTTAACCCTAAACGAAATCTACAACTGGTTCCAAAACACAT
TTTGCTACTTCCGGCGCAACGCAGCTACGTGGAAGAACGCAGTCCGGCAC
AATCTGTCCCTTCATAAGTGCTTTATGCGGGTTGAGAATGTGAAAGGAGC
AGTTTGGACTGTCGATGAGATTGAGTTTTACAAAAGACGACCGCAGCGCA
CTGCTGGCATTGGTAACAATCTAACCGGTGCTACCAATTCGCCGGACACT
AACTATTTTGTAGCCATGAACATTGGGTATGTGGGTCTCAAATAGAAGCT
TTCTAGACCAT
BS04531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 1329 | CG43067-PD | 1..1329 | 17..1345 | 6645 | 100 | Plus |
FoxP-RC | 1563 | CG43067-PC | 1..1121 | 17..1137 | 5605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RD | 2832 | CG43067-RD | 1245..2575 | 15..1345 | 6655 | 100 | Plus |
FoxP-RC | 3359 | CG43067-RC | 1245..2367 | 15..1137 | 5615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9728894..9729435 | 556..15 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 9727408..9727619 | 1345..1134 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 9728424..9728605 | 912..731 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9728658..9728836 | 734..556 | 895 | 100 | Minus |
3R | 32079331 | 3R | 9727990..9728093 | 1135..1032 | 520 | 100 | Minus |
3R | 32079331 | 3R | 9728158..9728236 | 1034..956 | 395 | 100 | Minus |
3R | 32079331 | 3R | 9728321..9728366 | 956..911 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:57 has no hits.
BS04531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:30 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:29 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 9..1342 | 15..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:02 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 11..1333 | 17..1339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:30 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16899-RB | 9..1342 | 15..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:32 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RD | 1247..2569 | 17..1339 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:32 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9727414..9727617 | 1136..1339 | 100 | <- | Minus |
3R | 9727990..9728091 | 1034..1135 | 100 | <- | Minus |
3R | 9728159..9728235 | 957..1033 | 100 | <- | Minus |
3R | 9728321..9728365 | 912..956 | 100 | <- | Minus |
3R | 9728425..9728602 | 734..911 | 100 | <- | Minus |
3R | 9728659..9728836 | 556..733 | 100 | <- | Minus |
3R | 9728895..9729433 | 17..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:02 Download gff for
BS04531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5553136..5553339 | 1136..1339 | 100 | <- | Minus |
arm_3R | 5553712..5553813 | 1034..1135 | 100 | <- | Minus |
arm_3R | 5553881..5553957 | 957..1033 | 100 | <- | Minus |
arm_3R | 5554043..5554087 | 912..956 | 100 | <- | Minus |
arm_3R | 5554147..5554324 | 734..911 | 100 | <- | Minus |
arm_3R | 5554381..5554558 | 556..733 | 100 | <- | Minus |
arm_3R | 5554617..5555155 | 17..555 | 100 | | Minus |
BS04531.pep Sequence
Translation from 16 to 1344
> BS04531.pep
MHRIHDDEYSEDAKESDFKSSIQKEISVKSRHQISIPDICSDAVKNNCFP
PTGFLNNSITFASHVVKCSSPASSIDESSTAAQQHESNPHMHIQGQHMMA
PVPDLGFYNVPEFISEQEKLMFSDAERFLRSKDNEVCNNDFSYMHDEFAM
RKYYHPLFAHGICRWPGCEMDLEDITSFVKHLNTEHGLDDRSTAQARVQM
QVVSQLESHLQKERDRLQAMMHHLYLSKQLLSPTKIDRKDVPGREGKFCR
SPLTVNSIGRPIRQTNSPSPLNLPMVNSTNLCSIKKRNHDKNTFSINGGL
PYMLERAGLDVQQEIHRNREFYKNADVRPPFTYASLIRQAIIDSPDKQLT
LNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD
EIEFYKRRPQRTAGIGNNLTGATNSPDTNYFVAMNIGYVGLK*
BS04531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-PD | 442 | CG43067-PD | 1..442 | 1..442 | 2367 | 100 | Plus |
FoxP-PC | 520 | CG43067-PC | 1..408 | 1..408 | 2115 | 96.8 | Plus |
slp1-PA | 322 | CG16738-PA | 59..197 | 266..400 | 211 | 34 | Plus |
croc-PA | 508 | CG5069-PA | 51..147 | 301..400 | 200 | 40 | Plus |
fd96Cb-PA | 271 | CG11922-PA | 11..94 | 326..404 | 187 | 42.9 | Plus |