Clone BS04536 Report

Search the DGRC for BS04536

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG17198-RA
Protein status:BS04536.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04536.3prime Sequence

840 bp (765 high quality bases) assembled on 2005-12-01

> BS04536.3prime
ATGGTCTAGAAAGCTTCTAGACGGCACGCTTCGATTTCCATCGGGTGCCA
TTGTGGGGCAGGGGACTTTTGATATTTGGCGATAGGCAAGTCCATAATCG
CCGACTTCCCAGGATCAGGGTCAAATTATTCCCTAATCCAAGGTCATAGG
TTCGATCAGAATAATCGTGCATTACTGAGTTTTTGATGACCGTCACTACT
TGGGTGCAAAACAGTGCTGCTGGAAAGAGAACGGCGAATATGTTGACACC
TAAGACACTGACTATTCGATAGAATATCACTAATTCTTTTCTACCAGGAT
TCATGTAAGCATTAAAAATAATGTAATTGGCTTTGACTAAATCAAAAAAT
CCAACACCGTGCTTATGGGCCAACATGAAGTTATCAAATAAGGCCACTGC
GCTACCGATGGCCGCGTAAAATGAGAACCATATGAAATATCGCTGATTAT
TGTGTCCCACGCAGTTGCCCACAAAATTGCAGTGGTGATCGCGTTTCAGA
ATGCACGCATCACAGATGTTGCAGTGCCAGGACCTTGGCGGTACATTCCT
TTGGCATATTTTGCAAAAATGCCACAGGTGCTCTTCACCTTTCATTGGCT
GCTGCATTTGCGGCGGCAAAGAGTCCACAGTGTTCAACGTCGTGACGCAC
AGCCTTAAGTTTTCCAGAATATTGTAGACAATCCAAGTGGTGACTAAAAA
ATGAACCGCCTGTCCAAACAATCCCAAAAACTGTGGCATTACGTAGAAAG
CTTCGAAGAAGTAGAAAAACAAGATTATGCAGACATTTATGGATACTCCC
ATGATATCTGTCCAGGATTTGATGGCCCCCACGCGTCTTG

BS04536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17198-PA 900 CG17198-RA 77..900 840..17 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 1037..1860 840..17 4120 100 Minus
CG17198-RB 1958 CG17198-RB 1037..1860 840..17 4120 100 Minus
CG17198-RA 1066 CG17198-RA 145..968 840..17 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25773432..25774255 17..840 4120 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:27:00 has no hits.

BS04536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:14 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-PA 77..900 17..840 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:31 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-PA 77..900 17..840 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:55 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 145..968 17..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:50 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 145..968 17..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:50 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25773432..25774255 17..840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:55 Download gff for BS04536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21599154..21599977 17..840 100   Plus

BS04536.5prime Sequence

832 bp (755 high quality bases) assembled on 2005-12-01

> BS04536.5prime
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCCTGATCCTGGGAAGTCG

BS04536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17198-PA 900 CG17198-RA 1..799 17..815 3995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 961..1775 17..832 4055 99.9 Plus
CG17198-RB 1958 CG17198-RB 961..1775 17..832 4055 99.9 Plus
CG17198-RA 1066 CG17198-RA 69..883 17..832 4055 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25773517..25774331 832..17 4030 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 09:03:42 has no hits.

BS04536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:15 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-PA 1..815 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:33 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-PA 1..815 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:51 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..883 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:01:37 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..883 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:01:37 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25773517..25774331 17..832 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:51 Download gff for BS04536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21599239..21600053 17..832 99   Minus

BS04536.complete Sequence

932 bp (932 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634968

> BS04536.complete
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCTGATCCTGGGAAGTCGGCGATTATGGACTTGCCTA
TCGCCAAATATCAAAAGTCCCCTGCCCCACAATGGCACCCGATGGAAATC
GAAGCGTGCCGTCTAGAAGCTTTCTAGACCAT

BS04536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17198-RB 900 CG17198-PB 1..900 17..916 4500 100 Plus
CG17198-RA 900 CG17198-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 961..1860 17..916 4500 100 Plus
CG17198-RB 1958 CG17198-RB 961..1860 17..916 4500 100 Plus
CG17198-RA 1066 CG17198-RA 69..968 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25773432..25774331 916..17 4500 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:40:56 has no hits.

BS04536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:34 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:33 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..968 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:33:04 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..968 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:34 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..968 17..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:06 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RA 69..968 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:06 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25773432..25774331 17..916 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:33:04 Download gff for BS04536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21599154..21600053 17..916 100   Minus

BS04536.pep Sequence

Translation from 16 to 915

> BS04536.pep
MKISHVFVQLRGIMQSQVQMQTINIPRRVGAIKSWTDIMGVSINVCIILF
FYFFEAFYVMPQFLGLFGQAVHFLVTTWIVYNILENLRLCVTTLNTVDSL
PPQMQQPMKGEEHLWHFCKICQRNVPPRSWHCNICDACILKRDHHCNFVG
NCVGHNNQRYFIWFSFYAAIGSAVALFDNFMLAHKHGVGFFDLVKANYII
FNAYMNPGRKELVIFYRIVSVLGVNIFAVLFPAALFCTQVVTVIKNSVMH
DYSDRTYDLGLGNNLTLILGSRRLWTCLSPNIKSPLPHNGTRWKSKRAV*

BS04536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17198-PB 299 CG17198-PB 1..299 1..299 1622 100 Plus
CG17198-PA 299 CG17198-PA 1..299 1..299 1622 100 Plus
CG17196-PA 276 CG17196-PA 36..274 49..297 554 43.4 Plus
CG17197-PB 290 CG17197-PB 36..275 49..297 546 41 Plus
CG17196-PC 253 CG17196-PC 21..251 57..297 538 44 Plus