Clone Sequence Records
BS04536.3prime Sequence
840 bp (765 high quality bases) assembled on 2005-12-01
> BS04536.3prime
ATGGTCTAGAAAGCTTCTAGACGGCACGCTTCGATTTCCATCGGGTGCCA
TTGTGGGGCAGGGGACTTTTGATATTTGGCGATAGGCAAGTCCATAATCG
CCGACTTCCCAGGATCAGGGTCAAATTATTCCCTAATCCAAGGTCATAGG
TTCGATCAGAATAATCGTGCATTACTGAGTTTTTGATGACCGTCACTACT
TGGGTGCAAAACAGTGCTGCTGGAAAGAGAACGGCGAATATGTTGACACC
TAAGACACTGACTATTCGATAGAATATCACTAATTCTTTTCTACCAGGAT
TCATGTAAGCATTAAAAATAATGTAATTGGCTTTGACTAAATCAAAAAAT
CCAACACCGTGCTTATGGGCCAACATGAAGTTATCAAATAAGGCCACTGC
GCTACCGATGGCCGCGTAAAATGAGAACCATATGAAATATCGCTGATTAT
TGTGTCCCACGCAGTTGCCCACAAAATTGCAGTGGTGATCGCGTTTCAGA
ATGCACGCATCACAGATGTTGCAGTGCCAGGACCTTGGCGGTACATTCCT
TTGGCATATTTTGCAAAAATGCCACAGGTGCTCTTCACCTTTCATTGGCT
GCTGCATTTGCGGCGGCAAAGAGTCCACAGTGTTCAACGTCGTGACGCAC
AGCCTTAAGTTTTCCAGAATATTGTAGACAATCCAAGTGGTGACTAAAAA
ATGAACCGCCTGTCCAAACAATCCCAAAAACTGTGGCATTACGTAGAAAG
CTTCGAAGAAGTAGAAAAACAAGATTATGCAGACATTTATGGATACTCCC
ATGATATCTGTCCAGGATTTGATGGCCCCCACGCGTCTTG
BS04536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17198-PA | 900 | CG17198-RA | 77..900 | 840..17 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 1037..1860 | 840..17 | 4120 | 100 | Minus |
CG17198-RB | 1958 | CG17198-RB | 1037..1860 | 840..17 | 4120 | 100 | Minus |
CG17198-RA | 1066 | CG17198-RA | 145..968 | 840..17 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25773432..25774255 | 17..840 | 4120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:27:00 has no hits.
BS04536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:14 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-PA | 77..900 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:31 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-PA | 77..900 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:55 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 145..968 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:50 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 145..968 | 17..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:50 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25773432..25774255 | 17..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:55 Download gff for
BS04536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21599154..21599977 | 17..840 | 100 | | Plus |
BS04536.5prime Sequence
832 bp (755 high quality bases) assembled on 2005-12-01
> BS04536.5prime
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCCTGATCCTGGGAAGTCG
BS04536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17198-PA | 900 | CG17198-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 961..1775 | 17..832 | 4055 | 99.9 | Plus |
CG17198-RB | 1958 | CG17198-RB | 961..1775 | 17..832 | 4055 | 99.9 | Plus |
CG17198-RA | 1066 | CG17198-RA | 69..883 | 17..832 | 4055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25773517..25774331 | 832..17 | 4030 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:03:42 has no hits.
BS04536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:15 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-PA | 1..815 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:33 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-PA | 1..815 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:51 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..883 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:01:37 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..883 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:01:37 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25773517..25774331 | 17..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:51 Download gff for
BS04536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21599239..21600053 | 17..832 | 99 | | Minus |
BS04536.complete Sequence
932 bp (932 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634968
> BS04536.complete
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCTGATCCTGGGAAGTCGGCGATTATGGACTTGCCTA
TCGCCAAATATCAAAAGTCCCCTGCCCCACAATGGCACCCGATGGAAATC
GAAGCGTGCCGTCTAGAAGCTTTCTAGACCAT
BS04536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17198-RB | 900 | CG17198-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG17198-RA | 900 | CG17198-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 961..1860 | 17..916 | 4500 | 100 | Plus |
CG17198-RB | 1958 | CG17198-RB | 961..1860 | 17..916 | 4500 | 100 | Plus |
CG17198-RA | 1066 | CG17198-RA | 69..968 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25773432..25774331 | 916..17 | 4500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:56 has no hits.
BS04536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:34 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:33 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..968 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:33:04 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..968 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:34 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..968 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:06 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RA | 69..968 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:06 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25773432..25774331 | 17..916 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:33:04 Download gff for
BS04536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21599154..21600053 | 17..916 | 100 | | Minus |
BS04536.pep Sequence
Translation from 16 to 915
> BS04536.pep
MKISHVFVQLRGIMQSQVQMQTINIPRRVGAIKSWTDIMGVSINVCIILF
FYFFEAFYVMPQFLGLFGQAVHFLVTTWIVYNILENLRLCVTTLNTVDSL
PPQMQQPMKGEEHLWHFCKICQRNVPPRSWHCNICDACILKRDHHCNFVG
NCVGHNNQRYFIWFSFYAAIGSAVALFDNFMLAHKHGVGFFDLVKANYII
FNAYMNPGRKELVIFYRIVSVLGVNIFAVLFPAALFCTQVVTVIKNSVMH
DYSDRTYDLGLGNNLTLILGSRRLWTCLSPNIKSPLPHNGTRWKSKRAV*
BS04536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17198-PB | 299 | CG17198-PB | 1..299 | 1..299 | 1622 | 100 | Plus |
CG17198-PA | 299 | CG17198-PA | 1..299 | 1..299 | 1622 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 36..274 | 49..297 | 554 | 43.4 | Plus |
CG17197-PB | 290 | CG17197-PB | 36..275 | 49..297 | 546 | 41 | Plus |
CG17196-PC | 253 | CG17196-PC | 21..251 | 57..297 | 538 | 44 | Plus |