Clone BS04538 Report

Search the DGRC for BS04538

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG17328-RA
Protein status:BS04538.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04538.3prime Sequence

913 bp (811 high quality bases) assembled on 2005-12-01

> BS04538.3prime
ATGGTCTAGAAAGCTTCTAGTAATGTAGTCTTTGTGCCGCCGTGTGGTGC
AGCATAGTGTAACGCCCTTCACTTGGCGTTGGCGGTGGAGGCGGCGGCGG
TGCCAACATGTGAGCCATTGCCGCCATTCCCATTTGTGTGGCGGGATTCG
GGGGGCCGAGATGATGCAGTGCATCGTGATGGTAGTGATGCGACATAGGT
GGTGCAGGAGGCAACGGCAAATTCAGTAGATTATTATTCGCCGCATGTGT
GCGAAAATGTAGACTTAGGCTGTCCGCCGTATCAAATGCCTTGTCGCAAT
CCGGACACTTGAAGTGGGCGTGATCGAGGGTGTCCAGACCCACGGGATCC
GTGTCTATAGCCTCATCATCATCATCGTCCACTATATCATGGTTTGTACT
GGACTCCAGAGGATGAAGCTTCAATTTATGAGTCCGCATATCTCTTCGCC
TGCTGAAAGCCTTGCCGCAGACATCGCAGTGATGGTTTTTGATGCCCGTA
TGGGTTATCATGTGCTTGGAGAGATCACCGGCGGTGTAGAAACCTTTCTG
ACATAGCGAGCATACCTGATCCCGCACTCCTAAATGAATCTTCTGGTGCG
CCTGGAAATTGCCCAACGCGGAAAACTGCTTGGAGCAGATCTCACACTGA
AAAGGCTTGTCGCCCGTGTGCGTTCTTTCGTGGACTTTAAGATTGTACTT
TTGTGCGAATCTCTGGATACAAAAGCTGCATTGGTAGGGTTTCTCGCCGG
TATGTGTTCTTATATGCTGTGTTAATTGGGCAATGCACTTAAAGCTTTTG
TGGCACTCGTAGCAGGTGTGGGGCATCTTTGGCACAGGTTTGGGCCCCCG
TTTTTTGTGCTCTTCTGGCGGCTTCCTTTGATAGCGCGACCGCCTCTTGC
TCACTTTGGCATC

BS04538.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 1242 CG17328-RA 346..1238 913..21 4165 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RB 1346 CG17328-RB 293..1190 913..16 4295 98.6 Minus
CG17328-RA 1496 CG17328-RA 443..1340 913..16 4295 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300712..16301609 913..16 4295 98.6 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:03 has no hits.

BS04538.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:16 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 346..1242 17..913 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:34 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 346..1242 17..913 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:07 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 443..1340 16..913 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:58 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 443..1340 16..913 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:58 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16300712..16301609 16..913 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:07 Download gff for BS04538.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300712..16301609 16..913 98   Minus

BS04538.5prime Sequence

964 bp (724 high quality bases) assembled on 2005-12-01

> BS04538.5prime
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCCCGCCCACTTC

BS04538.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 1242 CG17328-RA 1..948 17..964 4515 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1496 CG17328-RA 96..1045 15..964 4615 99.1 Plus
CG17328-RB 1346 CG17328-RB 64..895 133..964 3980 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300493..16301314 143..964 3975 98.9 Plus
2L 23513712 2L 16300309..16300438 15..144 650 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:39:35 has no hits.

BS04538.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:17 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:35 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:00 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 96..1045 15..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:11 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 96..1045 15..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:11 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16300309..16300436 15..142 100 -> Plus
2L 16300493..16301314 143..964 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:00 Download gff for BS04538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300309..16300436 15..142 100 -> Plus
arm_2L 16300493..16301314 143..964 98   Plus

BS04538.complete Sequence

1274 bp (1274 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634969

> BS04538.complete
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCACGCCCACTTCAAGTGTCCGGATTGCGACAAGGCATTTGATACGGCG
GACAGCCTAAGTCTACATTTTCGCACACATGCGGCGAATAATAATCTACT
GAATTTGCCGTTGCCTCCTGCACCACCTATGTCGCATCACTACCATCACG
ATGCACTGCATCATCTCGGCCCCCCGAATCCCGCCACACAAATGGGAATG
GCGGCAATGGCTCACATGTTGGCACCGCCGCCGCCTCCACCGCCAACGCC
AAGTGAAGGGCGTTACACTATGCTGCACCACACGGCGGCACAAAGACTAC
ATTACTAGAAGCTTTCTAGACCAT

BS04538.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1242 CG17328-PA 1..1242 17..1258 6015 99 Plus
CG17328-RB 1149 CG17328-PB 24..1149 133..1258 5390 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-RA 1496 CG17328-RA 96..1340 15..1259 6030 99 Plus
CG17328-RB 1346 CG17328-RB 64..1190 133..1259 5395 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16300493..16301609 143..1259 5390 98.8 Plus
2L 23513712 2L 16300309..16300438 15..144 650 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:34:34 has no hits.

BS04538.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:35 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 1..1242 17..1258 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:35 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 57..1301 15..1259 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:10 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 98..1339 17..1258 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:35 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 57..1301 15..1259 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:16 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
CG17328-RA 98..1339 17..1258 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:16 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16300311..16300436 17..142 100 -> Plus
2L 16300493..16301608 143..1258 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:10 Download gff for BS04538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16300311..16300436 17..142 100 -> Plus
arm_2L 16300493..16301608 143..1258 98   Plus

BS04538.pep Sequence

Translation from 16 to 1257

> BS04538.pep
MDYNIHKICRVCLEELHPVTSIYSTDFAMMPSVMLMQCAKIRVFKTDGLP
SVICNNCIYRLGVAFHFKQECENSDLRLRQYLGILESWRQDAATNTDFVE
KPLLPQRDSDEEEPVDAKVSKRRSRYQRKPPEEHKKRGPKPVPKMPHTCY
ECHKSFKCIAQLTQHIRTHTGEKPYQCSFCIQRFAQKYNLKVHERTHTGD
KPFQCEICSKQFSALGNFQAHQKIHLGVRDQVCSLCQKGFYTAGDLSKHM
ITHTGIKNHHCDVCGKAFSRRRDMRTHKLKLHPLESSTNHDIVDDDDDEA
IDTDPVGLDTLDHAHFKCPDCDKAFDTADSLSLHFRTHAANNNLLNLPLP
PAPPMSHHYHHDALHHLGPPNPATQMGMAAMAHMLAPPPPPPPTPSEGRY
TMLHHTAAQRLHY*

BS04538.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17328-PA 413 CG17328-PA 1..413 1..413 2297 100 Plus
CG17328-PB 382 CG17328-PB 9..382 40..413 2078 99.5 Plus
Kr-h1-PA 791 CG45074-PA 216..410 146..339 359 36.2 Plus
Kr-h1-PB 845 CG45074-PB 270..464 146..339 359 36.2 Plus
CG15436-PA 346 CG15436-PA 3..318 7..340 344 27.7 Plus
Kr-h1-PA 791 CG45074-PA 213..353 171..338 271 34.7 Plus
Kr-h1-PB 845 CG45074-PB 267..407 171..338 271 34.7 Plus