Clone Sequence Records
BS04538.3prime Sequence
913 bp (811 high quality bases) assembled on 2005-12-01
> BS04538.3prime
ATGGTCTAGAAAGCTTCTAGTAATGTAGTCTTTGTGCCGCCGTGTGGTGC
AGCATAGTGTAACGCCCTTCACTTGGCGTTGGCGGTGGAGGCGGCGGCGG
TGCCAACATGTGAGCCATTGCCGCCATTCCCATTTGTGTGGCGGGATTCG
GGGGGCCGAGATGATGCAGTGCATCGTGATGGTAGTGATGCGACATAGGT
GGTGCAGGAGGCAACGGCAAATTCAGTAGATTATTATTCGCCGCATGTGT
GCGAAAATGTAGACTTAGGCTGTCCGCCGTATCAAATGCCTTGTCGCAAT
CCGGACACTTGAAGTGGGCGTGATCGAGGGTGTCCAGACCCACGGGATCC
GTGTCTATAGCCTCATCATCATCATCGTCCACTATATCATGGTTTGTACT
GGACTCCAGAGGATGAAGCTTCAATTTATGAGTCCGCATATCTCTTCGCC
TGCTGAAAGCCTTGCCGCAGACATCGCAGTGATGGTTTTTGATGCCCGTA
TGGGTTATCATGTGCTTGGAGAGATCACCGGCGGTGTAGAAACCTTTCTG
ACATAGCGAGCATACCTGATCCCGCACTCCTAAATGAATCTTCTGGTGCG
CCTGGAAATTGCCCAACGCGGAAAACTGCTTGGAGCAGATCTCACACTGA
AAAGGCTTGTCGCCCGTGTGCGTTCTTTCGTGGACTTTAAGATTGTACTT
TTGTGCGAATCTCTGGATACAAAAGCTGCATTGGTAGGGTTTCTCGCCGG
TATGTGTTCTTATATGCTGTGTTAATTGGGCAATGCACTTAAAGCTTTTG
TGGCACTCGTAGCAGGTGTGGGGCATCTTTGGCACAGGTTTGGGCCCCCG
TTTTTTGTGCTCTTCTGGCGGCTTCCTTTGATAGCGCGACCGCCTCTTGC
TCACTTTGGCATC
BS04538.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 1242 | CG17328-RA | 346..1238 | 913..21 | 4165 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RB | 1346 | CG17328-RB | 293..1190 | 913..16 | 4295 | 98.6 | Minus |
CG17328-RA | 1496 | CG17328-RA | 443..1340 | 913..16 | 4295 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300712..16301609 | 913..16 | 4295 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:03 has no hits.
BS04538.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:16 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 346..1242 | 17..913 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:34 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 346..1242 | 17..913 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:07 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 443..1340 | 16..913 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:58 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 443..1340 | 16..913 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:58 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300712..16301609 | 16..913 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:07 Download gff for
BS04538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300712..16301609 | 16..913 | 98 | | Minus |
BS04538.5prime Sequence
964 bp (724 high quality bases) assembled on 2005-12-01
> BS04538.5prime
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCCCGCCCACTTC
BS04538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 1242 | CG17328-RA | 1..948 | 17..964 | 4515 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1496 | CG17328-RA | 96..1045 | 15..964 | 4615 | 99.1 | Plus |
CG17328-RB | 1346 | CG17328-RB | 64..895 | 133..964 | 3980 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300493..16301314 | 143..964 | 3975 | 98.9 | Plus |
2L | 23513712 | 2L | 16300309..16300438 | 15..144 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:39:35 has no hits.
BS04538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:17 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:35 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:00 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 96..1045 | 15..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:11 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 96..1045 | 15..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:11 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300309..16300436 | 15..142 | 100 | -> | Plus |
2L | 16300493..16301314 | 143..964 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:00 Download gff for
BS04538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300309..16300436 | 15..142 | 100 | -> | Plus |
arm_2L | 16300493..16301314 | 143..964 | 98 | | Plus |
BS04538.complete Sequence
1274 bp (1274 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634969
> BS04538.complete
GAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAGAGTTT
GCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACTTTGCT
ATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTTTTTAA
AACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCGGCTGG
GGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCCGACTG
CGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCCACCAA
TACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGATGAAG
AGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATCAAAGG
AAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCAAAGAT
GCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGCCCAAT
TAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAATGCAGC
TTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCACGAAAG
AACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAAGCAGT
TTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAGGAGTG
CGGGATCAGGTATGCTCGCTATGTCAGAAAGGTTTCTACACCGCCGGTGA
TCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCACTGCG
ATGTCTGCGGCAAGGCTTTCAGCAGGCGAAGAGATATGCGGACTCATAAA
TTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGACGA
TGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCCTCG
ATCACGCCCACTTCAAGTGTCCGGATTGCGACAAGGCATTTGATACGGCG
GACAGCCTAAGTCTACATTTTCGCACACATGCGGCGAATAATAATCTACT
GAATTTGCCGTTGCCTCCTGCACCACCTATGTCGCATCACTACCATCACG
ATGCACTGCATCATCTCGGCCCCCCGAATCCCGCCACACAAATGGGAATG
GCGGCAATGGCTCACATGTTGGCACCGCCGCCGCCTCCACCGCCAACGCC
AAGTGAAGGGCGTTACACTATGCTGCACCACACGGCGGCACAAAGACTAC
ATTACTAGAAGCTTTCTAGACCAT
BS04538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1242 | CG17328-PA | 1..1242 | 17..1258 | 6015 | 99 | Plus |
CG17328-RB | 1149 | CG17328-PB | 24..1149 | 133..1258 | 5390 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-RA | 1496 | CG17328-RA | 96..1340 | 15..1259 | 6030 | 99 | Plus |
CG17328-RB | 1346 | CG17328-RB | 64..1190 | 133..1259 | 5395 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16300493..16301609 | 143..1259 | 5390 | 98.8 | Plus |
2L | 23513712 | 2L | 16300309..16300438 | 15..144 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:34:34 has no hits.
BS04538.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:35 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 1..1242 | 17..1258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:35 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 57..1301 | 15..1259 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:10 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 98..1339 | 17..1258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:35 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 57..1301 | 15..1259 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:16 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17328-RA | 98..1339 | 17..1258 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:16 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16300311..16300436 | 17..142 | 100 | -> | Plus |
2L | 16300493..16301608 | 143..1258 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:10 Download gff for
BS04538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16300311..16300436 | 17..142 | 100 | -> | Plus |
arm_2L | 16300493..16301608 | 143..1258 | 98 | | Plus |
BS04538.pep Sequence
Translation from 16 to 1257
> BS04538.pep
MDYNIHKICRVCLEELHPVTSIYSTDFAMMPSVMLMQCAKIRVFKTDGLP
SVICNNCIYRLGVAFHFKQECENSDLRLRQYLGILESWRQDAATNTDFVE
KPLLPQRDSDEEEPVDAKVSKRRSRYQRKPPEEHKKRGPKPVPKMPHTCY
ECHKSFKCIAQLTQHIRTHTGEKPYQCSFCIQRFAQKYNLKVHERTHTGD
KPFQCEICSKQFSALGNFQAHQKIHLGVRDQVCSLCQKGFYTAGDLSKHM
ITHTGIKNHHCDVCGKAFSRRRDMRTHKLKLHPLESSTNHDIVDDDDDEA
IDTDPVGLDTLDHAHFKCPDCDKAFDTADSLSLHFRTHAANNNLLNLPLP
PAPPMSHHYHHDALHHLGPPNPATQMGMAAMAHMLAPPPPPPPTPSEGRY
TMLHHTAAQRLHY*
BS04538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17328-PA | 413 | CG17328-PA | 1..413 | 1..413 | 2297 | 100 | Plus |
CG17328-PB | 382 | CG17328-PB | 9..382 | 40..413 | 2078 | 99.5 | Plus |
Kr-h1-PA | 791 | CG45074-PA | 216..410 | 146..339 | 359 | 36.2 | Plus |
Kr-h1-PB | 845 | CG45074-PB | 270..464 | 146..339 | 359 | 36.2 | Plus |
CG15436-PA | 346 | CG15436-PA | 3..318 | 7..340 | 344 | 27.7 | Plus |
Kr-h1-PA | 791 | CG45074-PA | 213..353 | 171..338 | 271 | 34.7 | Plus |
Kr-h1-PB | 845 | CG45074-PB | 267..407 | 171..338 | 271 | 34.7 | Plus |