Clone Sequence Records
BS04541.5prime Sequence
443 bp (374 high quality bases) assembled on 2005-12-01
> BS04541.5prime
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGTCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAG
CTACCGCATCACATTTGCTCAACGTGCCAGGAAACTGTGAATA
BS04541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-PA | 1764 | CG17803-RA | 1..427 | 17..443 | 2110 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-RB | 2238 | CG17803-RB | 352..778 | 17..443 | 2120 | 99.8 | Plus |
CG17803-RA | 2019 | CG17803-RA | 133..559 | 17..443 | 2120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17800720..17801051 | 383..52 | 1630 | 99.4 | Minus |
3R | 32079331 | 3R | 17800460..17800524 | 443..379 | 325 | 100 | Minus |
3R | 32079331 | 3R | 17801111..17801161 | 67..17 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:35:44 has no hits.
BS04541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:23 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:44 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:56 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 127..558 | 8..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:58 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 127..558 | 8..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:58 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17800724..17801050 | 53..379 | 99 | <- | Minus |
3R | 17801126..17801167 | 8..52 | 91 | | Minus |
3R | 17800461..17800523 | 380..442 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:56 Download gff for
BS04541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13626183..13626245 | 380..442 | 100 | <- | Minus |
arm_3R | 13626446..13626772 | 53..379 | 99 | <- | Minus |
arm_3R | 13626848..13626889 | 8..52 | 91 | | Minus |
BS04541.3prime Sequence
395 bp (312 high quality bases) assembled on 2005-12-01
> BS04541.3prime
ATGGTCTAGAAAGCTTTTATATATATTCAATAGTTTGAGTCTTTTCATCC
TGAGTTCTGGCTCGCACTTCCTGTGCATTTGGCTGCATTGGTGTTTGAGA
TTCAAAGTCCATTTCCTTATCAATATCTTTAAATGCTTGTTGCAGTCCAT
TAACTTCTTCTTTTATAGCTTTCTGCATATTATCCCGATGCAAATCGGTG
TTTTTGTGTTTGTTTAGATTATATCTATGGCGGTAGTGAACATCGCAGAT
CTCGCACCGATGAGGATGCATTCCTGTGTGTACATCCTGATGCTTTGTTA
GTTGGGAGCGCAGCAAGAATCCCTTTAGGCAGATGTCACAGCGAATGGGA
AACTTGTCGTGCAAAGCTTGATGTCGTTTCATGGCAGATGGGTCA
BS04541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-PA | 1764 | CG17803-RA | 1386..1764 | 395..17 | 1870 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-RB | 2238 | CG17803-RB | 1737..2115 | 395..17 | 1880 | 99.7 | Minus |
CG17803-RA | 2019 | CG17803-RA | 1518..1896 | 395..17 | 1880 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17799000..17799241 | 17..258 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 17799305..17799445 | 255..395 | 690 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:26:51 has no hits.
BS04541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:22 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-PA | 1387..1764 | 17..394 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:42 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-PA | 1387..1764 | 17..394 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:53 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 1519..1899 | 10..394 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:49 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 1519..1899 | 10..394 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:49 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17799308..17799444 | 258..394 | 99 | | Plus |
3R | 17798995..17799240 | 10..257 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:53 Download gff for
BS04541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13625030..13625166 | 258..394 | 99 | | Plus |
arm_3R | 13624717..13624962 | 10..257 | 98 | <- | Plus |
BS04541.complete Sequence
1796 bp assembled on 2009-08-24
GenBank Submission: KX798733
> BS04541.complete
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGTCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAG
CTACCGCATCACATTTGCTCAACGTGCCAGGAAACTGTGAATAAATCCAT
GGAATTCCGTGCCAAATGCCAGCAGGTCGACAAAAAGCTTAGGCAGACGA
CGGAAAAGTACAACATTCAAATCTGTGACGAGGAAATGGAGTCGGAGCTG
GAAAATGTGCTCTACGAAGAGTCCGCCCAGCAGGCAAAGGGAGTCGTAGG
ACTAGAAGATTTCAGCTCAGAGTTGTTGCCGGATAGTGAGGGTGTCCTGG
ATGAAGACGACTTTCCACTGGATGCAGAGCCAACTCAGTTTTCACTAAGT
GAAGATGAGTTGGATCTAGACAGAGACACAGAAAAAGACTTTGCTTTGGA
GCAAAACAAGTCATGTAATGAAATAATTAGCATACGAAAGTGTAAGACTA
AGGAAGAGATTGGTAAGGTAGATCACGGAGCCAAGGTCTATAAGGTTGTG
CTCGGTGAGTACAATAGCCTAAAGGAAACTGCACCAAAGTATTCGCTTTC
ACTACCAAAGAAACCTCAACTAAGGGTGAGTCCAGAGGAGAAAAACCGAA
GGCGCCGCGAAAGGATACAAGCGAAGCCATTGAACTATGTCTGCGACAAG
TGCGGCCACACCTTTCGCCAACGCAGTCAGCTGCAGATGCACTTGCTCCG
TCACAATAGGGCCAAGAATTTCGAGTGCCCCGAATGCCCGAAGAAATTCT
ACGATCTCTATACGCGCAACATTCACGTAAGAGCGCTGCACAAGGGCGAG
CATCCCTTTCCCTGCAACCATTGCAATGAGTCCTTCGCAAACGCAAGCAG
TCGTCACAGGCACGAGAGGGATGTTCACGGAGCAGGCAATCGGATTCGAA
CGCGGGTGAAATCAAAGGAAGAGGGATCCAGTCGCCATTACTGCACCCAG
TGCACCAAAAGTTATACCAGCAAGAAAGGTCTAGTCCTGCACATGAACTT
CCACAACGGAAGCAGACCCTTCCAGTGCAAGATTTGCCAGATGAAATTCG
CTGACCCATCTGCCATGAAACGACATCAAGCTTTGCACGACAAGTTTCCC
ATTCGCTGTGACATCTGCCTAAAGGGATTCCTGCTGCGCTCCCAACTAAC
AAAGCATCAGGATGTACACACAGGAATGCATCCTCATCGGTGCGAGATCT
GCGATGTTCACTACCGCCATAGATATAATCTAAACAAACACAAAAACACC
GATTTGCATCGGGATAATATGCAGAAAGCTATAAAAGAAGAAGTTAATGG
ACTGCAACAAGCATTTAAAGATATTGATAAGGAAATGGACTTTGAATCTC
AAACACCAATGCAGCCAAATGCACAGGAAGTGCGAGCCAGAACTCAGGAT
GAAAAGACTCAAACTATTGAATATATATAAAAGCTTTCTAGACCAT
BS04541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-RB | 1764 | CG17803-PB | 1..1764 | 17..1780 | 8805 | 99.9 | Plus |
CG17803-RA | 1764 | CG17803-PA | 1..1764 | 17..1780 | 8805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-RB | 2238 | CG17803-RB | 352..2115 | 17..1780 | 8805 | 99.9 | Plus |
CG17803-RA | 2019 | CG17803-RA | 133..1896 | 17..1780 | 8805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17799684..17800524 | 1219..379 | 4205 | 100 | Minus |
3R | 32079331 | 3R | 17799305..17799630 | 1542..1217 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 17800720..17801051 | 383..52 | 1630 | 99.4 | Minus |
3R | 32079331 | 3R | 17799000..17799241 | 1780..1539 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 17801111..17801161 | 67..17 | 210 | 94.1 | Minus |
Blast to na_te.dros performed 2014-11-28 01:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 3166..3218 | 618..566 | 121 | 69.8 | Minus |
BS04541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:29 Download gff for
BS04541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 133..1894 | 17..1778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:00 Download gff for
BS04541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 133..1894 | 17..1778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:34 Download gff for
BS04541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17803-RA | 133..1894 | 17..1778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:34 Download gff for
BS04541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17799002..17799240 | 1540..1778 | 100 | <- | Minus |
3R | 17799308..17799628 | 1219..1539 | 100 | <- | Minus |
3R | 17799685..17800523 | 380..1218 | 100 | <- | Minus |
3R | 17800724..17801050 | 53..379 | 99 | <- | Minus |
3R | 17801126..17801161 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:00 Download gff for
BS04541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13624724..13624962 | 1540..1778 | 100 | <- | Minus |
arm_3R | 13625030..13625350 | 1219..1539 | 100 | <- | Minus |
arm_3R | 13625407..13626245 | 380..1218 | 100 | <- | Minus |
arm_3R | 13626446..13626772 | 53..379 | 99 | <- | Minus |
arm_3R | 13626848..13626883 | 17..52 | 100 | | Minus |
BS04541.pep Sequence
Translation from 16 to 1779
> BS04541.pep
MRSSRTASDSKWVRQSNDNKDTMRSSRQVNKKLVKLFLAEADDSDATCTT
STALDTTTADSAFFDSDFEEESTGLQECDPPPASKCRTCFRIISRHEDAQ
DLYDRVNIALLHHIKVITGVWIQQGVKELPHHICSTCQETVNKSMEFRAK
CQQVDKKLRQTTEKYNIQICDEEMESELENVLYEESAQQAKGVVGLEDFS
SELLPDSEGVLDEDDFPLDAEPTQFSLSEDELDLDRDTEKDFALEQNKSC
NEIISIRKCKTKEEIGKVDHGAKVYKVVLGEYNSLKETAPKYSLSLPKKP
QLRVSPEEKNRRRRERIQAKPLNYVCDKCGHTFRQRSQLQMHLLRHNRAK
NFECPECPKKFYDLYTRNIHVRALHKGEHPFPCNHCNESFANASSRHRHE
RDVHGAGNRIRTRVKSKEEGSSRHYCTQCTKSYTSKKGLVLHMNFHNGSR
PFQCKICQMKFADPSAMKRHQALHDKFPIRCDICLKGFLLRSQLTKHQDV
HTGMHPHRCEICDVHYRHRYNLNKHKNTDLHRDNMQKAIKEEVNGLQQAF
KDIDKEMDFESQTPMQPNAQEVRARTQDEKTQTIEYI*
BS04541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17803-PB | 587 | CG17803-PB | 1..587 | 1..587 | 3147 | 100 | Plus |
CG17803-PA | 587 | CG17803-PA | 1..587 | 1..587 | 3147 | 100 | Plus |
CG6689-PA | 613 | CG6689-PA | 94..603 | 10..537 | 800 | 32.6 | Plus |
CG17801-PB | 381 | CG17801-PB | 28..362 | 108..470 | 378 | 28.4 | Plus |
CG17802-PA | 439 | CG17802-PA | 4..415 | 85..470 | 370 | 25.9 | Plus |