Clone BS04541 Report

Search the DGRC for BS04541

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG17803-RA
Protein status:BS04541.pep: full length peptide match
Sequenced Size:1796

Clone Sequence Records

BS04541.5prime Sequence

443 bp (374 high quality bases) assembled on 2005-12-01

> BS04541.5prime
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGTCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAG
CTACCGCATCACATTTGCTCAACGTGCCAGGAAACTGTGAATA

BS04541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PA 1764 CG17803-RA 1..427 17..443 2110 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 352..778 17..443 2120 99.8 Plus
CG17803-RA 2019 CG17803-RA 133..559 17..443 2120 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17800720..17801051 383..52 1630 99.4 Minus
3R 32079331 3R 17800460..17800524 443..379 325 100 Minus
3R 32079331 3R 17801111..17801161 67..17 210 94.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:35:44 has no hits.

BS04541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:23 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:44 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:56 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 127..558 8..442 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:58 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 127..558 8..442 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:58 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17800724..17801050 53..379 99 <- Minus
3R 17801126..17801167 8..52 91   Minus
3R 17800461..17800523 380..442 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:56 Download gff for BS04541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13626183..13626245 380..442 100 <- Minus
arm_3R 13626446..13626772 53..379 99 <- Minus
arm_3R 13626848..13626889 8..52 91   Minus

BS04541.3prime Sequence

395 bp (312 high quality bases) assembled on 2005-12-01

> BS04541.3prime
ATGGTCTAGAAAGCTTTTATATATATTCAATAGTTTGAGTCTTTTCATCC
TGAGTTCTGGCTCGCACTTCCTGTGCATTTGGCTGCATTGGTGTTTGAGA
TTCAAAGTCCATTTCCTTATCAATATCTTTAAATGCTTGTTGCAGTCCAT
TAACTTCTTCTTTTATAGCTTTCTGCATATTATCCCGATGCAAATCGGTG
TTTTTGTGTTTGTTTAGATTATATCTATGGCGGTAGTGAACATCGCAGAT
CTCGCACCGATGAGGATGCATTCCTGTGTGTACATCCTGATGCTTTGTTA
GTTGGGAGCGCAGCAAGAATCCCTTTAGGCAGATGTCACAGCGAATGGGA
AACTTGTCGTGCAAAGCTTGATGTCGTTTCATGGCAGATGGGTCA

BS04541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PA 1764 CG17803-RA 1386..1764 395..17 1870 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 1737..2115 395..17 1880 99.7 Minus
CG17803-RA 2019 CG17803-RA 1518..1896 395..17 1880 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17799000..17799241 17..258 1210 100 Plus
3R 32079331 3R 17799305..17799445 255..395 690 99.3 Plus
Blast to na_te.dros performed on 2015-02-06 13:26:51 has no hits.

BS04541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:22 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1387..1764 17..394 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:13:42 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-PA 1387..1764 17..394 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:53 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 1519..1899 10..394 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:49 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 1519..1899 10..394 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:49 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17799308..17799444 258..394 99   Plus
3R 17798995..17799240 10..257 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:53 Download gff for BS04541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13625030..13625166 258..394 99   Plus
arm_3R 13624717..13624962 10..257 98 <- Plus

BS04541.complete Sequence

1796 bp assembled on 2009-08-24

GenBank Submission: KX798733

> BS04541.complete
GAAGTTATCAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAAT
GGGTGCGCCAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAG
GTTAACAAAAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGA
CGCCACCTGCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTG
CGTTTTTTGATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGC
GATCCCCCGCCGGCAAGCAAGTGTCGCACCTGCTTTCGCATCATATCGCG
GCATGAGGATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGC
ACCACATAAAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAG
CTACCGCATCACATTTGCTCAACGTGCCAGGAAACTGTGAATAAATCCAT
GGAATTCCGTGCCAAATGCCAGCAGGTCGACAAAAAGCTTAGGCAGACGA
CGGAAAAGTACAACATTCAAATCTGTGACGAGGAAATGGAGTCGGAGCTG
GAAAATGTGCTCTACGAAGAGTCCGCCCAGCAGGCAAAGGGAGTCGTAGG
ACTAGAAGATTTCAGCTCAGAGTTGTTGCCGGATAGTGAGGGTGTCCTGG
ATGAAGACGACTTTCCACTGGATGCAGAGCCAACTCAGTTTTCACTAAGT
GAAGATGAGTTGGATCTAGACAGAGACACAGAAAAAGACTTTGCTTTGGA
GCAAAACAAGTCATGTAATGAAATAATTAGCATACGAAAGTGTAAGACTA
AGGAAGAGATTGGTAAGGTAGATCACGGAGCCAAGGTCTATAAGGTTGTG
CTCGGTGAGTACAATAGCCTAAAGGAAACTGCACCAAAGTATTCGCTTTC
ACTACCAAAGAAACCTCAACTAAGGGTGAGTCCAGAGGAGAAAAACCGAA
GGCGCCGCGAAAGGATACAAGCGAAGCCATTGAACTATGTCTGCGACAAG
TGCGGCCACACCTTTCGCCAACGCAGTCAGCTGCAGATGCACTTGCTCCG
TCACAATAGGGCCAAGAATTTCGAGTGCCCCGAATGCCCGAAGAAATTCT
ACGATCTCTATACGCGCAACATTCACGTAAGAGCGCTGCACAAGGGCGAG
CATCCCTTTCCCTGCAACCATTGCAATGAGTCCTTCGCAAACGCAAGCAG
TCGTCACAGGCACGAGAGGGATGTTCACGGAGCAGGCAATCGGATTCGAA
CGCGGGTGAAATCAAAGGAAGAGGGATCCAGTCGCCATTACTGCACCCAG
TGCACCAAAAGTTATACCAGCAAGAAAGGTCTAGTCCTGCACATGAACTT
CCACAACGGAAGCAGACCCTTCCAGTGCAAGATTTGCCAGATGAAATTCG
CTGACCCATCTGCCATGAAACGACATCAAGCTTTGCACGACAAGTTTCCC
ATTCGCTGTGACATCTGCCTAAAGGGATTCCTGCTGCGCTCCCAACTAAC
AAAGCATCAGGATGTACACACAGGAATGCATCCTCATCGGTGCGAGATCT
GCGATGTTCACTACCGCCATAGATATAATCTAAACAAACACAAAAACACC
GATTTGCATCGGGATAATATGCAGAAAGCTATAAAAGAAGAAGTTAATGG
ACTGCAACAAGCATTTAAAGATATTGATAAGGAAATGGACTTTGAATCTC
AAACACCAATGCAGCCAAATGCACAGGAAGTGCGAGCCAGAACTCAGGAT
GAAAAGACTCAAACTATTGAATATATATAAAAGCTTTCTAGACCAT

BS04541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 1764 CG17803-PB 1..1764 17..1780 8805 99.9 Plus
CG17803-RA 1764 CG17803-PA 1..1764 17..1780 8805 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-RB 2238 CG17803-RB 352..2115 17..1780 8805 99.9 Plus
CG17803-RA 2019 CG17803-RA 133..1896 17..1780 8805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17799684..17800524 1219..379 4205 100 Minus
3R 32079331 3R 17799305..17799630 1542..1217 1630 100 Minus
3R 32079331 3R 17800720..17801051 383..52 1630 99.4 Minus
3R 32079331 3R 17799000..17799241 1780..1539 1210 100 Minus
3R 32079331 3R 17801111..17801161 67..17 210 94.1 Minus
Blast to na_te.dros performed 2014-11-28 01:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3166..3218 618..566 121 69.8 Minus

BS04541.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:29 Download gff for BS04541.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1894 17..1778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:00 Download gff for BS04541.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1894 17..1778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:34 Download gff for BS04541.complete
Subject Subject Range Query Range Percent Splice Strand
CG17803-RA 133..1894 17..1778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:34 Download gff for BS04541.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17799002..17799240 1540..1778 100 <- Minus
3R 17799308..17799628 1219..1539 100 <- Minus
3R 17799685..17800523 380..1218 100 <- Minus
3R 17800724..17801050 53..379 99 <- Minus
3R 17801126..17801161 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:00 Download gff for BS04541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13624724..13624962 1540..1778 100 <- Minus
arm_3R 13625030..13625350 1219..1539 100 <- Minus
arm_3R 13625407..13626245 380..1218 100 <- Minus
arm_3R 13626446..13626772 53..379 99 <- Minus
arm_3R 13626848..13626883 17..52 100   Minus

BS04541.pep Sequence

Translation from 16 to 1779

> BS04541.pep
MRSSRTASDSKWVRQSNDNKDTMRSSRQVNKKLVKLFLAEADDSDATCTT
STALDTTTADSAFFDSDFEEESTGLQECDPPPASKCRTCFRIISRHEDAQ
DLYDRVNIALLHHIKVITGVWIQQGVKELPHHICSTCQETVNKSMEFRAK
CQQVDKKLRQTTEKYNIQICDEEMESELENVLYEESAQQAKGVVGLEDFS
SELLPDSEGVLDEDDFPLDAEPTQFSLSEDELDLDRDTEKDFALEQNKSC
NEIISIRKCKTKEEIGKVDHGAKVYKVVLGEYNSLKETAPKYSLSLPKKP
QLRVSPEEKNRRRRERIQAKPLNYVCDKCGHTFRQRSQLQMHLLRHNRAK
NFECPECPKKFYDLYTRNIHVRALHKGEHPFPCNHCNESFANASSRHRHE
RDVHGAGNRIRTRVKSKEEGSSRHYCTQCTKSYTSKKGLVLHMNFHNGSR
PFQCKICQMKFADPSAMKRHQALHDKFPIRCDICLKGFLLRSQLTKHQDV
HTGMHPHRCEICDVHYRHRYNLNKHKNTDLHRDNMQKAIKEEVNGLQQAF
KDIDKEMDFESQTPMQPNAQEVRARTQDEKTQTIEYI*

BS04541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17803-PB 587 CG17803-PB 1..587 1..587 3147 100 Plus
CG17803-PA 587 CG17803-PA 1..587 1..587 3147 100 Plus
CG6689-PA 613 CG6689-PA 94..603 10..537 800 32.6 Plus
CG17801-PB 381 CG17801-PB 28..362 108..470 378 28.4 Plus
CG17802-PA 439 CG17802-PA 4..415 85..470 370 25.9 Plus