Clone Sequence Records
BS04547.3prime Sequence
529 bp (475 high quality bases) assembled on 2005-12-01
> BS04547.3prime
ATGGTCTAGAAAGCTTTCAGCTCTCGATGCCCTCCGCCTCTAACTGGGCC
TCAATGATATCTGCGTGCAGGCGCACCATGTGGTTATTCAGGTTGCCAAC
GCTCTGGTAGCACTTGTCACAGTACTCACAGGCGAATGGCTTCTCGCCGG
TGTGCACCAGGAGGTGGGAGTTGAGGTGGCCACGAGTGAAGAAGGCCTTC
GAGCAGCGATCGCACTTGAAGGGCCGCTCCATGTTGGGGTTGTGGGAGCG
CATATGGGTGCGGAGGTCGGACTTGGTGGGCCAGCTCTTCGAGCAGCGCT
GGCACTCGAATATGCGCGGCTTGGCTTCGCCGGTGTGGGTGCGCAGGTGG
GACAGCAGCTGCGTGCGCAGGATGAAGCGGCGGTCGCAGTGCTGGCAGCC
GAATGGACGCTCCGTTGAGTGCACCGACTTCACGTGGTAGCGAAGACTGT
GCCGCGAGGCAAAGTTCTTGCGGCACTCCTCGCACTGGTACCTCATCTCG
CCCATGCCGTGAACGGCTGTCATGTGCAG
BS04547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-PA | 1257 | CG30431-RA | 745..1257 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-RA | 1849 | CG30431-RA | 967..1479 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6204342..6204854 | 529..17 | 2565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:42:42 has no hits.
BS04547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:35 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-PA | 745..1257 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:00 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-PA | 745..1257 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:01 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 967..1482 | 13..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:32 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 967..1482 | 13..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:32 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6204342..6204857 | 13..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:01 Download gff for
BS04547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2091847..2092362 | 13..529 | 99 | | Minus |
BS04547.5prime Sequence
499 bp (452 high quality bases) assembled on 2005-12-01
> BS04547.5prime
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTT
CCAAGACAGCTCGCACAGTGAACATGATATTCCCTCGTACTGAGAATCG
BS04547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-PA | 1257 | CG30431-RA | 1..483 | 17..499 | 2390 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-RA | 1849 | CG30431-RA | 223..705 | 17..499 | 2400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6202947..6203367 | 17..437 | 2105 | 100 | Plus |
2R | 25286936 | 2R | 6204018..6204080 | 437..499 | 300 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:03:37 has no hits.
BS04547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:36 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:01 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:48 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 217..705 | 10..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:01:12 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 217..705 | 10..499 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:01:12 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6202941..6203367 | 10..437 | 99 | -> | Plus |
2R | 6204019..6204080 | 438..499 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:48 Download gff for
BS04547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2090446..2090872 | 10..437 | 99 | -> | Plus |
arm_2R | 2091524..2091585 | 438..499 | 98 | | Plus |
BS04547.complete Sequence
1289 bp assembled on 2010-05-12
GenBank Submission: KX796322
> BS04547.complete
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTT
CCAAGACAGCTCGCACAGTGAACATGATATTCCCTCGTACTGGGAATCGT
CGGTAGATTCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAGACCGCC
GAGCTCTTTGCAGTCGAGCCCCCAACGCCGCCGGAATCATCCGAAGAGCC
GGCACCTGATGCCGCAGAAAAGCCCAAGATGCGGAGAGCCAGGCCGCGCC
AGGATAACGTCAAGCCCAAGGAGAGGAAGGCCTCTGGTGCCGTGCACCCG
CGATCCTTGCACCCGTGCCCCGAGTGCGAAAAGAAGTTCACTCGCAACTT
TCAGCTGAAGCTGCACATGACAGCCGTTCACGGCATGGGCGAGATGAGGT
ACCAGTGCGAGGAGTGCCGCAAGAACTTTGCCTCGCGGCACAGTCTTCGC
TACCACGTGAAGTCGGTGCACTCAACGGAGCGTCCATTCGGCTGCCAGCA
CTGCGACCGCCGCTTCATCCTGCGCACGCAGCTGCTGTCCCACCTGCGCA
CCCACACCGGCGAAGCCAAGCCGCGCATATTCGAGTGCCAGCGCTGCTCG
AAGAGCTGGCCCACCAAGTCCGACCTCCGCACCCATATGCGCTCCCACAA
CCCCAACATGGAGCGGCCCTTCAAGTGCGATCGCTGCTCGAAGGCCTTCT
TCACTCGTGGCCACCTCAACTCCCACCTCCTGGTGCACACCGGCGAGAAG
CCATTCGCCTGTGAGTACTGTGACAAGTGCTACCAGAGCGTTGGCAACCT
GAATAACCACATGGTGCGCCTGCACGCAGATATCATTGAGGCCCAGTTAG
AGGCGGAGGGCATCGAGAGCTGAAAGCTTTCTAGACCAT
BS04547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-RA | 1257 | CG30431-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-RA | 1849 | CG30431-RA | 223..1479 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6204018..6204854 | 437..1273 | 4185 | 100 | Plus |
2R | 25286936 | 2R | 6202947..6203367 | 17..437 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:05:20 has no hits.
BS04547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:05 Download gff for
BS04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 205..1460 | 17..1272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:29 Download gff for
BS04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 223..1478 | 17..1272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:27 Download gff for
BS04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30431-RA | 223..1478 | 17..1272 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:27 Download gff for
BS04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6202947..6203367 | 17..437 | 100 | -> | Plus |
2R | 6204019..6204853 | 438..1272 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:29 Download gff for
BS04547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2090452..2090872 | 17..437 | 100 | -> | Plus |
arm_2R | 2091524..2092358 | 438..1272 | 100 | | Plus |
BS04547.pep Sequence
Translation from 16 to 1272
> BS04547.pep
MLSLLPHHPLVCRCCLLEQPPLYHSLYDASSQLAVELKALAPALRLEHGD
NLTDVICDLCLRRLHDARDFQRRCEHSEQVLRMRHEHWKHTVAVGDALAL
DDVLECLEREVGSLEGPMSVPLQASKPVAHVAPLMETVDFESLDFQDSSH
SEHDIPSYWESSVDSGSLNTPHHQPETAELFAVEPPTPPESSEEPAPDAA
EKPKMRRARPRQDNVKPKERKASGAVHPRSLHPCPECEKKFTRNFQLKLH
MTAVHGMGEMRYQCEECRKNFASRHSLRYHVKSVHSTERPFGCQHCDRRF
ILRTQLLSHLRTHTGEAKPRIFECQRCSKSWPTKSDLRTHMRSHNPNMER
PFKCDRCSKAFFTRGHLNSHLLVHTGEKPFACEYCDKCYQSVGNLNNHMV
RLHADIIEAQLEAEGIES*
BS04547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30431-PA | 418 | CG30431-PA | 1..418 | 1..418 | 2281 | 100 | Plus |
crol-PC | 756 | CG14938-PC | 349..521 | 230..405 | 360 | 41.3 | Plus |
crol-PG | 878 | CG14938-PG | 471..643 | 230..405 | 360 | 41.3 | Plus |
crol-PD | 878 | CG14938-PD | 471..643 | 230..405 | 360 | 41.3 | Plus |
CG15436-PA | 346 | CG15436-PA | 128..288 | 234..403 | 358 | 41.8 | Plus |
CG15436-PA | 346 | CG15436-PA | 109..319 | 192..405 | 333 | 34.2 | Plus |
CG15436-PA | 346 | CG15436-PA | 4..345 | 11..403 | 328 | 26 | Plus |
crol-PG | 878 | CG14938-PG | 344..526 | 211..405 | 315 | 33.3 | Plus |
crol-PC | 756 | CG14938-PC | 239..404 | 232..405 | 314 | 35.1 | Plus |
crol-PC | 756 | CG14938-PC | 183..345 | 232..403 | 308 | 38.4 | Plus |
crol-PC | 756 | CG14938-PC | 265..430 | 230..403 | 287 | 34.5 | Plus |
crol-PC | 756 | CG14938-PC | 179..317 | 258..403 | 268 | 37 | Plus |
crol-PG | 878 | CG14938-PG | 221..383 | 232..403 | 239 | 33.7 | Plus |
crol-PC | 756 | CG14938-PC | 407..525 | 232..351 | 218 | 37.4 | Plus |
crol-PG | 878 | CG14938-PG | 529..647 | 232..351 | 218 | 37.4 | Plus |