Clone BS04547 Report

Search the DGRC for BS04547

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG30431-RA
Protein status:BS04547.pep: full length peptide match
Sequenced Size:1289

Clone Sequence Records

BS04547.3prime Sequence

529 bp (475 high quality bases) assembled on 2005-12-01

> BS04547.3prime
ATGGTCTAGAAAGCTTTCAGCTCTCGATGCCCTCCGCCTCTAACTGGGCC
TCAATGATATCTGCGTGCAGGCGCACCATGTGGTTATTCAGGTTGCCAAC
GCTCTGGTAGCACTTGTCACAGTACTCACAGGCGAATGGCTTCTCGCCGG
TGTGCACCAGGAGGTGGGAGTTGAGGTGGCCACGAGTGAAGAAGGCCTTC
GAGCAGCGATCGCACTTGAAGGGCCGCTCCATGTTGGGGTTGTGGGAGCG
CATATGGGTGCGGAGGTCGGACTTGGTGGGCCAGCTCTTCGAGCAGCGCT
GGCACTCGAATATGCGCGGCTTGGCTTCGCCGGTGTGGGTGCGCAGGTGG
GACAGCAGCTGCGTGCGCAGGATGAAGCGGCGGTCGCAGTGCTGGCAGCC
GAATGGACGCTCCGTTGAGTGCACCGACTTCACGTGGTAGCGAAGACTGT
GCCGCGAGGCAAAGTTCTTGCGGCACTCCTCGCACTGGTACCTCATCTCG
CCCATGCCGTGAACGGCTGTCATGTGCAG

BS04547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-PA 1257 CG30431-RA 745..1257 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-RA 1849 CG30431-RA 967..1479 529..17 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6204342..6204854 529..17 2565 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:42:42 has no hits.

BS04547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:35 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-PA 745..1257 17..529 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:00 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-PA 745..1257 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:33:01 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 967..1482 13..529 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:32 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 967..1482 13..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:32 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6204342..6204857 13..529 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:33:01 Download gff for BS04547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2091847..2092362 13..529 99   Minus

BS04547.5prime Sequence

499 bp (452 high quality bases) assembled on 2005-12-01

> BS04547.5prime
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTT
CCAAGACAGCTCGCACAGTGAACATGATATTCCCTCGTACTGAGAATCG

BS04547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-PA 1257 CG30431-RA 1..483 17..499 2390 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-RA 1849 CG30431-RA 223..705 17..499 2400 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6202947..6203367 17..437 2105 100 Plus
2R 25286936 2R 6204018..6204080 437..499 300 98.4 Plus
Blast to na_te.dros performed on 2015-02-13 09:03:37 has no hits.

BS04547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:36 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:01 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:26:48 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 217..705 10..499 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:01:12 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 217..705 10..499 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:01:12 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6202941..6203367 10..437 99 -> Plus
2R 6204019..6204080 438..499 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:26:48 Download gff for BS04547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2090446..2090872 10..437 99 -> Plus
arm_2R 2091524..2091585 438..499 98   Plus

BS04547.complete Sequence

1289 bp assembled on 2010-05-12

GenBank Submission: KX796322

> BS04547.complete
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTT
CCAAGACAGCTCGCACAGTGAACATGATATTCCCTCGTACTGGGAATCGT
CGGTAGATTCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAGACCGCC
GAGCTCTTTGCAGTCGAGCCCCCAACGCCGCCGGAATCATCCGAAGAGCC
GGCACCTGATGCCGCAGAAAAGCCCAAGATGCGGAGAGCCAGGCCGCGCC
AGGATAACGTCAAGCCCAAGGAGAGGAAGGCCTCTGGTGCCGTGCACCCG
CGATCCTTGCACCCGTGCCCCGAGTGCGAAAAGAAGTTCACTCGCAACTT
TCAGCTGAAGCTGCACATGACAGCCGTTCACGGCATGGGCGAGATGAGGT
ACCAGTGCGAGGAGTGCCGCAAGAACTTTGCCTCGCGGCACAGTCTTCGC
TACCACGTGAAGTCGGTGCACTCAACGGAGCGTCCATTCGGCTGCCAGCA
CTGCGACCGCCGCTTCATCCTGCGCACGCAGCTGCTGTCCCACCTGCGCA
CCCACACCGGCGAAGCCAAGCCGCGCATATTCGAGTGCCAGCGCTGCTCG
AAGAGCTGGCCCACCAAGTCCGACCTCCGCACCCATATGCGCTCCCACAA
CCCCAACATGGAGCGGCCCTTCAAGTGCGATCGCTGCTCGAAGGCCTTCT
TCACTCGTGGCCACCTCAACTCCCACCTCCTGGTGCACACCGGCGAGAAG
CCATTCGCCTGTGAGTACTGTGACAAGTGCTACCAGAGCGTTGGCAACCT
GAATAACCACATGGTGCGCCTGCACGCAGATATCATTGAGGCCCAGTTAG
AGGCGGAGGGCATCGAGAGCTGAAAGCTTTCTAGACCAT

BS04547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-RA 1257 CG30431-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-RA 1849 CG30431-RA 223..1479 17..1273 6285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6204018..6204854 437..1273 4185 100 Plus
2R 25286936 2R 6202947..6203367 17..437 2105 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:05:20 has no hits.

BS04547.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:05 Download gff for BS04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 205..1460 17..1272 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:29 Download gff for BS04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 223..1478 17..1272 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:27 Download gff for BS04547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30431-RA 223..1478 17..1272 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:27 Download gff for BS04547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6202947..6203367 17..437 100 -> Plus
2R 6204019..6204853 438..1272 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:29 Download gff for BS04547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2090452..2090872 17..437 100 -> Plus
arm_2R 2091524..2092358 438..1272 100   Plus

BS04547.pep Sequence

Translation from 16 to 1272

> BS04547.pep
MLSLLPHHPLVCRCCLLEQPPLYHSLYDASSQLAVELKALAPALRLEHGD
NLTDVICDLCLRRLHDARDFQRRCEHSEQVLRMRHEHWKHTVAVGDALAL
DDVLECLEREVGSLEGPMSVPLQASKPVAHVAPLMETVDFESLDFQDSSH
SEHDIPSYWESSVDSGSLNTPHHQPETAELFAVEPPTPPESSEEPAPDAA
EKPKMRRARPRQDNVKPKERKASGAVHPRSLHPCPECEKKFTRNFQLKLH
MTAVHGMGEMRYQCEECRKNFASRHSLRYHVKSVHSTERPFGCQHCDRRF
ILRTQLLSHLRTHTGEAKPRIFECQRCSKSWPTKSDLRTHMRSHNPNMER
PFKCDRCSKAFFTRGHLNSHLLVHTGEKPFACEYCDKCYQSVGNLNNHMV
RLHADIIEAQLEAEGIES*

BS04547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30431-PA 418 CG30431-PA 1..418 1..418 2281 100 Plus
crol-PC 756 CG14938-PC 349..521 230..405 360 41.3 Plus
crol-PG 878 CG14938-PG 471..643 230..405 360 41.3 Plus
crol-PD 878 CG14938-PD 471..643 230..405 360 41.3 Plus
CG15436-PA 346 CG15436-PA 128..288 234..403 358 41.8 Plus
CG15436-PA 346 CG15436-PA 109..319 192..405 333 34.2 Plus
CG15436-PA 346 CG15436-PA 4..345 11..403 328 26 Plus
crol-PG 878 CG14938-PG 344..526 211..405 315 33.3 Plus
crol-PC 756 CG14938-PC 239..404 232..405 314 35.1 Plus
crol-PC 756 CG14938-PC 183..345 232..403 308 38.4 Plus
crol-PC 756 CG14938-PC 265..430 230..403 287 34.5 Plus
crol-PC 756 CG14938-PC 179..317 258..403 268 37 Plus
crol-PG 878 CG14938-PG 221..383 232..403 239 33.7 Plus
crol-PC 756 CG14938-PC 407..525 232..351 218 37.4 Plus
crol-PG 878 CG14938-PG 529..647 232..351 218 37.4 Plus