Clone BS04561 Report

Search the DGRC for BS04561

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptsc-RA
Protein status:BS04561.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04561.3prime Sequence

925 bp (783 high quality bases) assembled on 2005-12-01

> BS04561.3prime
ATGGTCTAGAAAGCTTTCACTGCTCCTGCCATAGAGAGATGTAGTCCAAA
ATCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTC
GTACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGT
CCAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCT
TCGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGG
CGAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTC
CACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTC
AGCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAG
AGGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAAC
TGCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGT
TGAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAG
GTCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCA
GTGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTT
GTCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAA
GCTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTT
GGACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGC
GATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGG
TGTATACTTGCGAGTCTTAATTGGGATTGTGCCAGCGGGTTGATTTTGAT
TGCCCCCGGGGAATAATGGACTAGG

BS04561.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 130..1038 925..17 4445 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 247..1155 925..17 4485 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396306..397214 925..17 4485 99.6 Minus
Blast to na_te.dros performed 2015-02-02 19:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 397..226 150 57.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 400..225 136 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 397..316 133 65.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 400..226 124 59.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 400..369 124 87.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 456..345 122 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 398..316 121 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 400..326 117 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 400..228 116 59.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 431..364 110 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1073..1121 400..352 110 69.4 Minus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 431..364 110 66.7 Minus

BS04561.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:51:53 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:23 Download gff for BS04561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 130..1038 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:03 Download gff for BS04561.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 247..1158 11..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:06 Download gff for BS04561.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 247..1158 11..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:06 Download gff for BS04561.3prime
Subject Subject Range Query Range Percent Splice Strand
X 396306..397217 11..925 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:03 Download gff for BS04561.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290339..291250 11..925 99   Minus

BS04561.5prime Sequence

800 bp (704 high quality bases) assembled on 2005-12-01

> BS04561.5prime
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCCCCAGCAAAA

BS04561.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 1..784 17..800 3895 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 118..901 17..800 3905 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396177..396960 17..800 3905 99.9 Plus
Blast to na_te.dros performed 2015-02-12 11:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2391 674..726 136 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 674..755 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 671..702 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6824 671..726 123 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 615..726 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 673..755 121 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 671..745 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6779 671..726 115 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6800 671..726 115 69.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 640..707 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1073..1121 671..719 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 640..707 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1106..1176 671..743 107 64.4 Plus

BS04561.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:51:54 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:25 Download gff for BS04561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:46 Download gff for BS04561.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..897 11..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:43 Download gff for BS04561.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..897 11..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:43 Download gff for BS04561.5prime
Subject Subject Range Query Range Percent Splice Strand
X 396173..396956 11..796 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:46 Download gff for BS04561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290206..290989 11..796 99   Plus

BS04561.complete Sequence

1070 bp (1070 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634970

> BS04561.complete
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTACGAAGGAGTTCCCCAACAAATATCCACCCACCT
GGATCGTCTGGATCATCTGGACAACGAATTACACACGCACTCCCAACTTC
AGCTAAAATTTGAACCGTACGAACATTTTCAATTAGACGAGGAGGACTGC
ACCCCCGACGACGAGGAGATTTTGGACTACATCTCTCTATGGCAGGAGCA
GTGAAAGCTTTCTAGACCAT

BS04561.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1038 CG3827-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 118..1155 17..1054 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396177..397214 17..1054 5190 100 Plus
Blast to na_te.dros performed 2014-11-27 20:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 674..845 150 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 671..846 136 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 674..755 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 671..702 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 671..845 124 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 615..726 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 673..755 121 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 671..745 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 671..843 116 59.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 640..707 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1073..1121 671..719 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 640..707 110 66.7 Plus

BS04561.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:27 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:26 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..1158 11..1060 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:28 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 118..1154 17..1053 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:28 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..1158 11..1060 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:43 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 118..1154 17..1053 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:43 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
X 396177..397213 17..1053 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:28 Download gff for BS04561.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 290210..291246 17..1053 100   Plus

BS04561.pep Sequence

Translation from 16 to 1053

> BS04561.pep
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQ*

BS04561.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
sc-PA 345 CG3827-PA 1..345 1..345 1800 100 Plus
l(1)sc-PA 257 CG3839-PA 77..257 92..345 309 38.2 Plus
ac-PA 201 CG3796-PA 25..199 100..344 264 35.2 Plus
ase-PA 486 CG3258-PA 130..268 69..198 210 41.4 Plus