Clone Sequence Records
BS04561.3prime Sequence
925 bp (783 high quality bases) assembled on 2005-12-01
> BS04561.3prime
ATGGTCTAGAAAGCTTTCACTGCTCCTGCCATAGAGAGATGTAGTCCAAA
ATCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTC
GTACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGT
CCAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCT
TCGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGG
CGAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTC
CACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTC
AGCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAG
AGGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAAC
TGCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGT
TGAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAG
GTCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCA
GTGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTT
GTCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAA
GCTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTT
GGACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGC
GATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGG
TGTATACTTGCGAGTCTTAATTGGGATTGTGCCAGCGGGTTGATTTTGAT
TGCCCCCGGGGAATAATGGACTAGG
BS04561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 130..1038 | 925..17 | 4445 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 247..1155 | 925..17 | 4485 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396306..397214 | 925..17 | 4485 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-02 19:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 397..226 | 150 | 57.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 400..225 | 136 | 57.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 397..316 | 133 | 65.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 400..226 | 124 | 59.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 400..369 | 124 | 87.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 456..345 | 122 | 58.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 398..316 | 121 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 400..326 | 117 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 400..228 | 116 | 59.6 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 431..364 | 110 | 66.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 400..352 | 110 | 69.4 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 431..364 | 110 | 66.7 | Minus |
BS04561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:51:53 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:23 Download gff for
BS04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 130..1038 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:03 Download gff for
BS04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 247..1158 | 11..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:06 Download gff for
BS04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 247..1158 | 11..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:06 Download gff for
BS04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396306..397217 | 11..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:03 Download gff for
BS04561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290339..291250 | 11..925 | 99 | | Minus |
BS04561.5prime Sequence
800 bp (704 high quality bases) assembled on 2005-12-01
> BS04561.5prime
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCCCCAGCAAAA
BS04561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 1..784 | 17..800 | 3895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 118..901 | 17..800 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396177..396960 | 17..800 | 3905 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 11:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2391 | 674..726 | 136 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 674..755 | 133 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 671..702 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6824 | 671..726 | 123 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 615..726 | 122 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 673..755 | 121 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 671..745 | 117 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6779 | 671..726 | 115 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6800 | 671..726 | 115 | 69.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 640..707 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 671..719 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 640..707 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1176 | 671..743 | 107 | 64.4 | Plus |
BS04561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:51:54 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:25 Download gff for
BS04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:46 Download gff for
BS04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..897 | 11..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:43 Download gff for
BS04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..897 | 11..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:43 Download gff for
BS04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396173..396956 | 11..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:46 Download gff for
BS04561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290206..290989 | 11..796 | 99 | | Plus |
BS04561.complete Sequence
1070 bp (1070 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634970
> BS04561.complete
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTACGAAGGAGTTCCCCAACAAATATCCACCCACCT
GGATCGTCTGGATCATCTGGACAACGAATTACACACGCACTCCCAACTTC
AGCTAAAATTTGAACCGTACGAACATTTTCAATTAGACGAGGAGGACTGC
ACCCCCGACGACGAGGAGATTTTGGACTACATCTCTCTATGGCAGGAGCA
GTGAAAGCTTTCTAGACCAT
BS04561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1038 | CG3827-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 118..1155 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396177..397214 | 17..1054 | 5190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 674..845 | 150 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 671..846 | 136 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 674..755 | 133 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 671..702 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 671..845 | 124 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 615..726 | 122 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 673..755 | 121 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 671..745 | 117 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 671..843 | 116 | 59.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 640..707 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 671..719 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 640..707 | 110 | 66.7 | Plus |
BS04561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:27 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:26 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..1158 | 11..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:28 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 118..1154 | 17..1053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:28 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..1158 | 11..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:43 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 118..1154 | 17..1053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:43 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396177..397213 | 17..1053 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:28 Download gff for
BS04561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290210..291246 | 17..1053 | 100 | | Plus |
BS04561.pep Sequence
Translation from 16 to 1053
> BS04561.pep
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQ*
BS04561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-PA | 345 | CG3827-PA | 1..345 | 1..345 | 1800 | 100 | Plus |
l(1)sc-PA | 257 | CG3839-PA | 77..257 | 92..345 | 309 | 38.2 | Plus |
ac-PA | 201 | CG3796-PA | 25..199 | 100..344 | 264 | 35.2 | Plus |
ase-PA | 486 | CG3258-PA | 130..268 | 69..198 | 210 | 41.4 | Plus |