Clone Sequence Records
BS04562.3prime Sequence
935 bp (814 high quality bases) assembled on 2005-12-01
> BS04562.3prime
ATGGTCTAGAAAGCTTTCAATGGGTGACCGATGGGGCTAGGCCTGTAGCT
GCTGCTGGGTGGTGCAAGTGGTGGTGATGGTGATGGTGGTACGTCAGCGT
GGGCGGTGGTGGTGGAGGCGGTGGATGGCCAGGGGGCGCGGCCACTGTCG
GCGCAGTGGATCCTCCGGCAGTGGCAAATCCACCTGCTACCGCCATTTGT
TGCTCGTAGCTGGTGTAGTGATCGTAGTAGCCGCCGTATCCGACTTCCAG
GCCATTTCCGGTTGCAGTATTTCCTGGTGCCGTAGTAGTTCCTGTGTCGA
AATAGCTGACTCCATTATAGCCACTACTGCTCTCGTAGTAGTGATGTCCC
GCTGTCTGATTTCCACCGAACTGTTGGTGGCTCTGCTGCTGCTGGTGGTG
GTGCTGTTGCATTTCGTACTCCGCCTTGGGGCTATAGTAGTAATCGTAGT
TGTCCTCCACATACGGCTGCGTCTCCACGGTGGCATTGTACTTAATGGTG
GGTCCCGGTTCGGCCTTGCAGCTGATCTCCTCCTGACCACCGCCACCACC
CAAATGCTTGATCTGCGAGTAGTTGATGAACTCCGGTTCCGGAGTGGCCA
GTTGCGGGCTGGAATCATAGGCTACTGCCTGGCATTGTGTGTGTCCGTGC
ACGGGAACACCCATCGCAAAGCTGTTCCCGCTGGAGGATTGCTGGTATGC
GGCCAGTTCCGAAATGCTGCAGGCGTAGGGCAAACTGGGAGATTTACTAG
GTGCCGCGGTGGCCGCCGCTGGAGTTGCATGGTAGATGGGATAGTTATAG
GTGATGTGCTGGTGGTTGACCGTAAACACATTAGCTGCCGTCTCGCANGG
TGCCGATGACTCGGATCCCTTAGTGGCCAAGATTTGGTGCCGTAATTTCA
GGATGGTGACAACTGATGGCTCCTCGCCGTGGTGC
BS04562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3858-PA | 1821 | gcm2-RA | 970..1821 | 868..17 | 4241 | 99.8 | Minus |
CG3858-PB | 1842 | gcm2-RB | 991..1842 | 868..17 | 4241 | 99.8 | Minus |
CG3858-PA | 1821 | gcm2-RA | 902..968 | 935..869 | 235 | 94 | Minus |
CG3858-PB | 1842 | gcm2-RB | 923..989 | 935..869 | 235 | 94 | Minus |
CG32397-PA | 5832 | CG32397-RA | 478..509 | 406..375 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 1238..2158 | 935..16 | 4509 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9611616..9612536 | 935..16 | 4484 | 99.3 | Minus |
Blast to na_te.dros performed 2015-02-06 13:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1181 | 418..287 | 180 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7010 | 409..193 | 177 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2662 | 410..69 | 167 | 53.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2856 | 410..24 | 144 | 55.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..7123 | 410..37 | 144 | 55.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2548 | 420..192 | 138 | 56 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6859 | 414..271 | 138 | 60.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2476 | 453..372 | 127 | 63.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1580 | 410..371 | 119 | 77.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1134 | 414..325 | 117 | 62.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2527 | 409..275 | 114 | 59 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6874 | 420..371 | 114 | 71.7 | Minus |
BS04562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:55 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-PB | 923..1842 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:26 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3858-PB | 923..1842 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:59 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1238..2165 | 8..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:54 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1238..2165 | 8..935 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:54 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9611616..9612543 | 8..935 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:59 Download gff for
BS04562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9611616..9612543 | 8..935 | 98 | | Minus |
BS04562.5prime Sequence
870 bp (814 high quality bases) assembled on 2005-12-01
> BS04562.5prime
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGG
BS04562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3858-PA | 1821 | gcm2-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG3858-PB | 1842 | gcm2-RB | 33..875 | 28..870 | 4215 | 100 | Plus |
CG12245-PA | 1515 | gcm-RA | 226..284 | 347..405 | 170 | 91.5 | Plus |
CG12245-PA | 1515 | gcm-RA | 433..470 | 557..594 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 337..1190 | 17..870 | 4270 | 100 | Plus |
gcm-RB | 2173 | CG12245-RB | 288..659 | 256..630 | 375 | 74.8 | Plus |
gcm-RA | 1911 | CG12245-RA | 288..659 | 256..630 | 375 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9610602..9611346 | 28..772 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 771..863 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581198..9581458 | 516..256 | 285 | 73.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:52:01 has no hits.
BS04562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:56 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:27 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3858-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:23:09 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..1190 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:25 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..1190 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:25 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9610600..9611346 | 26..772 | 99 | -> | Plus |
2L | 9611412..9611506 | 773..870 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:23:09 Download gff for
BS04562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9610600..9611346 | 26..772 | 99 | -> | Plus |
arm_2L | 9611412..9611506 | 773..870 | 95 | | Plus |
BS04562.complete Sequence
1853 bp assembled on 2008-01-02
GenBank Submission: KX796964
> BS04562.complete
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGCTACCTGGATGACAGCACCACGGCGAGGAGCCATCAGTTGTCACAAT
CCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCG
GCACCCTGCGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACAT
CACCTATAACTATCCCATCTACCATGCAACTCCAGCGGCGGCCACCGCGG
CACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGCATTTCGGAACTG
GCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCC
CGTGCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGC
AACTGGCCACTCCGGAACCGGAGTTCATCAACTACTCGCAGATCAAGCAT
TTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGCTGCAAGGCCGAACCGGG
ACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGAGG
ACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAATGCAACAG
CACCACCACCAGCAGCAGCAGAGCCACCAACAGTTCGGTGGAAATCAGAC
AGCGGGACATCACTACTACGAGAGCAGTAGTGGCTATAATGGAGTCAGCT
ATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAAT
GGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGA
GCAACAAATGGCGGTAGCAGGTGGATTTGCCACTGCCGGAGGATCCACTG
CGCCGACAGTGGCCGCGCCCCCTGGCCATCCACCGCCTCCACCACCACCG
CCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACCCAGC
AGCAGCTACAGGCCTAGCCCCATCGGTCACCCATTGAAAGCTTTCTAGAC
CAT
BS04562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 1821 | CG3858-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
gcm-RB | 1515 | CG12245-PB | 135..506 | 256..630 | 325 | 73.1 | Plus |
gcm-RA | 1515 | CG12245-PA | 135..506 | 256..630 | 325 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 337..2158 | 17..1838 | 9110 | 100 | Plus |
gcm-RB | 2173 | CG12245-RB | 288..659 | 256..630 | 325 | 73.1 | Plus |
gcm-RA | 1911 | CG12245-RA | 288..659 | 256..630 | 325 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9611561..9612536 | 863..1838 | 4880 | 100 | Plus |
2L | 23513712 | 2L | 9610602..9611346 | 28..772 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 771..863 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581198..9581458 | 516..256 | 285 | 73.9 | Minus |
Blast to na_te.dros performed 2014-11-28 00:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1181 | 1436..1567 | 180 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7010 | 1445..1661 | 177 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2662 | 1444..1785 | 167 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2856 | 1444..1830 | 144 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..7123 | 1444..1817 | 144 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2548 | 1434..1662 | 138 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6859 | 1440..1583 | 138 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2476 | 1401..1482 | 127 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1580 | 1444..1483 | 119 | 77.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1134 | 1440..1529 | 117 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2527 | 1445..1579 | 114 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6874 | 1434..1483 | 114 | 71.7 | Plus |
BS04562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:11 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1..1821 | 17..1837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:45 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 420..2239 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:11 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..2156 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:12 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 420..2248 | 17..1846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:49 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..2156 | 17..1836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:49 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9610602..9611346 | 28..772 | 100 | -> | Plus |
2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
2L | 9611562..9612534 | 864..1836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:11 Download gff for
BS04562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9610602..9611346 | 28..772 | 100 | -> | Plus |
arm_2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
arm_2L | 9611562..9612534 | 864..1836 | 100 | | Plus |
BS04562.pep Sequence
Translation from 16 to 1836
> BS04562.pep
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTH*
BS04562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-PA | 606 | CG3858-PA | 1..606 | 1..606 | 3331 | 100 | Plus |
gcm-PB | 504 | CG12245-PB | 18..230 | 53..260 | 637 | 59.2 | Plus |
gcm-PA | 504 | CG12245-PA | 18..230 | 53..260 | 637 | 59.2 | Plus |