Clone BS04562 Report

Search the DGRC for BS04562

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptgcm2-RA
Protein status:BS04562.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04562.3prime Sequence

935 bp (814 high quality bases) assembled on 2005-12-01

> BS04562.3prime
ATGGTCTAGAAAGCTTTCAATGGGTGACCGATGGGGCTAGGCCTGTAGCT
GCTGCTGGGTGGTGCAAGTGGTGGTGATGGTGATGGTGGTACGTCAGCGT
GGGCGGTGGTGGTGGAGGCGGTGGATGGCCAGGGGGCGCGGCCACTGTCG
GCGCAGTGGATCCTCCGGCAGTGGCAAATCCACCTGCTACCGCCATTTGT
TGCTCGTAGCTGGTGTAGTGATCGTAGTAGCCGCCGTATCCGACTTCCAG
GCCATTTCCGGTTGCAGTATTTCCTGGTGCCGTAGTAGTTCCTGTGTCGA
AATAGCTGACTCCATTATAGCCACTACTGCTCTCGTAGTAGTGATGTCCC
GCTGTCTGATTTCCACCGAACTGTTGGTGGCTCTGCTGCTGCTGGTGGTG
GTGCTGTTGCATTTCGTACTCCGCCTTGGGGCTATAGTAGTAATCGTAGT
TGTCCTCCACATACGGCTGCGTCTCCACGGTGGCATTGTACTTAATGGTG
GGTCCCGGTTCGGCCTTGCAGCTGATCTCCTCCTGACCACCGCCACCACC
CAAATGCTTGATCTGCGAGTAGTTGATGAACTCCGGTTCCGGAGTGGCCA
GTTGCGGGCTGGAATCATAGGCTACTGCCTGGCATTGTGTGTGTCCGTGC
ACGGGAACACCCATCGCAAAGCTGTTCCCGCTGGAGGATTGCTGGTATGC
GGCCAGTTCCGAAATGCTGCAGGCGTAGGGCAAACTGGGAGATTTACTAG
GTGCCGCGGTGGCCGCCGCTGGAGTTGCATGGTAGATGGGATAGTTATAG
GTGATGTGCTGGTGGTTGACCGTAAACACATTAGCTGCCGTCTCGCANGG
TGCCGATGACTCGGATCCCTTAGTGGCCAAGATTTGGTGCCGTAATTTCA
GGATGGTGACAACTGATGGCTCCTCGCCGTGGTGC

BS04562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3858-PA 1821 gcm2-RA 970..1821 868..17 4241 99.8 Minus
CG3858-PB 1842 gcm2-RB 991..1842 868..17 4241 99.8 Minus
CG3858-PA 1821 gcm2-RA 902..968 935..869 235 94 Minus
CG3858-PB 1842 gcm2-RB 923..989 935..869 235 94 Minus
CG32397-PA 5832 CG32397-RA 478..509 406..375 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 1238..2158 935..16 4509 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611616..9612536 935..16 4484 99.3 Minus
Blast to na_te.dros performed 2015-02-06 13:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1181 418..287 180 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7010 409..193 177 59.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2662 410..69 167 53.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2856 410..24 144 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..7123 410..37 144 55.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2548 420..192 138 56 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6859 414..271 138 60.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2393..2476 453..372 127 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1580 410..371 119 77.5 Minus
roo 9092 roo DM_ROO 9092bp 1041..1134 414..325 117 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2527 409..275 114 59 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6874 420..371 114 71.7 Minus

BS04562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:55 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-PB 923..1842 17..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:26 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3858-PB 923..1842 17..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:59 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1238..2165 8..935 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:54 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1238..2165 8..935 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:54 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9611616..9612543 8..935 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:59 Download gff for BS04562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9611616..9612543 8..935 98   Minus

BS04562.5prime Sequence

870 bp (814 high quality bases) assembled on 2005-12-01

> BS04562.5prime
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGG

BS04562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3858-PA 1821 gcm2-RA 1..854 17..870 4270 100 Plus
CG3858-PB 1842 gcm2-RB 33..875 28..870 4215 100 Plus
CG12245-PA 1515 gcm-RA 226..284 347..405 170 91.5 Plus
CG12245-PA 1515 gcm-RA 433..470 557..594 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 337..1190 17..870 4270 100 Plus
gcm-RB 2173 CG12245-RB 288..659 256..630 375 74.8 Plus
gcm-RA 1911 CG12245-RA 288..659 256..630 375 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9610602..9611346 28..772 3725 100 Plus
2L 23513712 2L 9611410..9611502 771..863 465 100 Plus
2L 23513712 2L 9581198..9581458 516..256 285 73.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:52:01 has no hits.

BS04562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:51:56 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:14:27 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3858-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:23:09 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..1190 17..870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:25 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..1190 17..870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:25 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9610600..9611346 26..772 99 -> Plus
2L 9611412..9611506 773..870 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:23:09 Download gff for BS04562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9610600..9611346 26..772 99 -> Plus
arm_2L 9611412..9611506 773..870 95   Plus

BS04562.complete Sequence

1853 bp assembled on 2008-01-02

GenBank Submission: KX796964

> BS04562.complete
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGCTACCTGGATGACAGCACCACGGCGAGGAGCCATCAGTTGTCACAAT
CCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCG
GCACCCTGCGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACAT
CACCTATAACTATCCCATCTACCATGCAACTCCAGCGGCGGCCACCGCGG
CACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGCATTTCGGAACTG
GCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCC
CGTGCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGC
AACTGGCCACTCCGGAACCGGAGTTCATCAACTACTCGCAGATCAAGCAT
TTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGCTGCAAGGCCGAACCGGG
ACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGAGG
ACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAATGCAACAG
CACCACCACCAGCAGCAGCAGAGCCACCAACAGTTCGGTGGAAATCAGAC
AGCGGGACATCACTACTACGAGAGCAGTAGTGGCTATAATGGAGTCAGCT
ATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAAT
GGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGA
GCAACAAATGGCGGTAGCAGGTGGATTTGCCACTGCCGGAGGATCCACTG
CGCCGACAGTGGCCGCGCCCCCTGGCCATCCACCGCCTCCACCACCACCG
CCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACCCAGC
AGCAGCTACAGGCCTAGCCCCATCGGTCACCCATTGAAAGCTTTCTAGAC
CAT

BS04562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 1821 CG3858-PA 1..1821 17..1837 9105 100 Plus
gcm-RB 1515 CG12245-PB 135..506 256..630 325 73.1 Plus
gcm-RA 1515 CG12245-PA 135..506 256..630 325 73.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 337..2158 17..1838 9110 100 Plus
gcm-RB 2173 CG12245-RB 288..659 256..630 325 73.1 Plus
gcm-RA 1911 CG12245-RA 288..659 256..630 325 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611561..9612536 863..1838 4880 100 Plus
2L 23513712 2L 9610602..9611346 28..772 3725 100 Plus
2L 23513712 2L 9611410..9611502 771..863 465 100 Plus
2L 23513712 2L 9581198..9581458 516..256 285 73.9 Minus
Blast to na_te.dros performed 2014-11-28 00:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1181 1436..1567 180 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7010 1445..1661 177 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2662 1444..1785 167 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2856 1444..1830 144 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..7123 1444..1817 144 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2548 1434..1662 138 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6859 1440..1583 138 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2393..2476 1401..1482 127 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1580 1444..1483 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1041..1134 1440..1529 117 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2527 1445..1579 114 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6874 1434..1483 114 71.7 Plus

BS04562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:11 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 17..1837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:45 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 420..2239 17..1836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:11 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..2156 17..1836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:12 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 420..2248 17..1846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:49 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..2156 17..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:49 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9610602..9611346 28..772 100 -> Plus
2L 9611412..9611502 773..863 100 -> Plus
2L 9611562..9612534 864..1836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:11 Download gff for BS04562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9610602..9611346 28..772 100 -> Plus
arm_2L 9611412..9611502 773..863 100 -> Plus
arm_2L 9611562..9612534 864..1836 100   Plus

BS04562.pep Sequence

Translation from 16 to 1836

> BS04562.pep
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTH*

BS04562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-PA 606 CG3858-PA 1..606 1..606 3331 100 Plus
gcm-PB 504 CG12245-PB 18..230 53..260 637 59.2 Plus
gcm-PA 504 CG12245-PA 18..230 53..260 637 59.2 Plus