Clone Sequence Records
BS04591.3prime Sequence
259 bp (201 high quality bases) assembled on 2005-12-01
> BS04591.3prime
ATGGTCTAGAAAGCTTCTAACCTGCTTCACTGTCGCTCGAGTCACTCGAA
CTGCTATCACTCGAACTCGACGACGATGAATCGCTGGAACTGGAACTCGA
CGACACGGGATTCGCCGGCTGCACTGCCTCGACCTTGCTCGAAGCGGACT
CATCTTTCTTGGCGGTTTTCTTGCTTGCCCCCAGTTGGCCGGTGACGTCC
TGCAGGCGCTTCTCCAGTTCCTGCTTTTTCTCGGCCATCTGCTCGTCCTT
CGACTTGCC
BS04591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2252-PA | 3333 | fs(1)h-RA | 3091..3333 | 259..17 | 1215 | 100 | Minus |
CG2252-PC | 3333 | fs(1)h-RC | 3091..3333 | 259..17 | 1215 | 100 | Minus |
CG2252-PD | 3333 | fs(1)h-RD | 3091..3333 | 259..17 | 1215 | 100 | Minus |
CG2252-PE | 3333 | fs(1)h-RE | 3091..3333 | 259..17 | 1215 | 100 | Minus |
CG2252-PB | 6117 | fs(1)h-RB | 3079..3318 | 259..20 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-RI | 8716 | CG2252-RI | 3763..4005 | 259..17 | 1215 | 100 | Minus |
fs(1)h-RH | 9076 | CG2252-RH | 4123..4365 | 259..17 | 1215 | 100 | Minus |
fs(1)h-RF | 5081 | CG2252-RF | 4092..4334 | 259..17 | 1215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8050147..8050285 | 17..155 | 695 | 100 | Plus |
X | 23542271 | X | 8050437..8050542 | 154..259 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:08:19 has no hits.
BS04591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:45 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2252-PA | 3091..3333 | 17..259 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:33 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2252-PE | 3091..3333 | 17..259 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:23 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RF | 4092..4342 | 10..259 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:06 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RF | 4092..4342 | 10..259 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:06 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8050138..8050283 | 10..153 | 97 | <- | Plus |
X | 8050437..8050542 | 154..259 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:23 Download gff for
BS04591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7944171..7944316 | 10..153 | 97 | <- | Plus |
arm_X | 7944470..7944575 | 154..259 | 100 | | Plus |
BS04591.5prime Sequence
248 bp (216 high quality bases) assembled on 2005-12-01
> BS04591.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGC
CACCCGTGGAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCA
GCGGAGCGGCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGAC
GGTGATGAAGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGC
CCGTCGATGCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCA
BS04591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2252-PA | 3333 | fs(1)h-RA | 1..232 | 17..248 | 1160 | 100 | Plus |
CG2252-PB | 6117 | fs(1)h-RB | 1..232 | 17..248 | 1160 | 100 | Plus |
CG2252-PC | 3333 | fs(1)h-RC | 1..232 | 17..248 | 1160 | 100 | Plus |
CG2252-PD | 3333 | fs(1)h-RD | 1..232 | 17..248 | 1160 | 100 | Plus |
CG2252-PE | 3333 | fs(1)h-RE | 1..232 | 17..248 | 1160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-RI | 8716 | CG2252-RI | 657..889 | 16..248 | 1165 | 100 | Plus |
fs(1)h-RH | 9076 | CG2252-RH | 1047..1279 | 16..248 | 1165 | 100 | Plus |
fs(1)h-RG | 9949 | CG2252-RG | 637..869 | 16..248 | 1165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8055196..8055428 | 248..16 | 1165 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1335..1381 | 146..192 | 118 | 72.3 | Plus |
BS04591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:45 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2252-PA | 1..231 | 17..247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:34 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2252-PE | 1..231 | 17..247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:28 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RG | 631..868 | 9..247 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RG | 631..868 | 9..247 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8055197..8055431 | 9..247 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:28 Download gff for
BS04591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7949230..7949464 | 9..247 | 98 | | Minus |
BS04591.complete Sequence
3365 bp assembled on 2010-09-23
GenBank Submission: KX797239
> BS04591.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGC
CACCCGTGGAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCA
GCGGAGCGGCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGAC
GGTGATGAAGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGC
CCGTCGATGCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCAAA
CAACCCATGGACATGGGTACGATCAAGAAGCGGCTGGAGAACAACTACTA
TTGGTCCGCCAAGGAGACCATACAGGACTTCAATACGATGTTCAACAATT
GCTATGTCTACAACAAGCCCGGCGAGGATGTAGTGGTTATGGCCCAGACG
CTCGAGAAGGTCTTCCTGCAGAAGATCGAATCGATGCCTAAGGAGGAGCT
TGAACTGGAGCCGGTCACGGCCAAGGGTGGCAAAAAGAAGCAACGGGCGC
CGGCTACGCCCAAGTCATCGTCGGGTGGCGCTGGAGCATCCACCGGTTCT
GGTACATCCTCGGCAGCAGTTACCAGCGGACCAGGTAGTGGCTCCACCAA
GGTGTCAGTCGCTGCCTCATCCGCACAACAGTCCGGCCTGCAAGGAGCGA
CGGGAGCAGGCGGTGGATCTTCAAGTACACCGGGAACTCAGCCGGGTTCC
GGTGCGGGAGGAGCGATCGCCGCCCGACCCGTATCCGCCATGGGCGGCAC
GGTTTCATCGACGGCCGGCGGTGCACCGTCCATACCACCGATTAGCACAA
TGCCACCGCACACGGTACCCGGCAGCACCAATACGACGACGACAGCGATG
GCTGGCGGCGTTGGTGGGCCAGGTGCAGCTGGAGCCAATCCCAATGCTGC
CGCCCTGATGGCTAGTCTTCTGAATGCGGGCCAAACGGGCGCCTATCCCG
GTGCGCCCGGCCAGACGGCGGTCAATAGCTCCTCGCTTCTAGATGGCAGT
ACAGCCGCAGTAGCGGCGGCAGCAGCAGCGGCTGCGGCGGCGGCGGCGGC
GGCAGGAGGTGCAGCGGGAGCCGCTGGAGGAGCAGGGACAATACCAGCAG
TTGCCGTCAATGCCGCTAACGCCGTTCAGGCCTATGTGAATGCGGGCGTG
AGCGTCGGAGTGGACGCCGTGATACCGCCTCAGCAGCCCGCCAAAATAAA
GAAGGGTGTCAAACGGAAGGCGGACACAACAACGCCGACGGCCAATGCCT
TTGAATCCCCGTACACGCAAATGGACTCCAAATCGGCCAAGATTGCGACG
CGGCGGGAGTCGAATCGTCAGGATCTTACATTCCAGGGCTCGGGATACAA
TATGTCGCCGCTAGGCGTCTCCGGAGTGCCCGGACTTGGCGGTCTAGTTG
CCGGCGGCGTGGCTGGTGTTGCGGTGGCCAAGAACAAGGAGAAGCTGTCG
GATGCGCTCAAGTCGTGCAACGAAATCCTCAAGGAGCTCTTCTCGAAGAA
GCACTCGGGCTATGCTTGGCCATTCTACAAGCCAGTGGACGCGGAAATGC
TTGGCCTGCATGACTACCACGACATCATCAAGAAACCAATGGATCTGGGC
ACAGTCAAGCGGAAAATGGACAATCGCGAGTACAAGAGCGCGCCGGAATT
TGCCGCCGACGTGCGATTAATATTCACCAACTGCTACAAGTACAATCCGC
CAGATCATGATGTTGTGGCCATGGGTCGCAAGCTGCAAGACGTATTTGAG
ATGCGCTATGCCAACATCCCCGATGAGCCGGTAGCCAATGCGGCCCACCA
TCACGGACATGGCCACGGGCATGGTCATGGCCATGGCCACGGTCACGGGC
ATGGTCACGGACATGGTCATGGTCACGGATACGGCGGCTCCTCCTCACTC
AAGCACGATGCCAGCGATTCGTCCAGCGAGGACTCCAGCGATACCGAAAA
CGAATCCAACTCGGATGAGGAGCGGAGCGCTAGGCTGAAGATGCTCGAGT
CCAAGCTGCTCGGTCTGCAGGAGGAGATCCGTAAGCTGTCAGAGGAGGCC
TCCGCCAAAAAGAAGGCGAAGAAAAAACTCAAGGAAAAGAAAAAGTCAAT
AGGCGGCGGATCAGGCTCTGGTTCGGCTTCGCACCATTGTCACGCCACGG
GCGGCGGTGCAAATGCTGGCGGAGCAGGCGGTCCCGGATCAGGCGGCCAT
GGGAGCGTTTCCGTGCCAGGCGGTGTCGGGTCCTTGGGTCCCGGTGGAGC
GGGCGGCGCTAATCTCAACGCGCTGCTCGGTGGCTCATTGGTTGGCCATG
GCGGAGCGGCCGTCGCAGGAGGCGTTCCCAATGTGGGTGCGTTGCACAGC
CAGGTTCACGACGTGGCCATGGCCTTTAGCCAGATGGCGGGCGGCGGTGC
CGCGGCCGGTGCTGGCTTTGGTGCCGGTGTGACAGCAGCAGGAGCATCGT
CGGGCGGCAAGGCGGGCACACTGGCCGGCGCTCTGGCAGCGGGCGCAGCG
GCAGGTGCCGGCGGTACGACGGCTGGCAGCGGCAGCAGTAAAGGTGCTAA
GAGCAAGGGCGGACGTGGCGCAAAGGGCAGCGGAGCCGGCGGCGTTGGTG
CCAGCAATAATGCCGCTGCGGGCAATGCGGCTGGTGGCGCAGCGGGAGCT
GCAGCGGGCGCTGGATCTGTTGGAGGTGTTGGCGGTGCAGGAGCAGCGGG
CGGCGGCAATGCCTCCAAGCGGGCCAAGGGCAGCAGTTCGGCGGGCGCTG
GCGGTGGTGTTGGTGGCGCGAATGCCAGCGCCGGTGGCGCCGGCGCACGC
GGCAGCAGCAAGAAGAAGCCTAGCCAGGTGATGAACTTTGACTCCGAGGA
GGAGGACACGGCCAAGCCAATGTCGTACGATGAGAAGCGCCAGTTGTCGC
TCGACATCAACAAGTTGCCAGGGGACAAGCTGGGCCGTGTGGTTCACATT
ATCCAGAATCGGGAGCCATCGCTGCGTGACTCCAATCCCGATGAAATAGA
GATCGACTTCGAGACGCTGAAGCCGTCGACGCTGCGCGAGCTAGAAAGCT
ATGTGGCGTCGTGTTTGCGCAAAAAAACACGTAAGCCATATTATAAAAAG
CCTTCTGGCAAGTCGAAGGACGAGCAGATGGCCGAGAAAAAGCAGGAACT
GGAGAAGCGCCTGCAGGACGTCACCGGCCAACTGGGGGCAAGCAAGAAAA
CCGCCAAGAAAGATGAGTCCGCTTCGAGCAAGGTCGAGGCAGTGCAGCCG
GCGAATCCCGTGTCGTCGAGTTCCAGTTCCAGCGATTCATCGTCGTCGAG
TTCGAGTGATAGCAGTTCGAGTGACTCGAGCGACAGTGAAGCAGGTTAGA
AGCTTTCTAGACCAT
BS04591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-RF | 3333 | CG2252-PF | 1..3333 | 17..3349 | 16665 | 100 | Plus |
fs(1)h-RE | 3333 | CG2252-PE | 1..3333 | 17..3349 | 16665 | 100 | Plus |
fs(1)h-RD | 3333 | CG2252-PD | 1..3333 | 17..3349 | 16665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-RF | 5081 | CG2252-RF | 1001..4334 | 16..3349 | 16670 | 100 | Plus |
fs(1)h-RE | 8773 | CG2252-RE | 729..4062 | 16..3349 | 16670 | 100 | Plus |
fs(1)h-RD | 9071 | CG2252-RD | 1027..4360 | 16..3349 | 16670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8051694..8053297 | 2922..1319 | 8020 | 100 | Minus |
X | 23542271 | X | 8054122..8055428 | 1322..16 | 6535 | 100 | Minus |
X | 23542271 | X | 8051355..8051532 | 3096..2919 | 875 | 99.4 | Minus |
X | 23542271 | X | 8050147..8050285 | 3349..3211 | 695 | 100 | Minus |
X | 23542271 | X | 8050437..8050556 | 3212..3093 | 600 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1335..1381 | 146..192 | 118 | 72.3 | Plus |
BS04591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 17:04:36 Download gff for
BS04591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RD | 984..4316 | 17..3349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:21 Download gff for
BS04591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RD | 1028..4360 | 17..3349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:54 Download gff for
BS04591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fs(1)h-RD | 1028..4360 | 17..3349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:54 Download gff for
BS04591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8050147..8050283 | 3213..3349 | 100 | <- | Minus |
X | 8050437..8050556 | 3093..3212 | 100 | <- | Minus |
X | 8051359..8051529 | 2922..3092 | 100 | <- | Minus |
X | 8051695..8053294 | 1322..2921 | 100 | <- | Minus |
X | 8054123..8055427 | 17..1321 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:21 Download gff for
BS04591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7944180..7944316 | 3213..3349 | 100 | <- | Minus |
arm_X | 7944470..7944589 | 3093..3212 | 100 | <- | Minus |
arm_X | 7945392..7945562 | 2922..3092 | 100 | <- | Minus |
arm_X | 7945728..7947327 | 1322..2921 | 100 | <- | Minus |
arm_X | 7948156..7949460 | 17..1321 | 100 | | Minus |
BS04591.pep Sequence
Translation from 16 to 3348
> BS04591.pep
MSSSEPPPRYEPPVEPVNGIVQPPVIPPAERPGRNTNQLQYLIKTVMKVI
WKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKE
TIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPV
TAKGGKKKQRAPATPKSSSGGAGASTGSGTSSAAVTSGPGSGSTKVSVAA
SSAQQSGLQGATGAGGGSSSTPGTQPGSGAGGAIAARPVSAMGGTVSSTA
GGAPSIPPISTMPPHTVPGSTNTTTTAMAGGVGGPGAAGANPNAAALMAS
LLNAGQTGAYPGAPGQTAVNSSSLLDGSTAAVAAAAAAAAAAAAAAGGAA
GAAGGAGTIPAVAVNAANAVQAYVNAGVSVGVDAVIPPQQPAKIKKGVKR
KADTTTPTANAFESPYTQMDSKSAKIATRRESNRQDLTFQGSGYNMSPLG
VSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSKKHSGYA
WPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVR
LIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGH
GHGHGHGHGHGHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSD
EERSARLKMLESKLLGLQEEIRKLSEEASAKKKAKKKLKEKKKSIGGGSG
SGSASHHCHATGGGANAGGAGGPGSGGHGSVSVPGGVGSLGPGGAGGANL
NALLGGSLVGHGGAAVAGGVPNVGALHSQVHDVAMAFSQMAGGGAAAGAG
FGAGVTAAGASSGGKAGTLAGALAAGAAAGAGGTTAGSGSSKGAKSKGGR
GAKGSGAGGVGASNNAAAGNAAGGAAGAAAGAGSVGGVGGAGAAGGGNAS
KRAKGSSSAGAGGGVGGANASAGGAGARGSSKKKPSQVMNFDSEEEDTAK
PMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFET
LKPSTLRELESYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQ
DVTGQLGASKKTAKKDESASSKVEAVQPANPVSSSSSSSDSSSSSSSDSS
SSDSSDSEAG*
BS04591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fs(1)h-PF | 1110 | CG2252-PF | 1..1110 | 1..1110 | 5699 | 100 | Plus |
fs(1)h-PE | 1110 | CG2252-PE | 1..1110 | 1..1110 | 5699 | 100 | Plus |
fs(1)h-PD | 1110 | CG2252-PD | 1..1110 | 1..1110 | 5699 | 100 | Plus |
fs(1)h-PC | 1110 | CG2252-PC | 1..1110 | 1..1110 | 5699 | 100 | Plus |
fs(1)h-PA | 1110 | CG2252-PA | 1..1110 | 1..1110 | 5699 | 100 | Plus |