Clone BS04591 Report

Search the DGRC for BS04591

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:45
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptfs(1)h-RA
Protein status:BS04591.pep: full length peptide match
Sequenced Size:3365

Clone Sequence Records

BS04591.3prime Sequence

259 bp (201 high quality bases) assembled on 2005-12-01

> BS04591.3prime
ATGGTCTAGAAAGCTTCTAACCTGCTTCACTGTCGCTCGAGTCACTCGAA
CTGCTATCACTCGAACTCGACGACGATGAATCGCTGGAACTGGAACTCGA
CGACACGGGATTCGCCGGCTGCACTGCCTCGACCTTGCTCGAAGCGGACT
CATCTTTCTTGGCGGTTTTCTTGCTTGCCCCCAGTTGGCCGGTGACGTCC
TGCAGGCGCTTCTCCAGTTCCTGCTTTTTCTCGGCCATCTGCTCGTCCTT
CGACTTGCC

BS04591.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2252-PA 3333 fs(1)h-RA 3091..3333 259..17 1215 100 Minus
CG2252-PC 3333 fs(1)h-RC 3091..3333 259..17 1215 100 Minus
CG2252-PD 3333 fs(1)h-RD 3091..3333 259..17 1215 100 Minus
CG2252-PE 3333 fs(1)h-RE 3091..3333 259..17 1215 100 Minus
CG2252-PB 6117 fs(1)h-RB 3079..3318 259..20 1200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-RI 8716 CG2252-RI 3763..4005 259..17 1215 100 Minus
fs(1)h-RH 9076 CG2252-RH 4123..4365 259..17 1215 100 Minus
fs(1)h-RF 5081 CG2252-RF 4092..4334 259..17 1215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8050147..8050285 17..155 695 100 Plus
X 23542271 X 8050437..8050542 154..259 530 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:08:19 has no hits.

BS04591.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:45 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2252-PA 3091..3333 17..259 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:33 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2252-PE 3091..3333 17..259 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:23 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RF 4092..4342 10..259 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:06 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RF 4092..4342 10..259 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:06 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8050138..8050283 10..153 97 <- Plus
X 8050437..8050542 154..259 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:23 Download gff for BS04591.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7944171..7944316 10..153 97 <- Plus
arm_X 7944470..7944575 154..259 100   Plus

BS04591.5prime Sequence

248 bp (216 high quality bases) assembled on 2005-12-01

> BS04591.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGC
CACCCGTGGAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCA
GCGGAGCGGCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGAC
GGTGATGAAGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGC
CCGTCGATGCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCA

BS04591.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2252-PA 3333 fs(1)h-RA 1..232 17..248 1160 100 Plus
CG2252-PB 6117 fs(1)h-RB 1..232 17..248 1160 100 Plus
CG2252-PC 3333 fs(1)h-RC 1..232 17..248 1160 100 Plus
CG2252-PD 3333 fs(1)h-RD 1..232 17..248 1160 100 Plus
CG2252-PE 3333 fs(1)h-RE 1..232 17..248 1160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-RI 8716 CG2252-RI 657..889 16..248 1165 100 Plus
fs(1)h-RH 9076 CG2252-RH 1047..1279 16..248 1165 100 Plus
fs(1)h-RG 9949 CG2252-RG 637..869 16..248 1165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8055196..8055428 248..16 1165 100 Minus
Blast to na_te.dros performed 2015-02-10 15:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1335..1381 146..192 118 72.3 Plus

BS04591.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:45 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2252-PA 1..231 17..247 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:34 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2252-PE 1..231 17..247 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:28 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RG 631..868 9..247 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RG 631..868 9..247 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8055197..8055431 9..247 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:28 Download gff for BS04591.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7949230..7949464 9..247 98   Minus

BS04591.complete Sequence

3365 bp assembled on 2010-09-23

GenBank Submission: KX797239

> BS04591.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGC
CACCCGTGGAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCA
GCGGAGCGGCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGAC
GGTGATGAAGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGC
CCGTCGATGCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCAAA
CAACCCATGGACATGGGTACGATCAAGAAGCGGCTGGAGAACAACTACTA
TTGGTCCGCCAAGGAGACCATACAGGACTTCAATACGATGTTCAACAATT
GCTATGTCTACAACAAGCCCGGCGAGGATGTAGTGGTTATGGCCCAGACG
CTCGAGAAGGTCTTCCTGCAGAAGATCGAATCGATGCCTAAGGAGGAGCT
TGAACTGGAGCCGGTCACGGCCAAGGGTGGCAAAAAGAAGCAACGGGCGC
CGGCTACGCCCAAGTCATCGTCGGGTGGCGCTGGAGCATCCACCGGTTCT
GGTACATCCTCGGCAGCAGTTACCAGCGGACCAGGTAGTGGCTCCACCAA
GGTGTCAGTCGCTGCCTCATCCGCACAACAGTCCGGCCTGCAAGGAGCGA
CGGGAGCAGGCGGTGGATCTTCAAGTACACCGGGAACTCAGCCGGGTTCC
GGTGCGGGAGGAGCGATCGCCGCCCGACCCGTATCCGCCATGGGCGGCAC
GGTTTCATCGACGGCCGGCGGTGCACCGTCCATACCACCGATTAGCACAA
TGCCACCGCACACGGTACCCGGCAGCACCAATACGACGACGACAGCGATG
GCTGGCGGCGTTGGTGGGCCAGGTGCAGCTGGAGCCAATCCCAATGCTGC
CGCCCTGATGGCTAGTCTTCTGAATGCGGGCCAAACGGGCGCCTATCCCG
GTGCGCCCGGCCAGACGGCGGTCAATAGCTCCTCGCTTCTAGATGGCAGT
ACAGCCGCAGTAGCGGCGGCAGCAGCAGCGGCTGCGGCGGCGGCGGCGGC
GGCAGGAGGTGCAGCGGGAGCCGCTGGAGGAGCAGGGACAATACCAGCAG
TTGCCGTCAATGCCGCTAACGCCGTTCAGGCCTATGTGAATGCGGGCGTG
AGCGTCGGAGTGGACGCCGTGATACCGCCTCAGCAGCCCGCCAAAATAAA
GAAGGGTGTCAAACGGAAGGCGGACACAACAACGCCGACGGCCAATGCCT
TTGAATCCCCGTACACGCAAATGGACTCCAAATCGGCCAAGATTGCGACG
CGGCGGGAGTCGAATCGTCAGGATCTTACATTCCAGGGCTCGGGATACAA
TATGTCGCCGCTAGGCGTCTCCGGAGTGCCCGGACTTGGCGGTCTAGTTG
CCGGCGGCGTGGCTGGTGTTGCGGTGGCCAAGAACAAGGAGAAGCTGTCG
GATGCGCTCAAGTCGTGCAACGAAATCCTCAAGGAGCTCTTCTCGAAGAA
GCACTCGGGCTATGCTTGGCCATTCTACAAGCCAGTGGACGCGGAAATGC
TTGGCCTGCATGACTACCACGACATCATCAAGAAACCAATGGATCTGGGC
ACAGTCAAGCGGAAAATGGACAATCGCGAGTACAAGAGCGCGCCGGAATT
TGCCGCCGACGTGCGATTAATATTCACCAACTGCTACAAGTACAATCCGC
CAGATCATGATGTTGTGGCCATGGGTCGCAAGCTGCAAGACGTATTTGAG
ATGCGCTATGCCAACATCCCCGATGAGCCGGTAGCCAATGCGGCCCACCA
TCACGGACATGGCCACGGGCATGGTCATGGCCATGGCCACGGTCACGGGC
ATGGTCACGGACATGGTCATGGTCACGGATACGGCGGCTCCTCCTCACTC
AAGCACGATGCCAGCGATTCGTCCAGCGAGGACTCCAGCGATACCGAAAA
CGAATCCAACTCGGATGAGGAGCGGAGCGCTAGGCTGAAGATGCTCGAGT
CCAAGCTGCTCGGTCTGCAGGAGGAGATCCGTAAGCTGTCAGAGGAGGCC
TCCGCCAAAAAGAAGGCGAAGAAAAAACTCAAGGAAAAGAAAAAGTCAAT
AGGCGGCGGATCAGGCTCTGGTTCGGCTTCGCACCATTGTCACGCCACGG
GCGGCGGTGCAAATGCTGGCGGAGCAGGCGGTCCCGGATCAGGCGGCCAT
GGGAGCGTTTCCGTGCCAGGCGGTGTCGGGTCCTTGGGTCCCGGTGGAGC
GGGCGGCGCTAATCTCAACGCGCTGCTCGGTGGCTCATTGGTTGGCCATG
GCGGAGCGGCCGTCGCAGGAGGCGTTCCCAATGTGGGTGCGTTGCACAGC
CAGGTTCACGACGTGGCCATGGCCTTTAGCCAGATGGCGGGCGGCGGTGC
CGCGGCCGGTGCTGGCTTTGGTGCCGGTGTGACAGCAGCAGGAGCATCGT
CGGGCGGCAAGGCGGGCACACTGGCCGGCGCTCTGGCAGCGGGCGCAGCG
GCAGGTGCCGGCGGTACGACGGCTGGCAGCGGCAGCAGTAAAGGTGCTAA
GAGCAAGGGCGGACGTGGCGCAAAGGGCAGCGGAGCCGGCGGCGTTGGTG
CCAGCAATAATGCCGCTGCGGGCAATGCGGCTGGTGGCGCAGCGGGAGCT
GCAGCGGGCGCTGGATCTGTTGGAGGTGTTGGCGGTGCAGGAGCAGCGGG
CGGCGGCAATGCCTCCAAGCGGGCCAAGGGCAGCAGTTCGGCGGGCGCTG
GCGGTGGTGTTGGTGGCGCGAATGCCAGCGCCGGTGGCGCCGGCGCACGC
GGCAGCAGCAAGAAGAAGCCTAGCCAGGTGATGAACTTTGACTCCGAGGA
GGAGGACACGGCCAAGCCAATGTCGTACGATGAGAAGCGCCAGTTGTCGC
TCGACATCAACAAGTTGCCAGGGGACAAGCTGGGCCGTGTGGTTCACATT
ATCCAGAATCGGGAGCCATCGCTGCGTGACTCCAATCCCGATGAAATAGA
GATCGACTTCGAGACGCTGAAGCCGTCGACGCTGCGCGAGCTAGAAAGCT
ATGTGGCGTCGTGTTTGCGCAAAAAAACACGTAAGCCATATTATAAAAAG
CCTTCTGGCAAGTCGAAGGACGAGCAGATGGCCGAGAAAAAGCAGGAACT
GGAGAAGCGCCTGCAGGACGTCACCGGCCAACTGGGGGCAAGCAAGAAAA
CCGCCAAGAAAGATGAGTCCGCTTCGAGCAAGGTCGAGGCAGTGCAGCCG
GCGAATCCCGTGTCGTCGAGTTCCAGTTCCAGCGATTCATCGTCGTCGAG
TTCGAGTGATAGCAGTTCGAGTGACTCGAGCGACAGTGAAGCAGGTTAGA
AGCTTTCTAGACCAT

BS04591.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-RF 3333 CG2252-PF 1..3333 17..3349 16665 100 Plus
fs(1)h-RE 3333 CG2252-PE 1..3333 17..3349 16665 100 Plus
fs(1)h-RD 3333 CG2252-PD 1..3333 17..3349 16665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-RF 5081 CG2252-RF 1001..4334 16..3349 16670 100 Plus
fs(1)h-RE 8773 CG2252-RE 729..4062 16..3349 16670 100 Plus
fs(1)h-RD 9071 CG2252-RD 1027..4360 16..3349 16670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8051694..8053297 2922..1319 8020 100 Minus
X 23542271 X 8054122..8055428 1322..16 6535 100 Minus
X 23542271 X 8051355..8051532 3096..2919 875 99.4 Minus
X 23542271 X 8050147..8050285 3349..3211 695 100 Minus
X 23542271 X 8050437..8050556 3212..3093 600 100 Minus
Blast to na_te.dros performed 2014-11-28 08:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1335..1381 146..192 118 72.3 Plus

BS04591.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 17:04:36 Download gff for BS04591.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RD 984..4316 17..3349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:21 Download gff for BS04591.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RD 1028..4360 17..3349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:54 Download gff for BS04591.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)h-RD 1028..4360 17..3349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:54 Download gff for BS04591.complete
Subject Subject Range Query Range Percent Splice Strand
X 8050147..8050283 3213..3349 100 <- Minus
X 8050437..8050556 3093..3212 100 <- Minus
X 8051359..8051529 2922..3092 100 <- Minus
X 8051695..8053294 1322..2921 100 <- Minus
X 8054123..8055427 17..1321 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:21 Download gff for BS04591.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7944180..7944316 3213..3349 100 <- Minus
arm_X 7944470..7944589 3093..3212 100 <- Minus
arm_X 7945392..7945562 2922..3092 100 <- Minus
arm_X 7945728..7947327 1322..2921 100 <- Minus
arm_X 7948156..7949460 17..1321 100   Minus

BS04591.pep Sequence

Translation from 16 to 3348

> BS04591.pep
MSSSEPPPRYEPPVEPVNGIVQPPVIPPAERPGRNTNQLQYLIKTVMKVI
WKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKE
TIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPV
TAKGGKKKQRAPATPKSSSGGAGASTGSGTSSAAVTSGPGSGSTKVSVAA
SSAQQSGLQGATGAGGGSSSTPGTQPGSGAGGAIAARPVSAMGGTVSSTA
GGAPSIPPISTMPPHTVPGSTNTTTTAMAGGVGGPGAAGANPNAAALMAS
LLNAGQTGAYPGAPGQTAVNSSSLLDGSTAAVAAAAAAAAAAAAAAGGAA
GAAGGAGTIPAVAVNAANAVQAYVNAGVSVGVDAVIPPQQPAKIKKGVKR
KADTTTPTANAFESPYTQMDSKSAKIATRRESNRQDLTFQGSGYNMSPLG
VSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSKKHSGYA
WPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVR
LIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGH
GHGHGHGHGHGHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSD
EERSARLKMLESKLLGLQEEIRKLSEEASAKKKAKKKLKEKKKSIGGGSG
SGSASHHCHATGGGANAGGAGGPGSGGHGSVSVPGGVGSLGPGGAGGANL
NALLGGSLVGHGGAAVAGGVPNVGALHSQVHDVAMAFSQMAGGGAAAGAG
FGAGVTAAGASSGGKAGTLAGALAAGAAAGAGGTTAGSGSSKGAKSKGGR
GAKGSGAGGVGASNNAAAGNAAGGAAGAAAGAGSVGGVGGAGAAGGGNAS
KRAKGSSSAGAGGGVGGANASAGGAGARGSSKKKPSQVMNFDSEEEDTAK
PMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFET
LKPSTLRELESYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQ
DVTGQLGASKKTAKKDESASSKVEAVQPANPVSSSSSSSDSSSSSSSDSS
SSDSSDSEAG*

BS04591.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)h-PF 1110 CG2252-PF 1..1110 1..1110 5699 100 Plus
fs(1)h-PE 1110 CG2252-PE 1..1110 1..1110 5699 100 Plus
fs(1)h-PD 1110 CG2252-PD 1..1110 1..1110 5699 100 Plus
fs(1)h-PC 1110 CG2252-PC 1..1110 1..1110 5699 100 Plus
fs(1)h-PA 1110 CG2252-PA 1..1110 1..1110 5699 100 Plus