Clone BS04601 Report

Search the DGRC for BS04601

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG16884-RA
Protein status:BS04601.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04601.3prime Sequence

856 bp (742 high quality bases) assembled on 2005-09-08

> BS04601.3prime
ATGGTCTAGAAAGCTTTTACTTGTGGTAACCACGGTGGTCGGAGTAGACG
GTGGCATCGTGGCCAATGGCGCTAACAGGGTAGCTGCTGACGGCAACGGT
GGGTGCGTGCTTGACCACGGAGTGGGACACCACGGGCACCTTCACGTAGA
CGGGGTAGGGACGATCCACATGCACGGGCACCTGGACATTGACGGCCTTC
TCCACGTAGACAGGGTAGGGCTTGGCCACTGGCACGGGGTAGGGCCTGGG
CACCTCAACGGGCACTGGGCGATCGACGGGCACATGGACGGGCACCTTCT
CGTGACGGATCACTTCGTAGGGCTGGGGCACTGGCACGGGCACCTTGACG
TACTCCTTAACGGTCACGGGCACCTTGCGGATGACTTCGTAGGGCTGGGG
CACGGGCACCTTAACTTCGACGGGCACGCGCTTCTCATGGACGACGGGAT
AGGGGCGGTCCACATGCACGGGCACTGGGATTCCCTTGGTGATGGTGATG
GTCTTGTGCACATCGGCCTGCTTGCTGATCACATAGGGGGCGGGAGCGTG
GTGGACAGCGACGGCGGGAGCAGTGTGTCCAACGGCGATCGCGGGACCAC
TGTGGCCCACGGCGACGGCAGCGGGTGCGGAGTATCCGGTCAGTCCGTAG
CCATGTCCGTAGCTTCCGTGGCCGGAGATGGAACCATGTCCCAGGTAGCC
GGTGTCCAGACCAGCATGACCGTAGCCGTAGCCCAGATCGAGCAGGCCGC
GCTTGTCCAGCTTCTTCTCCAGCGGCACCTTCTCACCCTCGGTTTTGCTG
GCGCAGGCGGAGGCCACCAGCAGAGCGGCTAAGCAGATGAATACTTTCAT
GTCGAC

BS04601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 834 CG16884-RA 1..834 850..17 4145 99.8 Minus
CG30101-PA 987 CG30101-RA 409..440 415..384 160 100 Minus
CG30101-PA 987 CG30101-RA 472..498 334..308 135 100 Minus
CG16885-PB 471 CG16885-RB 334..360 415..389 135 100 Minus
CG16885-PA 813 CG16885-RA 334..360 415..389 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..940 850..17 4155 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945229..13946050 17..838 4095 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 18:58:38 has no hits.

BS04601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:51 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:41 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:59 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 100..942 13..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:26 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 100..942 13..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:26 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13945227..13946050 13..838 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:59 Download gff for BS04601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945227..13946050 13..838 99 <- Plus

BS04601.5prime Sequence

861 bp (844 high quality bases) assembled on 2005-12-02

> BS04601.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGTAA
AAGCTTTCTAG

BS04601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 834 CG16884-RA 1..834 17..850 4170 100 Plus
CG30101-PA 987 CG30101-RA 409..440 452..483 160 100 Plus
CG30101-PA 987 CG30101-RA 472..498 533..559 135 100 Plus
CG16885-PB 471 CG16885-RB 334..360 452..478 135 100 Plus
CG16885-PA 813 CG16885-RA 334..360 452..478 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..940 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945229..13946050 850..29 4110 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:11:48 has no hits.

BS04601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:52 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:43 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:10:21 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 5..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:22 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 5..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:22 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13945227..13946050 29..854 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:10:21 Download gff for BS04601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945227..13946050 29..854 99 <- Minus

BS04601.complete Sequence

866 bp (866 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634971

> BS04601.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGTAA
AAGCTTTCTAGACCAT

BS04601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 834 CG16884-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..940 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945229..13946050 850..29 4110 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:57 has no hits.

BS04601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:20 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:36 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 93..940 5..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:31 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 107..938 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:21 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 93..940 5..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:04 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 107..938 17..848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:04 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13945231..13946050 29..848 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:31 Download gff for BS04601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945231..13946050 29..848 100 <- Minus

BS04601.pep Sequence

Translation from 16 to 849

> BS04601.pep
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHK*

BS04601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 277 CG16884-PA 1..277 1..277 1478 100 Plus
CG16885-PA 270 CG16885-PA 9..238 7..272 382 41.8 Plus
CG30101-PA 328 CG30101-PA 1..272 1..258 343 36.9 Plus
CG16886-PB 358 CG16886-PB 66..246 100..262 316 44.6 Plus
CG16886-PA 373 CG16886-PA 66..246 100..262 316 44.6 Plus
CG16886-PB 358 CG16886-PB 135..299 100..259 285 43.8 Plus
CG16886-PB 358 CG16886-PB 151..316 88..250 261 40.6 Plus
CG30101-PA 328 CG30101-PA 180..317 103..248 241 42.9 Plus
CG16886-PB 358 CG16886-PB 182..357 101..265 200 37.8 Plus
CG16886-PB 358 CG16886-PB 73..194 134..264 196 44.2 Plus