Clone Sequence Records
BS04601.3prime Sequence
856 bp (742 high quality bases) assembled on 2005-09-08
> BS04601.3prime
ATGGTCTAGAAAGCTTTTACTTGTGGTAACCACGGTGGTCGGAGTAGACG
GTGGCATCGTGGCCAATGGCGCTAACAGGGTAGCTGCTGACGGCAACGGT
GGGTGCGTGCTTGACCACGGAGTGGGACACCACGGGCACCTTCACGTAGA
CGGGGTAGGGACGATCCACATGCACGGGCACCTGGACATTGACGGCCTTC
TCCACGTAGACAGGGTAGGGCTTGGCCACTGGCACGGGGTAGGGCCTGGG
CACCTCAACGGGCACTGGGCGATCGACGGGCACATGGACGGGCACCTTCT
CGTGACGGATCACTTCGTAGGGCTGGGGCACTGGCACGGGCACCTTGACG
TACTCCTTAACGGTCACGGGCACCTTGCGGATGACTTCGTAGGGCTGGGG
CACGGGCACCTTAACTTCGACGGGCACGCGCTTCTCATGGACGACGGGAT
AGGGGCGGTCCACATGCACGGGCACTGGGATTCCCTTGGTGATGGTGATG
GTCTTGTGCACATCGGCCTGCTTGCTGATCACATAGGGGGCGGGAGCGTG
GTGGACAGCGACGGCGGGAGCAGTGTGTCCAACGGCGATCGCGGGACCAC
TGTGGCCCACGGCGACGGCAGCGGGTGCGGAGTATCCGGTCAGTCCGTAG
CCATGTCCGTAGCTTCCGTGGCCGGAGATGGAACCATGTCCCAGGTAGCC
GGTGTCCAGACCAGCATGACCGTAGCCGTAGCCCAGATCGAGCAGGCCGC
GCTTGTCCAGCTTCTTCTCCAGCGGCACCTTCTCACCCTCGGTTTTGCTG
GCGCAGGCGGAGGCCACCAGCAGAGCGGCTAAGCAGATGAATACTTTCAT
GTCGAC
BS04601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 834 | CG16884-RA | 1..834 | 850..17 | 4145 | 99.8 | Minus |
CG30101-PA | 987 | CG30101-RA | 409..440 | 415..384 | 160 | 100 | Minus |
CG30101-PA | 987 | CG30101-RA | 472..498 | 334..308 | 135 | 100 | Minus |
CG16885-PB | 471 | CG16885-RB | 334..360 | 415..389 | 135 | 100 | Minus |
CG16885-PA | 813 | CG16885-RA | 334..360 | 415..389 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..940 | 850..17 | 4155 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945229..13946050 | 17..838 | 4095 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:58:38 has no hits.
BS04601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:51 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:41 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:59 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 100..942 | 13..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:26 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 100..942 | 13..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:26 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945227..13946050 | 13..838 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:59 Download gff for
BS04601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945227..13946050 | 13..838 | 99 | <- | Plus |
BS04601.5prime Sequence
861 bp (844 high quality bases) assembled on 2005-12-02
> BS04601.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGTAA
AAGCTTTCTAG
BS04601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 834 | CG16884-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
CG30101-PA | 987 | CG30101-RA | 409..440 | 452..483 | 160 | 100 | Plus |
CG30101-PA | 987 | CG30101-RA | 472..498 | 533..559 | 135 | 100 | Plus |
CG16885-PB | 471 | CG16885-RB | 334..360 | 452..478 | 135 | 100 | Plus |
CG16885-PA | 813 | CG16885-RA | 334..360 | 452..478 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..940 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945229..13946050 | 850..29 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:11:48 has no hits.
BS04601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:52 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:43 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:10:21 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 5..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:22 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 5..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:22 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945227..13946050 | 29..854 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:10:21 Download gff for
BS04601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945227..13946050 | 29..854 | 99 | <- | Minus |
BS04601.complete Sequence
866 bp (866 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634971
> BS04601.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGTAA
AAGCTTTCTAGACCAT
BS04601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 834 | CG16884-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..940 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945229..13946050 | 850..29 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:57 has no hits.
BS04601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:20 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:36 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 93..940 | 5..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:31 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 107..938 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:21 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 93..940 | 5..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:04 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 107..938 | 17..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:04 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945231..13946050 | 29..848 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:31 Download gff for
BS04601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945231..13946050 | 29..848 | 100 | <- | Minus |
BS04601.pep Sequence
Translation from 16 to 849
> BS04601.pep
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHK*
BS04601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 277 | CG16884-PA | 1..277 | 1..277 | 1478 | 100 | Plus |
CG16885-PA | 270 | CG16885-PA | 9..238 | 7..272 | 382 | 41.8 | Plus |
CG30101-PA | 328 | CG30101-PA | 1..272 | 1..258 | 343 | 36.9 | Plus |
CG16886-PB | 358 | CG16886-PB | 66..246 | 100..262 | 316 | 44.6 | Plus |
CG16886-PA | 373 | CG16886-PA | 66..246 | 100..262 | 316 | 44.6 | Plus |
CG16886-PB | 358 | CG16886-PB | 135..299 | 100..259 | 285 | 43.8 | Plus |
CG16886-PB | 358 | CG16886-PB | 151..316 | 88..250 | 261 | 40.6 | Plus |
CG30101-PA | 328 | CG30101-PA | 180..317 | 103..248 | 241 | 42.9 | Plus |
CG16886-PB | 358 | CG16886-PB | 182..357 | 101..265 | 200 | 37.8 | Plus |
CG16886-PB | 358 | CG16886-PB | 73..194 | 134..264 | 196 | 44.2 | Plus |