Clone BS04602 Report

Search the DGRC for BS04602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptbsk-RB
Protein status:BS04602.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04602.3prime Sequence

937 bp (794 high quality bases) assembled on 2005-12-02

> BS04602.3prime
ATGGTCTAGAAAGCTTCTACCGCGTTCTATTATTTGTATTGTGTGCTTCG
TAGTCCATGACTTCCTCATAGATTAGCTCCTTCCACTGCTCCACAGTGTG
TTCCCTTTCGTCCACGCTGTGATCATATGGCTCCGGAGCGGGAGCATCCA
CTTCCTCAGCATCATACCACACGTTGATATATTCATGCTTCAAAGCCTCG
TCCACAGATATCCGCTGCTCTGGATCAATGACTAGCATTTTACTAAGAAG
ATTTCTAGCGTCAGAAGCCTTCCGGCGGCTATTCTGATTATTATCATTTG
GAAACAAGCCATCGGGGAAAAGTCTATCAAATGAGTATCCAGTGTATCTA
GGACGATTTTCCACATAGTTTCGGACGGTTGGCTGTAACCGTTGCATAAA
CGAGGGTGATGGTGTACCTAATTGCTCAATAATTTTATTCCACTGATCTA
TATGATCCGTTCCAGGAAACAGCACACCGCCCCGTATCATTTCGCCCATA
ATGCAACCGACGGACCATATGTCCACGTTCTCTGTGTATCCCATGCCCAA
AATGACCTCTGGAGCCCTGTAATATCGGGTGACCACATAGGGAGTCATCA
TAAAGGTAGTTCCTGCAGTACGTGCCAGACCGAAATCCAAAATTTTTAGA
GTGCAGTCGGCCTTTACAACTATATTGGATGGCTTTAAGTCTCTGTGAAT
AATTCCTGCTGAGTGTAAATGTTTTATTCCGCACAACATTTGATAAAGCA
AATAGGACATTCTGTCGTGATCCAAGTCCATTTGGATGACCTGGCAGAGA
TTAGCGTCCATCAGCTCCATGACCAGGTAGACATCCTGAAACTCTTCCAA
GTTCCTTTGCGGCGTANAAGCATTAAGTAAGCCAATTATGTTTTTATGGT
TAACAAGCTTCATTAGCTTGAATTCCCTATATGCTCG

BS04602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5680-PB 1119 bsk-RB 199..1119 937..17 4586 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
bsk-RE 1655 CG5680-RE 589..1510 937..16 4599 99.9 Minus
bsk-RF 1797 CG5680-RF 731..1652 937..16 4599 99.9 Minus
bsk-RB 1535 CG5680-RB 469..1390 937..16 4599 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10247852..10248136 143..427 1425 100 Plus
2L 23513712 2L 10248197..10248461 427..691 1325 100 Plus
2L 23513712 2L 10248524..10248722 691..889 984 99.5 Plus
2L 23513712 2L 10247647..10247773 16..142 635 100 Plus
2L 23513712 2L 10248785..10248832 890..937 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:19:46 has no hits.

BS04602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:53 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
bsk-PB 199..1119 17..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:44 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5680-PB 199..1119 17..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:08 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 469..1390 16..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:24 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 469..1390 16..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:24 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10248525..10248722 692..889 99 <- Plus
2L 10248785..10248832 890..937 100   Plus
2L 10247647..10247773 16..142 100 <- Plus
2L 10247852..10248135 143..426 100 <- Plus
2L 10248197..10248461 427..691 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:08 Download gff for BS04602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10248525..10248722 692..889 99 <- Plus
arm_2L 10248785..10248832 890..937 100   Plus
arm_2L 10247647..10247773 16..142 100 <- Plus
arm_2L 10247852..10248135 143..426 100 <- Plus
arm_2L 10248197..10248461 427..691 100 <- Plus

BS04602.5prime Sequence

846 bp (789 high quality bases) assembled on 2005-11-29

> BS04602.5prime
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTT

BS04602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5680-PB 1119 bsk-RB 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
bsk-RE 1655 CG5680-RE 391..1220 17..846 4150 100 Plus
bsk-RF 1797 CG5680-RF 533..1362 17..846 4150 100 Plus
bsk-RB 1535 CG5680-RB 271..1100 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10248197..10248461 725..461 1325 100 Minus
2L 23513712 2L 10248524..10248722 461..263 995 100 Minus
2L 23513712 2L 10248785..10248915 262..132 655 100 Minus
2L 23513712 2L 10248015..10248136 846..725 610 100 Minus
2L 23513712 2L 10249095..10249210 132..17 580 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:47:12 has no hits.

BS04602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:54 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
bsk-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:46 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5680-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:33 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 260..1100 7..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:23:42 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 260..1100 7..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:42 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10248015..10248135 726..846 100 <- Minus
2L 10248197..10248461 461..725 100 <- Minus
2L 10248525..10248722 263..460 100 <- Minus
2L 10248785..10248914 133..262 100 <- Minus
2L 10249095..10249221 7..132 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:33 Download gff for BS04602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10248015..10248135 726..846 100 <- Minus
arm_2L 10248197..10248461 461..725 100 <- Minus
arm_2L 10248525..10248722 263..460 100 <- Minus
arm_2L 10248785..10248914 133..262 100 <- Minus
arm_2L 10249095..10249221 7..132 97   Minus

BS04602.complete Sequence

1151 bp (1151 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634972

> BS04602.complete
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTT
CCAAATGATAATAATCAGAATAGCCGCCGGAAGGCTTCTGACGCTAGAAA
TCTTCTTAGTAAAATGCTAGTCATTGATCCAGAGCAGCGGATATCTGTGG
ACGAGGCTTTGAAGCATGAATATATCAACGTGTGGTATGATGCTGAGGAA
GTGGATGCTCCCGCTCCGGAGCCATATGATCACAGCGTGGACGAAAGGGA
ACACACTGTGGAGCAGTGGAAGGAGCTAATCTATGAGGAAGTCATGGACT
ACGAAGCACACAATACAAATAATAGAACGCGGTAGAAGCTTTCTAGACCA
T

BS04602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
bsk-RE 1119 CG5680-PE 1..1119 17..1135 5595 100 Plus
bsk-RF 1119 CG5680-PF 1..1119 17..1135 5595 100 Plus
bsk-RB 1119 CG5680-PB 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
bsk-RE 1655 CG5680-RE 391..1510 17..1136 5600 100 Plus
bsk-RF 1797 CG5680-RF 533..1652 17..1136 5600 100 Plus
bsk-RB 1535 CG5680-RB 271..1390 17..1136 5600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10247852..10248136 1009..725 1425 100 Minus
2L 23513712 2L 10248197..10248461 725..461 1325 100 Minus
2L 23513712 2L 10248524..10248722 461..263 995 100 Minus
2L 23513712 2L 10248785..10248915 262..132 655 100 Minus
2L 23513712 2L 10247647..10247773 1136..1010 635 100 Minus
2L 23513712 2L 10249095..10249210 132..17 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:54:47 has no hits.

BS04602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:21 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:38 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 238..1368 7..1136 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:53 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 271..1389 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:22 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 238..1368 7..1136 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:56 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
bsk-RB 271..1389 17..1135 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:56 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10248785..10248914 133..262 100 <- Minus
2L 10249095..10249210 17..132 100   Minus
2L 10247648..10247773 1010..1135 100 <- Minus
2L 10247852..10248135 726..1009 100 <- Minus
2L 10248197..10248461 461..725 100 <- Minus
2L 10248525..10248722 263..460 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:53 Download gff for BS04602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10247648..10247773 1010..1135 100 <- Minus
arm_2L 10247852..10248135 726..1009 100 <- Minus
arm_2L 10248197..10248461 461..725 100 <- Minus
arm_2L 10248525..10248722 263..460 100 <- Minus
arm_2L 10248785..10248914 133..262 100 <- Minus
arm_2L 10249095..10249210 17..132 100   Minus

BS04602.pep Sequence

Translation from 16 to 1134

> BS04602.pep
MTTAQHQHYTVEVGDTNFTIHSRYINLRPIGSGAQGIVCAAYDTITQQNV
AIKKLSRPFQNVTHAKRAYREFKLMKLVNHKNIIGLLNAFTPQRNLEEFQ
DVYLVMELMDANLCQVIQMDLDHDRMSYLLYQMLCGIKHLHSAGIIHRDL
KPSNIVVKADCTLKILDFGLARTAGTTFMMTPYVVTRYYRAPEVILGMGY
TENVDIWSVGCIMGEMIRGGVLFPGTDHIDQWNKIIEQLGTPSPSFMQRL
QPTVRNYVENRPRYTGYSFDRLFPDGLFPNDNNQNSRRKASDARNLLSKM
LVIDPEQRISVDEALKHEYINVWYDAEEVDAPAPEPYDHSVDEREHTVEQ
WKELIYEEVMDYEAHNTNNRTR*

BS04602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
bsk-PE 372 CG5680-PE 1..372 1..372 1979 100 Plus
bsk-PF 372 CG5680-PF 1..372 1..372 1979 100 Plus
bsk-PB 372 CG5680-PB 1..372 1..372 1979 100 Plus
p38a-PC 366 CG5475-PC 10..353 9..363 808 48.5 Plus
p38a-PB 366 CG5475-PB 10..353 9..363 808 48.5 Plus