Clone Sequence Records
BS04602.3prime Sequence
937 bp (794 high quality bases) assembled on 2005-12-02
> BS04602.3prime
ATGGTCTAGAAAGCTTCTACCGCGTTCTATTATTTGTATTGTGTGCTTCG
TAGTCCATGACTTCCTCATAGATTAGCTCCTTCCACTGCTCCACAGTGTG
TTCCCTTTCGTCCACGCTGTGATCATATGGCTCCGGAGCGGGAGCATCCA
CTTCCTCAGCATCATACCACACGTTGATATATTCATGCTTCAAAGCCTCG
TCCACAGATATCCGCTGCTCTGGATCAATGACTAGCATTTTACTAAGAAG
ATTTCTAGCGTCAGAAGCCTTCCGGCGGCTATTCTGATTATTATCATTTG
GAAACAAGCCATCGGGGAAAAGTCTATCAAATGAGTATCCAGTGTATCTA
GGACGATTTTCCACATAGTTTCGGACGGTTGGCTGTAACCGTTGCATAAA
CGAGGGTGATGGTGTACCTAATTGCTCAATAATTTTATTCCACTGATCTA
TATGATCCGTTCCAGGAAACAGCACACCGCCCCGTATCATTTCGCCCATA
ATGCAACCGACGGACCATATGTCCACGTTCTCTGTGTATCCCATGCCCAA
AATGACCTCTGGAGCCCTGTAATATCGGGTGACCACATAGGGAGTCATCA
TAAAGGTAGTTCCTGCAGTACGTGCCAGACCGAAATCCAAAATTTTTAGA
GTGCAGTCGGCCTTTACAACTATATTGGATGGCTTTAAGTCTCTGTGAAT
AATTCCTGCTGAGTGTAAATGTTTTATTCCGCACAACATTTGATAAAGCA
AATAGGACATTCTGTCGTGATCCAAGTCCATTTGGATGACCTGGCAGAGA
TTAGCGTCCATCAGCTCCATGACCAGGTAGACATCCTGAAACTCTTCCAA
GTTCCTTTGCGGCGTANAAGCATTAAGTAAGCCAATTATGTTTTTATGGT
TAACAAGCTTCATTAGCTTGAATTCCCTATATGCTCG
BS04602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5680-PB | 1119 | bsk-RB | 199..1119 | 937..17 | 4586 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 589..1510 | 937..16 | 4599 | 99.9 | Minus |
bsk-RF | 1797 | CG5680-RF | 731..1652 | 937..16 | 4599 | 99.9 | Minus |
bsk-RB | 1535 | CG5680-RB | 469..1390 | 937..16 | 4599 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10247852..10248136 | 143..427 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 10248197..10248461 | 427..691 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 10248524..10248722 | 691..889 | 984 | 99.5 | Plus |
2L | 23513712 | 2L | 10247647..10247773 | 16..142 | 635 | 100 | Plus |
2L | 23513712 | 2L | 10248785..10248832 | 890..937 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:19:46 has no hits.
BS04602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:53 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-PB | 199..1119 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:44 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5680-PB | 199..1119 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:08 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 469..1390 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:24 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 469..1390 | 16..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:24 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10248525..10248722 | 692..889 | 99 | <- | Plus |
2L | 10248785..10248832 | 890..937 | 100 | | Plus |
2L | 10247647..10247773 | 16..142 | 100 | <- | Plus |
2L | 10247852..10248135 | 143..426 | 100 | <- | Plus |
2L | 10248197..10248461 | 427..691 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:08 Download gff for
BS04602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10248525..10248722 | 692..889 | 99 | <- | Plus |
arm_2L | 10248785..10248832 | 890..937 | 100 | | Plus |
arm_2L | 10247647..10247773 | 16..142 | 100 | <- | Plus |
arm_2L | 10247852..10248135 | 143..426 | 100 | <- | Plus |
arm_2L | 10248197..10248461 | 427..691 | 100 | <- | Plus |
BS04602.5prime Sequence
846 bp (789 high quality bases) assembled on 2005-11-29
> BS04602.5prime
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTT
BS04602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5680-PB | 1119 | bsk-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 391..1220 | 17..846 | 4150 | 100 | Plus |
bsk-RF | 1797 | CG5680-RF | 533..1362 | 17..846 | 4150 | 100 | Plus |
bsk-RB | 1535 | CG5680-RB | 271..1100 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10248197..10248461 | 725..461 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 10248524..10248722 | 461..263 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10248785..10248915 | 262..132 | 655 | 100 | Minus |
2L | 23513712 | 2L | 10248015..10248136 | 846..725 | 610 | 100 | Minus |
2L | 23513712 | 2L | 10249095..10249210 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:47:12 has no hits.
BS04602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:54 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-PB | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:46 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5680-PB | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:33 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 260..1100 | 7..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:23:42 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 260..1100 | 7..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:42 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10248015..10248135 | 726..846 | 100 | <- | Minus |
2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
2L | 10249095..10249221 | 7..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:33 Download gff for
BS04602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10248015..10248135 | 726..846 | 100 | <- | Minus |
arm_2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
arm_2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
arm_2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
arm_2L | 10249095..10249221 | 7..132 | 97 | | Minus |
BS04602.complete Sequence
1151 bp (1151 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634972
> BS04602.complete
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTT
CCAAATGATAATAATCAGAATAGCCGCCGGAAGGCTTCTGACGCTAGAAA
TCTTCTTAGTAAAATGCTAGTCATTGATCCAGAGCAGCGGATATCTGTGG
ACGAGGCTTTGAAGCATGAATATATCAACGTGTGGTATGATGCTGAGGAA
GTGGATGCTCCCGCTCCGGAGCCATATGATCACAGCGTGGACGAAAGGGA
ACACACTGTGGAGCAGTGGAAGGAGCTAATCTATGAGGAAGTCATGGACT
ACGAAGCACACAATACAAATAATAGAACGCGGTAGAAGCTTTCTAGACCA
T
BS04602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1119 | CG5680-PE | 1..1119 | 17..1135 | 5595 | 100 | Plus |
bsk-RF | 1119 | CG5680-PF | 1..1119 | 17..1135 | 5595 | 100 | Plus |
bsk-RB | 1119 | CG5680-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 391..1510 | 17..1136 | 5600 | 100 | Plus |
bsk-RF | 1797 | CG5680-RF | 533..1652 | 17..1136 | 5600 | 100 | Plus |
bsk-RB | 1535 | CG5680-RB | 271..1390 | 17..1136 | 5600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10247852..10248136 | 1009..725 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 10248197..10248461 | 725..461 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 10248524..10248722 | 461..263 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10248785..10248915 | 262..132 | 655 | 100 | Minus |
2L | 23513712 | 2L | 10247647..10247773 | 1136..1010 | 635 | 100 | Minus |
2L | 23513712 | 2L | 10249095..10249210 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:54:47 has no hits.
BS04602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:21 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:38 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 238..1368 | 7..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:53 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 271..1389 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:22 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 238..1368 | 7..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:56 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 271..1389 | 17..1135 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:56 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
2L | 10249095..10249210 | 17..132 | 100 | | Minus |
2L | 10247648..10247773 | 1010..1135 | 100 | <- | Minus |
2L | 10247852..10248135 | 726..1009 | 100 | <- | Minus |
2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:53 Download gff for
BS04602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10247648..10247773 | 1010..1135 | 100 | <- | Minus |
arm_2L | 10247852..10248135 | 726..1009 | 100 | <- | Minus |
arm_2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
arm_2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
arm_2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
arm_2L | 10249095..10249210 | 17..132 | 100 | | Minus |
BS04602.pep Sequence
Translation from 16 to 1134
> BS04602.pep
MTTAQHQHYTVEVGDTNFTIHSRYINLRPIGSGAQGIVCAAYDTITQQNV
AIKKLSRPFQNVTHAKRAYREFKLMKLVNHKNIIGLLNAFTPQRNLEEFQ
DVYLVMELMDANLCQVIQMDLDHDRMSYLLYQMLCGIKHLHSAGIIHRDL
KPSNIVVKADCTLKILDFGLARTAGTTFMMTPYVVTRYYRAPEVILGMGY
TENVDIWSVGCIMGEMIRGGVLFPGTDHIDQWNKIIEQLGTPSPSFMQRL
QPTVRNYVENRPRYTGYSFDRLFPDGLFPNDNNQNSRRKASDARNLLSKM
LVIDPEQRISVDEALKHEYINVWYDAEEVDAPAPEPYDHSVDEREHTVEQ
WKELIYEEVMDYEAHNTNNRTR*
BS04602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-PE | 372 | CG5680-PE | 1..372 | 1..372 | 1979 | 100 | Plus |
bsk-PF | 372 | CG5680-PF | 1..372 | 1..372 | 1979 | 100 | Plus |
bsk-PB | 372 | CG5680-PB | 1..372 | 1..372 | 1979 | 100 | Plus |
p38a-PC | 366 | CG5475-PC | 10..353 | 9..363 | 808 | 48.5 | Plus |
p38a-PB | 366 | CG5475-PB | 10..353 | 9..363 | 808 | 48.5 | Plus |