Clone BS04604 Report

Search the DGRC for BS04604

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG1129-RA
Protein status:BS04604.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04604.3prime Sequence

945 bp (805 high quality bases) assembled on 2005-12-02

> BS04604.3prime
ATGGTCTAGAAAGCTTTCACATAATGATCTGCGGTTCTGGGACACTGGCC
GCAATGCTTTTATGGGGCAAGACCTGGCCTCCATTAATGTAGAGCTCATC
CTTCACGATTACATCCTCGCCTAGCACGGTGATGCCTTCGATGCGAACCC
AACGGCCAACTGTAGAACGCCAACCGACAATGCAGGAGTCCAGCCATGAG
TGTGAGCGAACGATGGCGCCTTTGAGGATGGTCGAGCGCTTAATGCACAC
GCCATCCTCGATGACCACGTCCGGTCCAATGGTTACATTAGGCCCTATGC
GACAACCCTCGCCGATTTTGGCCGTGGGATCCACCAACACGTTGCCCACC
ACTCCAGGGCCTGTGTACAGCTTGGGGGATTGCTTCTGGCGCAGCGAGCT
TAGATACAGACACATGCCGGTTAGGAAGTCTTTTGGCTGTCCGATGTCCA
TCCAGAATCCAGTTAAATCCATTGCATACAACTCCTGTTGCTGCGTCATT
TCAGGGAACACCTCCTTCTCTATTGATGTGGGCTTAACTTCGATCCGGTC
AAGCACGGAGGGATTAAAGATGTAAATGCCGGCATTGATCTTATTGCTAA
CGAACTCTTGTGGCTTTTCAATAAAGTTTTTTATACAGCCGTTCTCATCG
TACAGCACAACTCCGTATTTGGATGGTTCTTCGACCTTTGTGACAACAAT
TGTGCCTTCTTTTCCGTGATTACAATGGAATTGCACTAGTTGTTTAAATG
GAAAATCGCATATAACGTCCGAATTGAGCACGAAAAATGGCTCTGAGCTG
GCTGCTAAAATCGTTTTTGCTAGGGCCAGAGGTCCAGCTGTTCCCAGGGG
TTCCGTCTCGTGTGAGAAGATCAATTCCACGCCCAGTTTCTTGGCTTCGA
CTTTTAGCTCCTTTTTCATTTGCTCGGCTCGATAGCTGACGGCTA

BS04604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PB 1110 CG1129-RB 182..1110 945..17 4595 99.7 Minus
CG1129-PA 1110 CG1129-RA 182..1110 945..17 4595 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1446..2374 945..17 4615 99.8 Minus
CG1129-RD 1612 CG1129-RD 346..1274 945..17 4615 99.8 Minus
CG1129-RA 1715 CG1129-RA 449..1377 945..17 4615 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4814246..4814774 945..417 2615 99.6 Minus
3R 32079331 3R 4815286..4815687 418..17 2010 100 Minus
Blast to na_te.dros performed 2015-02-10 19:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 555..490 114 63.6 Minus

BS04604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:57 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 183..1110 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:50 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 183..1110 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:56 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 589..1519 13..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:55 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 450..1380 13..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:55 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4814247..4814773 418..944 99 -> Minus
3R 4815287..4815690 13..417 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:56 Download gff for BS04604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639969..640495 418..944 99 -> Minus
arm_3R 641009..641412 13..417 99   Minus

BS04604.5prime Sequence

954 bp (888 high quality bases) assembled on 2005-12-02

> BS04604.5prime
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGGCGCATCGTTCGCTCACACTCATGGC
TGGA

BS04604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PB 1110 CG1129-RB 1..908 17..924 4540 100 Plus
CG1129-PA 1110 CG1129-RA 1..908 17..924 4540 100 Plus
CG1129-PB 1110 CG1129-RB 912..938 928..954 135 100 Plus
CG1129-PA 1110 CG1129-RA 912..938 928..954 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1265..2202 17..954 4645 99.8 Plus
CG1129-RD 1612 CG1129-RD 165..1102 17..954 4645 99.8 Plus
CG1129-RA 1715 CG1129-RA 268..1205 17..954 4645 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4814236..4814774 188..726 2695 100 Plus
3R 32079331 3R 4815286..4815515 725..954 1105 98.7 Plus
3R 32079331 3R 4813803..4813978 17..192 880 100 Plus
Blast to na_te.dros performed 2015-02-10 00:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 588..653 114 63.6 Plus

BS04604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:59 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 1..937 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:52 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 1..937 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:03 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 403..1343 10..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:22 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 264..1204 10..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:22 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4813799..4813976 10..190 98 -> Plus
3R 4814239..4814773 191..725 100 -> Plus
3R 4815287..4815514 726..953 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:03 Download gff for BS04604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639521..639698 10..190 98 -> Plus
arm_3R 639961..640495 191..725 100 -> Plus
arm_3R 641009..641236 726..953 99   Plus

BS04604.complete Sequence

1142 bp (1142 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638777

> BS04604.complete
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGCGCCATCGTTCGCTCACACTCATGGC
TGGACTCCTGCATTGTCGGTTGGCGTTCTACAGTTGGCCGTTGGGTTCGC
ATCGAAGGCATCACCGTGCTAGGCGAGGATGTAATCGTGAAGGATGAGCT
CTACATTAATGGAGGCCAGGTCTTGCCCCATAAAAGCATTGCGGCCAGTG
TCCCAGAACCGCAGATCATTATGTGAAAGCTTTCTAGACCAT

BS04604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 1110 CG1129-PE 1..1110 17..1126 5550 100 Plus
CG1129-RD 1110 CG1129-PD 1..1110 17..1126 5550 100 Plus
CG1129-RA 1110 CG1129-PA 1..1110 17..1126 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1265..2374 17..1126 5550 100 Plus
CG1129-RD 1612 CG1129-RD 165..1274 17..1126 5550 100 Plus
CG1129-RA 1715 CG1129-RA 268..1377 17..1126 5550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4814236..4814774 188..726 2695 100 Plus
3R 32079331 3R 4815286..4815687 725..1126 2010 100 Plus
3R 32079331 3R 4813803..4813978 17..192 880 100 Plus
Blast to na_te.dros performed 2014-11-27 14:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 588..653 114 63.6 Plus

BS04604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:01 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 17..1126 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:16 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 245..1361 10..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:37 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 407..1515 17..1125 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:02 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 245..1361 10..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:25 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 268..1376 17..1125 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:25 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4813803..4813976 17..190 100 -> Plus
3R 4814239..4814773 191..725 100 -> Plus
3R 4815287..4815686 726..1125 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:37 Download gff for BS04604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639525..639698 17..190 100 -> Plus
arm_3R 639961..640495 191..725 100 -> Plus
arm_3R 641009..641408 726..1125 100   Plus

BS04604.pep Sequence

Translation from 16 to 1125

> BS04604.pep
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIM*

BS04604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PE 369 CG1129-PE 1..369 1..369 1919 100 Plus
CG1129-PD 369 CG1129-PD 1..369 1..369 1919 100 Plus
CG1129-PA 369 CG1129-PA 1..369 1..369 1919 100 Plus
CG1129-PB 369 CG1129-PB 1..369 1..369 1919 100 Plus
CG8207-PA 438 CG8207-PA 3..431 12..361 386 27.9 Plus