Clone Sequence Records
BS04604.3prime Sequence
945 bp (805 high quality bases) assembled on 2005-12-02
> BS04604.3prime
ATGGTCTAGAAAGCTTTCACATAATGATCTGCGGTTCTGGGACACTGGCC
GCAATGCTTTTATGGGGCAAGACCTGGCCTCCATTAATGTAGAGCTCATC
CTTCACGATTACATCCTCGCCTAGCACGGTGATGCCTTCGATGCGAACCC
AACGGCCAACTGTAGAACGCCAACCGACAATGCAGGAGTCCAGCCATGAG
TGTGAGCGAACGATGGCGCCTTTGAGGATGGTCGAGCGCTTAATGCACAC
GCCATCCTCGATGACCACGTCCGGTCCAATGGTTACATTAGGCCCTATGC
GACAACCCTCGCCGATTTTGGCCGTGGGATCCACCAACACGTTGCCCACC
ACTCCAGGGCCTGTGTACAGCTTGGGGGATTGCTTCTGGCGCAGCGAGCT
TAGATACAGACACATGCCGGTTAGGAAGTCTTTTGGCTGTCCGATGTCCA
TCCAGAATCCAGTTAAATCCATTGCATACAACTCCTGTTGCTGCGTCATT
TCAGGGAACACCTCCTTCTCTATTGATGTGGGCTTAACTTCGATCCGGTC
AAGCACGGAGGGATTAAAGATGTAAATGCCGGCATTGATCTTATTGCTAA
CGAACTCTTGTGGCTTTTCAATAAAGTTTTTTATACAGCCGTTCTCATCG
TACAGCACAACTCCGTATTTGGATGGTTCTTCGACCTTTGTGACAACAAT
TGTGCCTTCTTTTCCGTGATTACAATGGAATTGCACTAGTTGTTTAAATG
GAAAATCGCATATAACGTCCGAATTGAGCACGAAAAATGGCTCTGAGCTG
GCTGCTAAAATCGTTTTTGCTAGGGCCAGAGGTCCAGCTGTTCCCAGGGG
TTCCGTCTCGTGTGAGAAGATCAATTCCACGCCCAGTTTCTTGGCTTCGA
CTTTTAGCTCCTTTTTCATTTGCTCGGCTCGATAGCTGACGGCTA
BS04604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PB | 1110 | CG1129-RB | 182..1110 | 945..17 | 4595 | 99.7 | Minus |
CG1129-PA | 1110 | CG1129-RA | 182..1110 | 945..17 | 4595 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1446..2374 | 945..17 | 4615 | 99.8 | Minus |
CG1129-RD | 1612 | CG1129-RD | 346..1274 | 945..17 | 4615 | 99.8 | Minus |
CG1129-RA | 1715 | CG1129-RA | 449..1377 | 945..17 | 4615 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4814246..4814774 | 945..417 | 2615 | 99.6 | Minus |
3R | 32079331 | 3R | 4815286..4815687 | 418..17 | 2010 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 555..490 | 114 | 63.6 | Minus |
BS04604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:57 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 183..1110 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:50 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 183..1110 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:56 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 589..1519 | 13..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:55 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 450..1380 | 13..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:55 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4814247..4814773 | 418..944 | 99 | -> | Minus |
3R | 4815287..4815690 | 13..417 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:56 Download gff for
BS04604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 639969..640495 | 418..944 | 99 | -> | Minus |
arm_3R | 641009..641412 | 13..417 | 99 | | Minus |
BS04604.5prime Sequence
954 bp (888 high quality bases) assembled on 2005-12-02
> BS04604.5prime
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGGCGCATCGTTCGCTCACACTCATGGC
TGGA
BS04604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PB | 1110 | CG1129-RB | 1..908 | 17..924 | 4540 | 100 | Plus |
CG1129-PA | 1110 | CG1129-RA | 1..908 | 17..924 | 4540 | 100 | Plus |
CG1129-PB | 1110 | CG1129-RB | 912..938 | 928..954 | 135 | 100 | Plus |
CG1129-PA | 1110 | CG1129-RA | 912..938 | 928..954 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1265..2202 | 17..954 | 4645 | 99.8 | Plus |
CG1129-RD | 1612 | CG1129-RD | 165..1102 | 17..954 | 4645 | 99.8 | Plus |
CG1129-RA | 1715 | CG1129-RA | 268..1205 | 17..954 | 4645 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4814236..4814774 | 188..726 | 2695 | 100 | Plus |
3R | 32079331 | 3R | 4815286..4815515 | 725..954 | 1105 | 98.7 | Plus |
3R | 32079331 | 3R | 4813803..4813978 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 00:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 588..653 | 114 | 63.6 | Plus |
BS04604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:59 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:52 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:03 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 403..1343 | 10..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:22 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 264..1204 | 10..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:22 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4813799..4813976 | 10..190 | 98 | -> | Plus |
3R | 4814239..4814773 | 191..725 | 100 | -> | Plus |
3R | 4815287..4815514 | 726..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:03 Download gff for
BS04604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 639521..639698 | 10..190 | 98 | -> | Plus |
arm_3R | 639961..640495 | 191..725 | 100 | -> | Plus |
arm_3R | 641009..641236 | 726..953 | 99 | | Plus |
BS04604.complete Sequence
1142 bp (1142 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638777
> BS04604.complete
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGCGCCATCGTTCGCTCACACTCATGGC
TGGACTCCTGCATTGTCGGTTGGCGTTCTACAGTTGGCCGTTGGGTTCGC
ATCGAAGGCATCACCGTGCTAGGCGAGGATGTAATCGTGAAGGATGAGCT
CTACATTAATGGAGGCCAGGTCTTGCCCCATAAAAGCATTGCGGCCAGTG
TCCCAGAACCGCAGATCATTATGTGAAAGCTTTCTAGACCAT
BS04604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 1110 | CG1129-PE | 1..1110 | 17..1126 | 5550 | 100 | Plus |
CG1129-RD | 1110 | CG1129-PD | 1..1110 | 17..1126 | 5550 | 100 | Plus |
CG1129-RA | 1110 | CG1129-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1265..2374 | 17..1126 | 5550 | 100 | Plus |
CG1129-RD | 1612 | CG1129-RD | 165..1274 | 17..1126 | 5550 | 100 | Plus |
CG1129-RA | 1715 | CG1129-RA | 268..1377 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4814236..4814774 | 188..726 | 2695 | 100 | Plus |
3R | 32079331 | 3R | 4815286..4815687 | 725..1126 | 2010 | 100 | Plus |
3R | 32079331 | 3R | 4813803..4813978 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 588..653 | 114 | 63.6 | Plus |
BS04604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:01 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:16 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 245..1361 | 10..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:37 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 407..1515 | 17..1125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:02 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 245..1361 | 10..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:25 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 268..1376 | 17..1125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:25 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4813803..4813976 | 17..190 | 100 | -> | Plus |
3R | 4814239..4814773 | 191..725 | 100 | -> | Plus |
3R | 4815287..4815686 | 726..1125 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:37 Download gff for
BS04604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 639525..639698 | 17..190 | 100 | -> | Plus |
arm_3R | 639961..640495 | 191..725 | 100 | -> | Plus |
arm_3R | 641009..641408 | 726..1125 | 100 | | Plus |
BS04604.pep Sequence
Translation from 16 to 1125
> BS04604.pep
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIM*
BS04604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PE | 369 | CG1129-PE | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PD | 369 | CG1129-PD | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PA | 369 | CG1129-PA | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PB | 369 | CG1129-PB | 1..369 | 1..369 | 1919 | 100 | Plus |
CG8207-PA | 438 | CG8207-PA | 3..431 | 12..361 | 386 | 27.9 | Plus |