Clone Sequence Records
BS04605.3prime Sequence
979 bp (855 high quality bases) assembled on 2005-12-02
> BS04605.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGCTTCTGCATGTGAATGCGATCCTGG
ACGTTACGTGCCTGCTGCTGATCCTCGATGGACTTGAGCTCCTTAGACAC
GGTCGACTTGAGGCTGGCGTCCAAGGCCAAGGCGTCGAGGAAGTCGCGAC
GTGCCTGTGCTGGATTCCAGGCACCCGCATGGGCCTTGGCCCGACGAAAA
AGTGCCTTGACATTGCGCGGATCCAGGGTGAGCACCTCGTTGCAGTGCTC
GATCACAGCGTAGAAGTCGCCGGCGATCAACCGACATTGCGCGTAGTTCA
ACAACAGCGGTGTCTTGATGGCCGCCAGCTCCTGCCACTCCTCGTCGTGC
GGCTTCTCCTTTAGCATCAGCTGCTCCACAATTCCGACAGCCTCGCGGTA
GCAGGTCTCCGCCTCTGTGAACCGACTGGCCTTATAGAAGTTGTTGCCCC
GTTCGCGCAGCGTACTGGTGGCCAGCATCTTTTCGTCGTCGGACATCTGC
CAGCGCTCTTTTTCGTACTGCTCGGGCAGCTCAATGGAGAACAGTTCAAT
GATGAACTCCAGATCGGAAGGATTTTGCAGCAGCTCATCCAGGTCGGTGT
ACCCAATGCCCTCGTTCTGCAATGTCATTCCGCAGCAGTGACGTCGCTCC
TCCGGTTTCTTGCCAATGTCCCGCAGGGTCTTGGATATAAAAGGATATTG
AGCGCAGAGCGACTTATGTACCGTGAACTTGGCCACTTCGTTAAGGGACA
TCTGCTGCACAATCAGCTCCCAGACCTCTAGCTTAAACTTCTTCCCCAGG
ACCAGCTCCATGGGCTTCTCCATCTTGCGGCTATCATCGATGATGCGACT
GTCGCCGGCCCTCCGCGTTTGAAAGTGGAACTTCACCCTGGTGCCCGGGG
TTAGCTCGATGTAGGCGTTTCCCGAATTGAGGATCTCCTTTCGTATGGGC
TTCATATCGGACTTGCTGCGCGACTGCAT
BS04605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 1..963 | 979..17 | 4790 | 99.8 | Minus |
CG1847-PB | 996 | CG1847-RB | 126..996 | 887..17 | 4355 | 100 | Minus |
CG1847-PB | 996 | CG1847-RB | 1..93 | 979..887 | 440 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..1042 | 979..15 | 4810 | 99.9 | Minus |
CG1847-RA | 1776 | CG1847-RA | 78..1042 | 979..15 | 4810 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870434 | 710..15 | 3480 | 100 | Minus |
X | 23542271 | X | 11869481..11869658 | 887..710 | 890 | 100 | Minus |
X | 23542271 | X | 11869247..11869343 | 979..883 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:22:28 has no hits.
BS04605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:52:59 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..963 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:53 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..963 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:06 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1042 | 15..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:07 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1042 | 15..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:07 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869247..11869339 | 887..979 | 98 | -> | Minus |
X | 11869482..11869658 | 710..886 | 100 | -> | Minus |
X | 11869740..11870434 | 15..709 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:06 Download gff for
BS04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763280..11763372 | 887..979 | 98 | -> | Minus |
arm_X | 11763515..11763691 | 710..886 | 100 | -> | Minus |
arm_X | 11763773..11764467 | 15..709 | 100 | | Minus |
BS04605.5prime Sequence
883 bp (865 high quality bases) assembled on 2005-11-29
> BS04605.5prime
GAAGTTATCAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCA
TACGAAAGGAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCG
GGCACCAGGGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCG
CATCATCGATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGG
GGAAGAAGTTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCC
CTTAACGAAGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATA
TCCTTTTATATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGC
GACGTCACTGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACC
GACCTGGATGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGA
ACTGTTCTCCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGA
TGTCCGACGACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGC
AACAACTTCTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCG
CGAGGCTGTCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACG
ACGAGGAGTGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAAC
TACGCGCAATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCA
CTGCAACGAGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTC
GTCGGGCCAAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGC
GACTTCCTCGACGCCTTGGCCTTGGACGCCAGC
BS04605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 126..900 | 109..883 | 3875 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 1..93 | 17..109 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..944 | 17..883 | 4335 | 100 | Plus |
CG1847-RA | 1776 | CG1847-RA | 78..944 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870336 | 286..883 | 2990 | 100 | Plus |
X | 23542271 | X | 11869481..11869658 | 109..286 | 890 | 100 | Plus |
X | 23542271 | X | 11869247..11869343 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:33:03 has no hits.
BS04605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:00 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:55 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:42 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 67..944 | 5..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:45 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 67..944 | 5..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:45 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869236..11869339 | 5..109 | 95 | -> | Plus |
X | 11869482..11869658 | 110..286 | 100 | -> | Plus |
X | 11869740..11870336 | 287..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:42 Download gff for
BS04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763269..11763372 | 5..109 | 95 | -> | Plus |
arm_X | 11763515..11763691 | 110..286 | 100 | -> | Plus |
arm_X | 11763773..11764369 | 287..883 | 100 | | Plus |
BS04605.complete Sequence
995 bp (995 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634973
> BS04605.complete
GAAGTTATCAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCA
TACGAAAGGAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCG
GGCACCAGGGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCG
CATCATCGATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGG
GGAAGAAGTTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCC
CTTAACGAAGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATA
TCCTTTTATATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGC
GACGTCACTGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACC
GACCTGGATGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGA
ACTGTTCTCCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGA
TGTCCGACGACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGC
AACAACTTCTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCG
CGAGGCTGTCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACG
ACGAGGAGTGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAAC
TACGCGCAATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCA
CTGCAACGAGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTC
GTCGGGCCAAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGC
GACTTCCTCGACGCCTTGGCCTTGGACGCCAGCCTCAAGTCGACCGTGTC
TAAGGAGCTCAAGTCCATCGAGGATCAGCAGCAGGCACGTAACGTCCAGG
ATCGCATTCACATGCAGAAGCTCTTCTAGAAGCTTTCTAGACCAT
BS04605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1029 | CG1847-PC | 1..965 | 17..981 | 4825 | 100 | Plus |
CG1847-RA | 963 | CG1847-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..1042 | 17..981 | 4825 | 100 | Plus |
CG1847-RA | 1776 | CG1847-RA | 78..1042 | 17..981 | 4825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870434 | 286..981 | 3480 | 100 | Plus |
X | 23542271 | X | 11869481..11869658 | 109..286 | 890 | 100 | Plus |
X | 23542271 | X | 11869247..11869343 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:46 has no hits.
BS04605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:04 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:49 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 49..1024 | 5..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:27 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1040 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:06 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 49..1024 | 5..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:10 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1040 | 17..979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:10 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869247..11869339 | 17..109 | 100 | -> | Plus |
X | 11869482..11869658 | 110..286 | 100 | -> | Plus |
X | 11869740..11870432 | 287..979 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:27 Download gff for
BS04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763280..11763372 | 17..109 | 100 | -> | Plus |
arm_X | 11763515..11763691 | 110..286 | 100 | -> | Plus |
arm_X | 11763773..11764465 | 287..979 | 100 | | Plus |
BS04605.pep Sequence
Translation from 16 to 978
> BS04605.pep
MQSRSKSDMKPIRKEILNPGNAYIELTPGTRVKFHFQTRRAGDSRIIDDS
RKMEKPMELVLGKKFKLEVWELIVQQMSLNEVAKFTVHKSLCAQYPFISK
TLRDIGKKPEERRHCCGMTLQNEGIGYTDLDELLQNPSDLEFIIELFSIE
LPEQYEKERWQMSDDEKMLATSTLRERGNNFYKASRFTEAETCYREAVGI
VEQLMLKEKPHDEEWQELAAIKTPLLLNYAQCRLIAGDFYAVIEHCNEVL
TLDPRNVKALFRRAKAHAGAWNPAQARRDFLDALALDASLKSTVSKELKS
IEDQQQARNVQDRIHMQKLF*
BS04605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 320 | CG1847-PA | 1..320 | 1..320 | 1658 | 100 | Plus |
CG1847-PC | 342 | CG1847-PC | 1..320 | 1..320 | 1658 | 100 | Plus |
FKBP59-PB | 439 | CG4535-PB | 239..389 | 158..315 | 174 | 25.9 | Plus |
FKBP59-PA | 439 | CG4535-PA | 239..389 | 158..315 | 174 | 25.9 | Plus |
CG8336-PD | 383 | CG8336-PD | 148..382 | 98..320 | 153 | 25.1 | Plus |