Clone Sequence Records
BS04606.5prime Sequence
366 bp (365 high quality bases) assembled on 2005-12-02
> BS04606.5prime
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAT
AGAAGCTTTCTAGACC
BS04606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PC | 336 | CG9368-RC | 1..336 | 17..352 | 1680 | 100 | Plus |
CG9368-PA | 549 | CG9368-RA | 4..225 | 16..237 | 1110 | 100 | Plus |
CG9368-PB | 534 | CG9368-RB | 4..223 | 16..235 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RD | 2423 | CG9368-RD | 144..481 | 16..353 | 1690 | 100 | Plus |
CG9368-RA | 1828 | CG9368-RA | 144..365 | 16..237 | 1110 | 100 | Plus |
CG9368-RB | 1813 | CG9368-RB | 144..363 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19601776..19601977 | 16..217 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19602039..19602178 | 214..353 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:29:50 has no hits.
BS04606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:03 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PC | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:57 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PC | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:45:18 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 144..486 | 16..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:59 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 144..486 | 16..358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:59 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601776..19601976 | 16..216 | 100 | -> | Plus |
3L | 19602042..19602183 | 217..358 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:45:18 Download gff for
BS04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594876..19595076 | 16..216 | 100 | -> | Plus |
arm_3L | 19595142..19595283 | 217..358 | 98 | | Plus |
BS04606.3prime Sequence
366 bp (365 high quality bases) assembled on 2005-12-02
> BS04606.3prime
ATGGTCTAGAAAGCTTCTATTCAGCGGCCAGCACTTGGCAAGGGTTTGCG
CTGAAGTGCTCGAAAGGGAAAAGCAATACACTATCCAAATAGCTAAGAAG
TGAAATGTACTGAACCACACTGCGTATACTTACTCGGTCGTTTTTCCTTG
CCCTGTTGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTC
AGCCCGCAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCT
GGGGATTTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCG
ATTCCATCAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGC
ATGTCGACTGATAACT
BS04606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PC | 336 | CG9368-RC | 1..336 | 352..17 | 1680 | 100 | Minus |
CG9368-PA | 549 | CG9368-RA | 4..225 | 353..132 | 1110 | 100 | Minus |
CG9368-PB | 534 | CG9368-RB | 4..223 | 353..134 | 1100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RD | 2423 | CG9368-RD | 144..481 | 353..16 | 1690 | 100 | Minus |
CG9368-RA | 1828 | CG9368-RA | 144..365 | 353..132 | 1110 | 100 | Minus |
CG9368-RB | 1813 | CG9368-RB | 144..363 | 353..134 | 1100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19601776..19601977 | 353..152 | 1010 | 100 | Minus |
3L | 28110227 | 3L | 19602039..19602178 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:35:54 has no hits.
BS04606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:02 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PC | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:56 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PC | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:53 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 144..486 | 11..353 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:04 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 144..486 | 11..353 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:04 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601776..19601976 | 153..353 | 100 | -> | Minus |
3L | 19602042..19602183 | 11..152 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:53 Download gff for
BS04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19595142..19595283 | 11..152 | 98 | | Minus |
arm_3L | 19594876..19595076 | 153..353 | 100 | -> | Minus |
BS04606.complete Sequence
368 bp (368 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634974
> BS04606.complete
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAT
AGAAGCTTTCTAGACCAT
BS04606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RD | 264 | CG9368-PD | 4..264 | 16..276 | 1305 | 100 | Plus |
CG9368-RA | 549 | CG9368-PA | 4..225 | 16..237 | 1110 | 100 | Plus |
CG9368-RB | 534 | CG9368-PB | 4..223 | 16..235 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RD | 2423 | CG9368-RD | 144..481 | 16..353 | 1690 | 100 | Plus |
CG9368-RA | 1828 | CG9368-RA | 144..365 | 16..237 | 1110 | 100 | Plus |
CG9368-RB | 1813 | CG9368-RB | 144..363 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19601776..19601977 | 16..217 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19602039..19602178 | 214..353 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:33 has no hits.
BS04606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:07 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:19 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 123..465 | 16..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:30 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 145..480 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:07 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 123..465 | 16..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:32 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 145..480 | 17..352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:32 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601777..19601976 | 17..216 | 100 | -> | Plus |
3L | 19602042..19602177 | 217..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:30 Download gff for
BS04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594877..19595076 | 17..216 | 100 | -> | Plus |
arm_3L | 19595142..19595277 | 217..352 | 100 | | Plus |
BS04606.pep Sequence
Translation from 16 to 351
> BS04606.pep
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence BS04606.pep has no blast hits.