Clone BS04606 Report

Search the DGRC for BS04606

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG9368-RC
Protein status:BS04606.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04606.5prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-02

> BS04606.5prime
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAT
AGAAGCTTTCTAGACC

BS04606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PC 336 CG9368-RC 1..336 17..352 1680 100 Plus
CG9368-PA 549 CG9368-RA 4..225 16..237 1110 100 Plus
CG9368-PB 534 CG9368-RB 4..223 16..235 1100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RD 2423 CG9368-RD 144..481 16..353 1690 100 Plus
CG9368-RA 1828 CG9368-RA 144..365 16..237 1110 100 Plus
CG9368-RB 1813 CG9368-RB 144..363 16..235 1100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19601776..19601977 16..217 1010 100 Plus
3L 28110227 3L 19602039..19602178 214..353 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:29:50 has no hits.

BS04606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:03 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PC 1..336 17..352 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:57 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PC 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:45:18 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 144..486 16..358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:59 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 144..486 16..358 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:59 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601776..19601976 16..216 100 -> Plus
3L 19602042..19602183 217..358 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:45:18 Download gff for BS04606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594876..19595076 16..216 100 -> Plus
arm_3L 19595142..19595283 217..358 98   Plus

BS04606.3prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-02

> BS04606.3prime
ATGGTCTAGAAAGCTTCTATTCAGCGGCCAGCACTTGGCAAGGGTTTGCG
CTGAAGTGCTCGAAAGGGAAAAGCAATACACTATCCAAATAGCTAAGAAG
TGAAATGTACTGAACCACACTGCGTATACTTACTCGGTCGTTTTTCCTTG
CCCTGTTGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTC
AGCCCGCAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCT
GGGGATTTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCG
ATTCCATCAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGC
ATGTCGACTGATAACT

BS04606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PC 336 CG9368-RC 1..336 352..17 1680 100 Minus
CG9368-PA 549 CG9368-RA 4..225 353..132 1110 100 Minus
CG9368-PB 534 CG9368-RB 4..223 353..134 1100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RD 2423 CG9368-RD 144..481 353..16 1690 100 Minus
CG9368-RA 1828 CG9368-RA 144..365 353..132 1110 100 Minus
CG9368-RB 1813 CG9368-RB 144..363 353..134 1100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19601776..19601977 353..152 1010 100 Minus
3L 28110227 3L 19602039..19602178 155..16 700 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:35:54 has no hits.

BS04606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:02 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PC 1..336 17..352 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:15:56 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PC 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:53 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 144..486 11..353 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:04 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 144..486 11..353 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:04 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601776..19601976 153..353 100 -> Minus
3L 19602042..19602183 11..152 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:53 Download gff for BS04606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19595142..19595283 11..152 98   Minus
arm_3L 19594876..19595076 153..353 100 -> Minus

BS04606.complete Sequence

368 bp (368 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634974

> BS04606.complete
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAT
AGAAGCTTTCTAGACCAT

BS04606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RD 264 CG9368-PD 4..264 16..276 1305 100 Plus
CG9368-RA 549 CG9368-PA 4..225 16..237 1110 100 Plus
CG9368-RB 534 CG9368-PB 4..223 16..235 1100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RD 2423 CG9368-RD 144..481 16..353 1690 100 Plus
CG9368-RA 1828 CG9368-RA 144..365 16..237 1110 100 Plus
CG9368-RB 1813 CG9368-RB 144..363 16..235 1100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19601776..19601977 16..217 1010 100 Plus
3L 28110227 3L 19602039..19602178 214..353 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:54:33 has no hits.

BS04606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:07 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:19 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 123..465 16..358 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:30 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 145..480 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:07 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 123..465 16..358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:32 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 145..480 17..352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:32 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601777..19601976 17..216 100 -> Plus
3L 19602042..19602177 217..352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:30 Download gff for BS04606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594877..19595076 17..216 100 -> Plus
arm_3L 19595142..19595277 217..352 100   Plus

BS04606.pep Sequence

Translation from 16 to 351

> BS04606.pep
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence BS04606.pep has no blast hits.