Clone BS04614 Report

Search the DGRC for BS04614

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG30017-RA
Protein status:BS04614.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS04614.5prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-02

> BS04614.5prime
GAAGTTATCAGTCGACATGCAATTTCAGGGCATTTCATTCCGCTTGCGCG
TAGTTGTTGTTCCCGAACCCCAAGTAGATGTTTTTCGCAATGTTTGCGCA
GTTGTGTGGGCATTTGCATTTGTATCTGAGTGCGACTGTTTGAGTCCGGA
TTGCAGGGGTGCGGATGTGTGTGGAAGTGTGAGTCGGCCAACCTGTTCGG
AACTCAAGGAAAATGAGTCAGCAACGCCGGGCCGGGCCGTGCCGGGCCGG
GCTTTCGCATCCATGAGATACATTTCGAGTAGACGCCGTAAAGTGTTTAC
CGAGGACATCGAGGTCTGCGGGGTCCTTCTTCCTTTCTGAAAGCTTTCTA
GACC

BS04614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30017-PA 324 CG30017-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 01:24:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10871263..10871587 340..16 1625 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:24:06 has no hits.

BS04614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:07 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 17..340 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:03 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 17..340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:27 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:27 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:59:22 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:59:22 Download gff for BS04614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 98   Minus

BS04614.3prime Sequence

354 bp (353 high quality bases) assembled on 2005-12-02

> BS04614.3prime
ATGGTCTAGAAAGCTTTCAGAAAGGAAGAAGGACCCCGCAGACCTCGATG
TCCTCGGTAAACACTTTACGGCGTCTACTCGAAATGTATCTCATGGATGC
GAAAGCCCGGCCCGGCACGGCCCGGCCCGGCGTTGCTGACTCATTTTCCT
TGAGTTCCGAACAGGTTGGCCGACTCACACTTCCACACACATCCGCACCC
CTGCAATCCGGACTCAAACAGTCGCACTCAGATACAAATGCAAATGCCCA
CACAACTGCGCAAACATTGCGAAAAACATCTACTTGGGGTTCGGGAACAA
CAACTACGCGCAAGCGGAATGAAATGCCCTGAAATTGCATGTCGACTGAT
AACT

BS04614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30017-PA 324 CG30017-RA 1..324 340..17 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 09:26:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10871263..10871587 17..341 1625 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:26:21 has no hits.

BS04614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:06 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 17..340 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:01 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 17..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:52 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:52 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:34 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:34 Download gff for BS04614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 98   Plus

BS04614.complete Sequence

356 bp (356 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634976

> BS04614.complete
GAAGTTATCAGTCGACATGCAATTTCAGGGCATTTCATTCCGCTTGCGCG
TAGTTGTTGTTCCCGAACCCCAAGTAGATGTTTTTCGCAATGTTTGCGCA
GTTGTGTGGGCATTTGCATTTGTATCTGAGTGCGACTGTTTGAGTCCGGA
TTGCAGGGGTGCGGATGTGTGTGGAAGTGTGAGTCGGCCAACCTGTTCGG
AACTCAAGGAAAATGAGTCAGCAACGCCGGGCCGGGCCGTGCCGGGCCGG
GCTTTCGCATCCATGAGATACATTTCGAGTAGACGCCGTAAAGTGTTTAC
CGAGGACATCGAGGTCTGCGGGGTCCTTCTTCCTTTCTGAAAGCTTTCTA
GACCAT

BS04614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:57:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:57:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10871263..10871587 340..16 1625 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:14 has no hits.

BS04614.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:10 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 1..324 17..340 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:22 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 781..1110 12..345 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:10 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 781..1110 12..345 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:48 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10871264..10871586 17..339 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:48 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10871264..10871586 17..339 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:10 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758769..6759091 17..339 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:10 Download gff for BS04614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758769..6759091 17..339 100   Minus

BS04614.pep Sequence

Translation from 16 to 339

> BS04614.pep
MQFQGISFRLRVVVVPEPQVDVFRNVCAVVWAFAFVSECDCLSPDCRGAD
VCGSVSRPTCSELKENESATPGRAVPGRAFASMRYISSRRRKVFTEDIEV
CGVLLPF*
Sequence BS04614.pep has no blast hits.