Clone BS04615 Report

Search the DGRC for BS04615

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptRpn13-RA
Protein status:BS04615.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04615.3prime Sequence

909 bp (866 high quality bases) assembled on 2005-12-02

> BS04615.3prime
ATGGTCTAGAAAGCTTCTACTTTTGCTTCTCCTCCTGTTTTTCGGTAGCG
GGATCTGTGTTCTCATCGCGGGCCACTGAAGTTGGGGTTTCGGGATCGCT
GGCCTTCTTCTCGCTGGCGGAGGGTTTGCCACCCATGGTGGCACCGGGGG
GCAGACTCTTCTCCAGAGCACGCACAAAATCCTCTAGATTGCCAGAGAAG
GCGGCGGCCACTGCTTCGTTGGACAACTCGAATTGCTTGATCACAGGTCC
CAGCTGGGCCGATTGCAGGGCACTGGAGAACTGGGCCAGAGCCTGCTGGA
ACTGCGGGGAGGTGATATTGTCCTTGATCTGCTGCTTGCGATCATCGTCC
ACATCCTCCGACTCGGGCAGGTGCACGATCAGCGTCTTGACATGCTCCGG
ATCGGCAATTATCTGATTGATGGCATCGGCGCCGGGTAGGGCCGTCGATA
GGTCAATATTCAGGGATCGTCCGGGGGCATCCGCATCAACGGAGGAGCCG
GCACCTTCGCCGACCTGCGAGTTCACATTGCTGCTGCTGCGGCTGCTGCC
CGATTTCGATGGAGCGCTCGGAGTGCGCGGCACACTGACGTTTTCGGGCG
TCTGCAAGGCCGATGCCCCACCGCCACCCGATGAGGAGGTGTTGCGCGAC
GAGGGCGTCCGGGAGTTCATTTGGCCCAGCAGCGAGCTGAGACCACCCAT
CTGGCCAACGCCGCCGAAGAGCTGCATCAGCTGCTGCTGCGACATGTTGT
TGAGCATGTACTGGAGGTCGCCGTCGTTGCTGCCGCCGCCGCCGCGCTGG
TGGGCGGATGGAGGGTTGTTCAGCAGCTCGTTGATGCGGCGGCACTGCTC
GTCGTCCTTGTCCGTCTTGGGCTCCTGCATCCAGAAGAACATGCGGCGTG
TCGATGACT

BS04615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-PA 1170 CG13349-RA 278..1170 909..17 4465 100 Minus
CG13349-PB 1170 CG13349-RB 278..1170 909..17 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 398..1290 909..17 4465 100 Minus
Rpn13-RB 1390 CG13349-RB 398..1290 909..17 4465 100 Minus
Rpn13-RA 1377 CG13349-RA 385..1277 909..17 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13958645..13959100 17..472 2280 100 Plus
2R 25286936 2R 13959568..13959811 666..909 1220 100 Plus
2R 25286936 2R 13959204..13959398 471..665 975 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:50 has no hits.

BS04615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:07 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PA 278..1170 17..909 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:04 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PB 278..1170 17..909 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:34 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 385..1280 11..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:10 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 385..1280 11..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:10 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13958642..13959099 11..471 99 <- Plus
2R 13959205..13959398 472..665 100 <- Plus
2R 13959568..13959811 666..909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:34 Download gff for BS04615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846147..9846604 11..471 99 <- Plus
arm_2R 9846710..9846903 472..665 100 <- Plus
arm_2R 9847073..9847316 666..909 100   Plus

BS04615.5prime Sequence

844 bp (842 high quality bases) assembled on 2005-11-29

> BS04615.5prime
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCG

BS04615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-PA 1170 CG13349-RA 1..828 17..844 4140 100 Plus
CG13349-PB 1170 CG13349-RB 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 120..948 16..844 4145 100 Plus
Rpn13-RB 1390 CG13349-RB 120..948 16..844 4145 100 Plus
Rpn13-RA 1377 CG13349-RA 107..935 16..844 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13959568..13960089 537..16 2610 100 Minus
2R 25286936 2R 13959204..13959398 732..538 975 100 Minus
2R 25286936 2R 13958987..13959100 844..731 570 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:46:37 has no hits.

BS04615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:08 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:06 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PB 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:27 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 107..935 16..844 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:53 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 107..935 16..844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:53 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13958987..13959099 732..844 100 <- Minus
2R 13959205..13959398 538..731 100 <- Minus
2R 13959568..13960089 16..537 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:27 Download gff for BS04615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846492..9846604 732..844 100 <- Minus
arm_2R 9846710..9846903 538..731 100 <- Minus
arm_2R 9847073..9847594 16..537 100   Minus

BS04615.complete Sequence

1202 bp (1202 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634977

> BS04615.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCCGCA
GTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCCCAGC
TGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGCCGCC
GCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGAGTCT
GCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAGAAGG
CCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACACAGAT
CCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGTAGAAGCTTTCTAGACC
AT

BS04615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1170 CG13349-PF 1..1170 17..1186 5850 100 Plus
Rpn13-RB 1170 CG13349-PB 1..1170 17..1186 5850 100 Plus
Rpn13-RA 1170 CG13349-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 120..1290 16..1186 5855 100 Plus
Rpn13-RB 1390 CG13349-RB 120..1290 16..1186 5855 100 Plus
Rpn13-RA 1377 CG13349-RA 107..1277 16..1186 5855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13959568..13960089 537..16 2610 100 Minus
2R 25286936 2R 13958645..13959100 1186..731 2280 100 Minus
2R 25286936 2R 13959204..13959398 732..538 975 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:25:57 has no hits.

BS04615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:11 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 1..1170 17..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:24 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 107..1280 16..1192 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:28 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 114..1277 23..1186 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:11 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 107..1280 16..1192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:46 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 114..1277 23..1186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:46 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958645..13959099 732..1186 100 <- Minus
2R 13959205..13959398 538..731 100 <- Minus
2R 13959568..13960082 23..537 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:28 Download gff for BS04615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846150..9846604 732..1186 100 <- Minus
arm_2R 9846710..9846903 538..731 100 <- Minus
arm_2R 9847073..9847587 23..537 100   Minus

BS04615.pep Sequence

Translation from 16 to 1185

> BS04615.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL
PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL
AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT
MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQK*

BS04615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PF 389 CG13349-PF 1..389 1..389 2001 100 Plus
Rpn13-PB 389 CG13349-PB 1..389 1..389 2001 100 Plus
Rpn13-PA 389 CG13349-PA 1..389 1..389 2001 100 Plus
Rpn13-PE 424 CG13349-PE 1..424 1..389 1955 91.7 Plus
Rpn13-PD 424 CG13349-PD 1..424 1..389 1955 91.7 Plus