Clone Sequence Records
BS04615.3prime Sequence
909 bp (866 high quality bases) assembled on 2005-12-02
> BS04615.3prime
ATGGTCTAGAAAGCTTCTACTTTTGCTTCTCCTCCTGTTTTTCGGTAGCG
GGATCTGTGTTCTCATCGCGGGCCACTGAAGTTGGGGTTTCGGGATCGCT
GGCCTTCTTCTCGCTGGCGGAGGGTTTGCCACCCATGGTGGCACCGGGGG
GCAGACTCTTCTCCAGAGCACGCACAAAATCCTCTAGATTGCCAGAGAAG
GCGGCGGCCACTGCTTCGTTGGACAACTCGAATTGCTTGATCACAGGTCC
CAGCTGGGCCGATTGCAGGGCACTGGAGAACTGGGCCAGAGCCTGCTGGA
ACTGCGGGGAGGTGATATTGTCCTTGATCTGCTGCTTGCGATCATCGTCC
ACATCCTCCGACTCGGGCAGGTGCACGATCAGCGTCTTGACATGCTCCGG
ATCGGCAATTATCTGATTGATGGCATCGGCGCCGGGTAGGGCCGTCGATA
GGTCAATATTCAGGGATCGTCCGGGGGCATCCGCATCAACGGAGGAGCCG
GCACCTTCGCCGACCTGCGAGTTCACATTGCTGCTGCTGCGGCTGCTGCC
CGATTTCGATGGAGCGCTCGGAGTGCGCGGCACACTGACGTTTTCGGGCG
TCTGCAAGGCCGATGCCCCACCGCCACCCGATGAGGAGGTGTTGCGCGAC
GAGGGCGTCCGGGAGTTCATTTGGCCCAGCAGCGAGCTGAGACCACCCAT
CTGGCCAACGCCGCCGAAGAGCTGCATCAGCTGCTGCTGCGACATGTTGT
TGAGCATGTACTGGAGGTCGCCGTCGTTGCTGCCGCCGCCGCCGCGCTGG
TGGGCGGATGGAGGGTTGTTCAGCAGCTCGTTGATGCGGCGGCACTGCTC
GTCGTCCTTGTCCGTCTTGGGCTCCTGCATCCAGAAGAACATGCGGCGTG
TCGATGACT
BS04615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13349-PA | 1170 | CG13349-RA | 278..1170 | 909..17 | 4465 | 100 | Minus |
CG13349-PB | 1170 | CG13349-RB | 278..1170 | 909..17 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 398..1290 | 909..17 | 4465 | 100 | Minus |
Rpn13-RB | 1390 | CG13349-RB | 398..1290 | 909..17 | 4465 | 100 | Minus |
Rpn13-RA | 1377 | CG13349-RA | 385..1277 | 909..17 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13958645..13959100 | 17..472 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 13959568..13959811 | 666..909 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 13959204..13959398 | 471..665 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:50 has no hits.
BS04615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:07 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PA | 278..1170 | 17..909 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:04 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PB | 278..1170 | 17..909 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:34 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 385..1280 | 11..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:10 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 385..1280 | 11..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:10 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958642..13959099 | 11..471 | 99 | <- | Plus |
2R | 13959205..13959398 | 472..665 | 100 | <- | Plus |
2R | 13959568..13959811 | 666..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:34 Download gff for
BS04615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846147..9846604 | 11..471 | 99 | <- | Plus |
arm_2R | 9846710..9846903 | 472..665 | 100 | <- | Plus |
arm_2R | 9847073..9847316 | 666..909 | 100 | | Plus |
BS04615.5prime Sequence
844 bp (842 high quality bases) assembled on 2005-11-29
> BS04615.5prime
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCG
BS04615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13349-PA | 1170 | CG13349-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
CG13349-PB | 1170 | CG13349-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 120..948 | 16..844 | 4145 | 100 | Plus |
Rpn13-RB | 1390 | CG13349-RB | 120..948 | 16..844 | 4145 | 100 | Plus |
Rpn13-RA | 1377 | CG13349-RA | 107..935 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 13959204..13959398 | 732..538 | 975 | 100 | Minus |
2R | 25286936 | 2R | 13958987..13959100 | 844..731 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:46:37 has no hits.
BS04615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:08 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:06 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PB | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:52:27 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 107..935 | 16..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:53 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 107..935 | 16..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:53 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958987..13959099 | 732..844 | 100 | <- | Minus |
2R | 13959205..13959398 | 538..731 | 100 | <- | Minus |
2R | 13959568..13960089 | 16..537 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:52:27 Download gff for
BS04615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846492..9846604 | 732..844 | 100 | <- | Minus |
arm_2R | 9846710..9846903 | 538..731 | 100 | <- | Minus |
arm_2R | 9847073..9847594 | 16..537 | 100 | | Minus |
BS04615.complete Sequence
1202 bp (1202 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634977
> BS04615.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCCGCA
GTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCCCAGC
TGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGCCGCC
GCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGAGTCT
GCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAGAAGG
CCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACACAGAT
CCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGTAGAAGCTTTCTAGACC
AT
BS04615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1170 | CG13349-PF | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Rpn13-RB | 1170 | CG13349-PB | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Rpn13-RA | 1170 | CG13349-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 120..1290 | 16..1186 | 5855 | 100 | Plus |
Rpn13-RB | 1390 | CG13349-RB | 120..1290 | 16..1186 | 5855 | 100 | Plus |
Rpn13-RA | 1377 | CG13349-RA | 107..1277 | 16..1186 | 5855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 13958645..13959100 | 1186..731 | 2280 | 100 | Minus |
2R | 25286936 | 2R | 13959204..13959398 | 732..538 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:57 has no hits.
BS04615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:11 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 1..1170 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:24 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 107..1280 | 16..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:28 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 114..1277 | 23..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:11 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 107..1280 | 16..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:46 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 114..1277 | 23..1186 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:46 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958645..13959099 | 732..1186 | 100 | <- | Minus |
2R | 13959205..13959398 | 538..731 | 100 | <- | Minus |
2R | 13959568..13960082 | 23..537 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:28 Download gff for
BS04615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846150..9846604 | 732..1186 | 100 | <- | Minus |
arm_2R | 9846710..9846903 | 538..731 | 100 | <- | Minus |
arm_2R | 9847073..9847587 | 23..537 | 100 | | Minus |
BS04615.pep Sequence
Translation from 16 to 1185
> BS04615.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL
PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL
AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT
MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQK*
BS04615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-PF | 389 | CG13349-PF | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PB | 389 | CG13349-PB | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PA | 389 | CG13349-PA | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PE | 424 | CG13349-PE | 1..424 | 1..389 | 1955 | 91.7 | Plus |
Rpn13-PD | 424 | CG13349-PD | 1..424 | 1..389 | 1955 | 91.7 | Plus |