Clone Sequence Records
BS04617.3prime Sequence
882 bp (852 high quality bases) assembled on 2005-12-02
> BS04617.3prime
ATGGTCTAGAAAGCTTCTATTCCTGATTCAGGTTCTTGATCACGTAATTA
ACAATGAGGGCAAAAATTGCAAAGCAGATAATGATCACCAGGTTTGAATA
GACGGACTGCCAGTTTAGATAGGAGTTCCGTGCACTATTCTGGACCGCCG
CTCCTCCGCCGCTGGCCAAATCCGCCTGACCCGCCGCCCCGCCATCGATT
GCGTCCGCTGCATTCAGTGGATTGGCCAAGCCGCCCACCGCCAGATTGCC
ATCCGCAGATGCCAGGCTCGCTCCGTTGGCCAGTCCGTTGGAACGCTTTA
CTCCATTGGCAGCGGGTCCGTCCACAGCAGCTGCCGCCTGTGTTCCTCGC
AGCCGCTGCTTGATCTCTTCGACTATCTCCGGAAACAGCTCACAGAAGTT
GGTGTTGCGCAGGTTAAATGCTAGTGATTTTTGAGCAAACATTTGCTTGT
CATAGTTCGATGATTCGATGGATCCGAGTGTGGGTGTGCTCTCCAGCATG
AAGCTCAGCAGTCCAGTGAGAATGGTGCCTACGCACCAAGTCGGGTTCCA
AGTGTCCGGATGAAAATCTGATATACTCAAACACAGTCTGGTGTTGGTCT
TGAAGCGACCGTTCGGCGTCAGCATGTAGATGGATGGCGGCTTGAATGGG
AACTCGCGCGGAAAGAGCAGGGTGCCGTGGTAGTAGCCGCCGTAGTAGGG
CGAGTCCTCCGGCCCCTTGACGCAGTAGTGCCACTCGAGGATGTTGTTGG
GCAGCGGCTCGGCGGTTATGTACGGCAGGGGATCCCGCTTGAGGCGCATA
TAGTCCTGCTTCATGCGCGACACAGCAGTGGGTTGCTTCCGGCCGCCGGA
CGTCGACGACGAGGACATGTCGACTGATAACT
BS04617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1396 | 869..15 | 4275 | 100 | Minus |
| CG5823-RA | 1850 | CG5823-RA | 603..1457 | 869..15 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532718..17533200 | 15..497 | 2415 | 100 | Plus |
| 3R | 32079331 | 3R | 17533623..17533924 | 568..869 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 17533260..17533334 | 497..571 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:08:16 has no hits.
BS04617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:10 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:07 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:17 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1459 | 11..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:13 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1459 | 11..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:13 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532716..17533199 | 11..496 | 99 | <- | Plus |
| 3R | 17533260..17533330 | 497..567 | 100 | <- | Plus |
| 3R | 17533623..17533927 | 568..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:17 Download gff for
BS04617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358438..13358921 | 11..496 | 99 | <- | Plus |
| arm_3R | 13358982..13359052 | 497..567 | 100 | <- | Plus |
| arm_3R | 13359345..13359649 | 568..876 | 98 | | Plus |
BS04617.5prime Sequence
882 bp (830 high quality bases) assembled on 2005-11-29
> BS04617.5prime
GAAGTTATCAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGC
AACCCACTGCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGG
GATCCCCTGCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGA
GTGGCACTACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGGCGGCT
ACTACCACGGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCA
TCCATCTACATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCAGACT
GTGTTTGAGTATATCAGATTTTCATCCGGACACTTGGAACCCGACTTGGT
GCGTAGGCACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGAGCACA
CCCACACTCGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGC
TCAAAAATCACTAGCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGT
TTCCGGAGATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACACAGGCG
GCAGCTGCTGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGG
ACTGGCCAACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCGGTGG
GCGGCTTGGCCAATCCACTGAATGCAGCGGACGCAATCGATGGCGGGGCG
GCGGGTCAGGCGGATTTGGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAG
TGCACGGAACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCTGGTGA
TCATTATCTGCTTTGCAATTTTTGCCCTCATTGTTTATTACGTGATCAAG
AACCTGAATCANGAATAGAAGCTTTCTAGACC
BS04617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 1..852 | 17..868 | 4216 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1396 | 16..870 | 4249 | 99.8 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1457 | 16..870 | 4249 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532718..17533200 | 870..388 | 2389 | 99.6 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 317..16 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 388..314 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:41:14 has no hits.
BS04617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:11 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:08 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 10:59:58 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1459 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:16 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1459 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:16 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532716..17533199 | 389..874 | 99 | <- | Minus |
| 3R | 17533260..17533330 | 318..388 | 100 | <- | Minus |
| 3R | 17533623..17533927 | 9..317 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 10:59:58 Download gff for
BS04617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358438..13358921 | 389..874 | 99 | <- | Minus |
| arm_3R | 13358982..13359052 | 318..388 | 100 | <- | Minus |
| arm_3R | 13359345..13359649 | 9..317 | 98 | | Minus |
BS04617.complete Sequence
884 bp (884 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634978
> BS04617.complete
GAAGTTATCAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGC
AACCCACTGCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGG
GATCCCCTGCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGA
GTGGCACTACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGGCGGCT
ACTACCACGGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCA
TCCATCTACATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCAGACT
GTGTTTGAGTATATCAGATTTTCATCCGGACACTTGGAACCCGACTTGGT
GCGTAGGCACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGAGCACA
CCCACACTCGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGC
TCAAAAATCACTAGCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGT
TTCCGGAGATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACACAGGCG
GCAGCTGCTGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGG
ACTGGCCAACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCGGTGG
GCGGCTTGGCCAATCCACTGAATGCAGCGGACGCAATCGATGGCGGGGCG
GCGGGTCAGGCGGATTTGGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAG
TGCACGGAACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCTGGTGA
TCATTATCTGCTTTGCAATTTTTGCCCTCATTGTTAATTACGTGATCAAG
AACCTGAATCAGGAATAGAAGCTTTCTAGACCAT
BS04617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 852 | CG5823-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG5823-RA | 852 | CG5823-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1396 | 16..870 | 4275 | 100 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1457 | 16..870 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532718..17533200 | 870..388 | 2415 | 100 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 317..16 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 388..314 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:05 has no hits.
BS04617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:13 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:26 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1447 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:11 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 604..1455 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:13 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1447 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:49 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 604..1455 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:49 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532720..17533199 | 389..868 | 100 | <- | Minus |
| 3R | 17533260..17533330 | 318..388 | 100 | <- | Minus |
| 3R | 17533623..17533923 | 17..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:11 Download gff for
BS04617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358442..13358921 | 389..868 | 100 | <- | Minus |
| arm_3R | 13358982..13359052 | 318..388 | 100 | <- | Minus |
| arm_3R | 13359345..13359645 | 17..317 | 100 | | Minus |
BS04617.pep Sequence
Translation from 16 to 867
> BS04617.pep
MSSSSTSGGRKQPTAVSRMKQDYMRLKRDPLPYITAEPLPNNILEWHYCV
KGPEDSPYYGGYYHGTLLFPREFPFKPPSIYMLTPNGRFKTNTRLCLSIS
DFHPDTWNPTWCVGTILTGLLSFMLESTPTLGSIESSNYDKQMFAQKSLA
FNLRNTNFCELFPEIVEEIKQRLRGTQAAAAVDGPAANGVKRSNGLANGA
SLASADGNLAVGGLANPLNAADAIDGGAAGQADLASGGGAAVQNSARNSY
LNWQSVYSNLVIIICFAIFALIVNYVIKNLNQE*
BS04617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PB | 283 | CG5823-PB | 1..283 | 1..283 | 1490 | 100 | Plus |
| CG5823-PA | 283 | CG5823-PA | 1..283 | 1..283 | 1490 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 2..115 | 15..129 | 178 | 31.1 | Plus |
| eff-PB | 147 | CG7425-PB | 2..115 | 15..129 | 178 | 31.1 | Plus |
| eff-PA | 147 | CG7425-PA | 2..115 | 15..129 | 178 | 31.1 | Plus |
