Clone BS04618 Report

Search the DGRC for BS04618

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS04618.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS04618.5prime Sequence

213 bp (174 high quality bases) assembled on 2005-12-02

> BS04618.5prime
GAAGTTATCAGTCGACATGTTAACTACACAGCAAACACACCACCTCCCCA
CACACACACACACACACACCAACATTCACATCGTAGACTGTCGCAGCTGG
TGTCGAAGTGTCGCAAATCACGATTTTCGATTCGGGCTTTGCGGGATCTC
GGGCATGCTGCCTTTACGCCCCATAAGACGTGCCACCCATTGGGGCAACC
GGAAATCAAAATC

BS04618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32709-PA 318 CG32709-RA 1..178 17..194 890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
rdgA-RI 10147 CG42667-RI 7643..7838 17..213 930 98.5 Plus
rdgA-RH 8292 CG42667-RH 7649..7844 17..213 930 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9026972..9027167 17..213 905 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 11:16:33 has no hits.

BS04618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:13 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32709-PA 1..196 17..213 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:11 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32709-PA 1..196 17..213 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:57 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7649..7844 17..213 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:43 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7649..7844 17..213 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:43 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9026972..9027157 17..202 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:57 Download gff for BS04618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8921005..8921190 17..202 98 -> Plus

BS04618.3prime Sequence

214 bp (180 high quality bases) assembled on 2005-12-02

> BS04618.3prime
ATGGTCTAGAAAGCTTTTAAAAATTTTGAAAGTTAGTTACAATATAATTT
CCTTTTTGTTGACATAAACAATCGCCTGATATTTTGACCGCAGCTGAAGA
ATTCATTAGTTGCCGCAGTCGGTGTGGATTGGTGTTACGATTTTGGATTC
CGGTTGCCCAATGGGTGGCACGTCTTATGGGGCGTAAAGGCAGCATGCCC
GAGATCCCGCAAAG

BS04618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32709-PA 318 CG32709-RA 121..318 214..17 990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
rdgA-RI 10147 CG42667-RI 7763..7962 214..15 1000 100 Minus
rdgA-RH 8292 CG42667-RH 7769..7968 214..15 1000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9027092..9027291 214..15 1000 100 Minus
Blast to na_te.dros performed on 2015-02-06 13:22:08 has no hits.

BS04618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:12 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32709-PA 121..318 17..214 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:10 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32709-PA 121..318 17..214 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:03 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7769..7975 7..214 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:02 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7769..7975 7..214 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:02 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9027092..9027298 7..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:03 Download gff for BS04618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8921125..8921331 7..214 98   Minus

BS04618.complete Sequence

350 bp assembled on 2007-10-17

> BS04618.complete
GAAGTTATCAGTCGACATGTTAACTACACAGCAAACACACCACCTCCCCA
CACACACACACACACACACCAACATTCACATCGTAGACTGTCGCAGCTGG
TGTCGAAGTGTCGCAAATCACGATTTTCGATTCGGGCTTTGCGGGATCTC
GGGCATGCTGCCTTTACGCCCCATAAGACGTGCCACCCATTGGGCAACCG
GAATCCAAAATCGTAACACCAATCCACACCGACTGCGGCAACTAATGAAT
TCTTCAGCTGCGGTCAAAATATCAGGCGATTGTTTATGTCAACAAAAAGG
AAATTATATTGTAACTAACTTTCAAAATTTTTAAAAGCTTTCTAGACCAT

BS04618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 13:07:09 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
rdgA-RI 10147 CG42667-RI 7643..7962 17..336 1600 100 Plus
rdgA-RH 8292 CG42667-RH 7649..7968 17..336 1600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9026972..9027291 17..336 1600 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:07:09 has no hits.

BS04618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:05:14 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:00 Download gff for BS04618.complete
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7654..7964 22..332 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:05:14 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:18 Download gff for BS04618.complete
Subject Subject Range Query Range Percent Splice Strand
rdgA-RH 7654..7964 22..332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:18 Download gff for BS04618.complete
Subject Subject Range Query Range Percent Splice Strand
X 9026977..9027287 22..332 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:00 Download gff for BS04618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8921010..8921320 22..332 100   Plus

BS04618.pep Sequence

Translation from 16 to 333

> BS04618.pep
MLTTQQTHHLPTHTHTHTNIHIVDCRSWCRSVANHDFRFGLCGISGMLPL
RPIRRATHWATGIQNRNTNPHRLRQLMNSSAAVKISGDCLCQQKGNYIVT
NFQNF*
Sequence BS04618.pep has no blast hits.