Clone Sequence Records
BS04618.5prime Sequence
213 bp (174 high quality bases) assembled on 2005-12-02
> BS04618.5prime
GAAGTTATCAGTCGACATGTTAACTACACAGCAAACACACCACCTCCCCA
CACACACACACACACACACCAACATTCACATCGTAGACTGTCGCAGCTGG
TGTCGAAGTGTCGCAAATCACGATTTTCGATTCGGGCTTTGCGGGATCTC
GGGCATGCTGCCTTTACGCCCCATAAGACGTGCCACCCATTGGGGCAACC
GGAAATCAAAATC
BS04618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32709-PA | 318 | CG32709-RA | 1..178 | 17..194 | 890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgA-RI | 10147 | CG42667-RI | 7643..7838 | 17..213 | 930 | 98.5 | Plus |
rdgA-RH | 8292 | CG42667-RH | 7649..7844 | 17..213 | 930 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9026972..9027167 | 17..213 | 905 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:16:33 has no hits.
BS04618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:13 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32709-PA | 1..196 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:11 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32709-PA | 1..196 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:57 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7649..7844 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:43 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7649..7844 | 17..213 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:43 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9026972..9027157 | 17..202 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:57 Download gff for
BS04618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8921005..8921190 | 17..202 | 98 | -> | Plus |
BS04618.3prime Sequence
214 bp (180 high quality bases) assembled on 2005-12-02
> BS04618.3prime
ATGGTCTAGAAAGCTTTTAAAAATTTTGAAAGTTAGTTACAATATAATTT
CCTTTTTGTTGACATAAACAATCGCCTGATATTTTGACCGCAGCTGAAGA
ATTCATTAGTTGCCGCAGTCGGTGTGGATTGGTGTTACGATTTTGGATTC
CGGTTGCCCAATGGGTGGCACGTCTTATGGGGCGTAAAGGCAGCATGCCC
GAGATCCCGCAAAG
BS04618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32709-PA | 318 | CG32709-RA | 121..318 | 214..17 | 990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgA-RI | 10147 | CG42667-RI | 7763..7962 | 214..15 | 1000 | 100 | Minus |
rdgA-RH | 8292 | CG42667-RH | 7769..7968 | 214..15 | 1000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9027092..9027291 | 214..15 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:22:08 has no hits.
BS04618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:12 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32709-PA | 121..318 | 17..214 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:10 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32709-PA | 121..318 | 17..214 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:03 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7769..7975 | 7..214 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:02 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7769..7975 | 7..214 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:02 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9027092..9027298 | 7..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:03 Download gff for
BS04618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8921125..8921331 | 7..214 | 98 | | Minus |
BS04618.complete Sequence
350 bp assembled on 2007-10-17
> BS04618.complete
GAAGTTATCAGTCGACATGTTAACTACACAGCAAACACACCACCTCCCCA
CACACACACACACACACACCAACATTCACATCGTAGACTGTCGCAGCTGG
TGTCGAAGTGTCGCAAATCACGATTTTCGATTCGGGCTTTGCGGGATCTC
GGGCATGCTGCCTTTACGCCCCATAAGACGTGCCACCCATTGGGCAACCG
GAATCCAAAATCGTAACACCAATCCACACCGACTGCGGCAACTAATGAAT
TCTTCAGCTGCGGTCAAAATATCAGGCGATTGTTTATGTCAACAAAAAGG
AAATTATATTGTAACTAACTTTCAAAATTTTTAAAAGCTTTCTAGACCAT
BS04618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 13:07:09 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdgA-RI | 10147 | CG42667-RI | 7643..7962 | 17..336 | 1600 | 100 | Plus |
rdgA-RH | 8292 | CG42667-RH | 7649..7968 | 17..336 | 1600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9026972..9027291 | 17..336 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:07:09 has no hits.
BS04618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:05:14 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:00 Download gff for
BS04618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7654..7964 | 22..332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:05:14 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:18 Download gff for
BS04618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdgA-RH | 7654..7964 | 22..332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:18 Download gff for
BS04618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9026977..9027287 | 22..332 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:00 Download gff for
BS04618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8921010..8921320 | 22..332 | 100 | | Plus |
BS04618.pep Sequence
Translation from 16 to 333
> BS04618.pep
MLTTQQTHHLPTHTHTHTNIHIVDCRSWCRSVANHDFRFGLCGISGMLPL
RPIRRATHWATGIQNRNTNPHRLRQLMNSSAAVKISGDCLCQQKGNYIVT
NFQNF*
Sequence BS04618.pep has no blast hits.