Clone BS04620 Report

Search the DGRC for BS04620

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptVha44-RA
Protein status:BS04620.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04620.3prime Sequence

943 bp (771 high quality bases) assembled on 2005-12-02

> BS04620.3prime
ATGGTCTAGAAAGCTTTTAGACCTTGGCCTGCTCCACCATATCGATGTTG
ACCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCC
GGGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGC
CATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACG
CTCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCC
GTATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGA
GGGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGA
CCAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCC
GGCAGCCAGCTCCTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGC
GCTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTC
ACGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCG
GGGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAG
CCATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCC
AGGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAG
ACTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGT
TATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGC
TTGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTT
GGCCATGTCCCATTGGAAGCGGGTCAAGTACTGGGGTAGTTCGGTGTTGT
TGGGCATCAAGTTCTCGTGCAGCTTGTCCCGCTGATCCTCGAG

BS04620.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8048-PA 1167 Vha44-RA 241..1167 943..17 4585 99.7 Minus
CG8048-PB 1167 Vha44-RB 241..1167 943..17 4585 99.7 Minus
CG8048-PD 2145 Vha44-RD 1267..2145 895..17 4395 100 Minus
CG8048-PC 1329 Vha44-RC 452..1329 894..17 4390 100 Minus
CG8048-PD 2145 Vha44-RD 241..289 943..895 195 95.9 Minus
CG8048-PC 1329 Vha44-RC 241..289 943..895 195 95.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 452..1378 943..17 4605 99.8 Minus
Vha44-RA 1470 CG8048-RA 397..1323 943..17 4605 99.8 Minus
Vha44-RC 2693 CG8048-RC 663..1540 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 352..608 1285 100 Plus
2R 25286936 2R 16326974..16327160 708..894 935 100 Plus
2R 25286936 2R 16326135..16326275 116..256 705 100 Plus
2R 25286936 2R 16326810..16326909 608..707 500 100 Plus
2R 25286936 2R 16325966..16326064 17..115 495 100 Plus
2R 25286936 2R 16326333..16326430 255..352 490 100 Plus
2R 25286936 2R 16333034..16333082 895..943 215 95.9 Plus
Blast to na_te.dros performed on 2015-02-11 18:03:30 has no hits.

BS04620.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:14 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-PA 241..1167 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:13 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8048-PB 241..1167 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:55:43 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 397..1323 17..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:18 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 397..1323 17..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:18 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16325966..16326064 17..115 100 <- Plus
2R 16326135..16326273 116..254 100 <- Plus
2R 16326333..16326430 255..352 100 <- Plus
2R 16326493..16326748 353..608 100 <- Plus
2R 16326811..16326909 609..707 100 <- Plus
2R 16326974..16327160 708..894 100 <- Plus
2R 16333034..16333082 895..943 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:55:43 Download gff for BS04620.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12214316..12214414 609..707 100 <- Plus
arm_2R 12213471..12213569 17..115 100 <- Plus
arm_2R 12213640..12213778 116..254 100 <- Plus
arm_2R 12213838..12213935 255..352 100 <- Plus
arm_2R 12213998..12214253 353..608 100 <- Plus
arm_2R 12214479..12214665 708..894 100 <- Plus
arm_2R 12220539..12220587 895..943 95   Plus

BS04620.5prime Sequence

954 bp (774 high quality bases) assembled on 2005-11-29

> BS04620.5prime
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTANCACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAGGGCGCTGCGCGTGTTTGTGGGATCCGTGCTGAGATACG
GACT

BS04620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8048-PA 1167 Vha44-RA 1..938 17..954 4596 99.5 Plus
CG8048-PB 1167 Vha44-RB 1..938 17..954 4596 99.5 Plus
CG8048-PD 2145 Vha44-RD 1267..1916 305..954 3156 99.3 Plus
CG8048-PC 1329 Vha44-RC 452..1100 306..954 3151 99.3 Plus
CG8048-PD 2145 Vha44-RD 1..289 17..305 1445 100 Plus
CG8048-PC 1329 Vha44-RC 1..289 17..305 1445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 212..1149 17..954 4634 99.6 Plus
Vha44-RA 1470 CG8048-RA 157..1094 17..954 4634 99.6 Plus
Vha44-RC 2693 CG8048-RC 663..1311 306..954 3189 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 848..592 1259 99.2 Minus
2R 25286936 2R 16326974..16327160 492..306 935 100 Minus
2R 25286936 2R 16333034..16333190 305..149 785 100 Minus
2R 25286936 2R 16333276..16333412 153..17 685 100 Minus
2R 25286936 2R 16326810..16326909 592..493 500 100 Minus
2R 25286936 2R 16326333..16326430 945..848 460 98 Minus
Blast to na_te.dros performed on 2015-02-13 02:48:49 has no hits.

BS04620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:15 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:14 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8048-PB 1..938 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:07 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 150..1094 9..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:29:30 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 150..1094 9..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:29:30 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16333034..16333187 152..305 100 <- Minus
2R 16333278..16333419 9..151 97   Minus
2R 16326330..16326430 848..948 97 <- Minus
2R 16326493..16326748 592..847 99 <- Minus
2R 16326811..16326909 493..591 100 <- Minus
2R 16326974..16327160 306..492 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:07 Download gff for BS04620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12220539..12220692 152..305 100 <- Minus
arm_2R 12220783..12220924 9..151 97   Minus
arm_2R 12213835..12213935 848..948 97 <- Minus
arm_2R 12213998..12214253 592..847 99 <- Minus
arm_2R 12214316..12214414 493..591 100 <- Minus
arm_2R 12214479..12214665 306..492 100 <- Minus

BS04620.complete Sequence

1199 bp (1199 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634979

> BS04620.complete
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTTTGTGGAATCCGTGCTGAGATACG
GACTGCCTGTTAACTTCCAGGCCATCTTGATCGAGCCCAACAAGAAGAGC
GTGAAGCGTCTGCGCGATGTGCTCAACCAGCTGTATGGTCACTTGGATGG
CGCCTCCGCCGGCGGTGCTGTCAGCAGTGCTGATAACGTAGACATCCCCG
GCCTGGGCTTTGGCCAGTCCGAATACTTCCCCTATGTGTTCTACAAGGTC
AACATCGATATGGTGGAGCAGGCCAAGGTCTAAAAGCTTTCTAGACCAT

BS04620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1167 CG8048-PB 1..1167 17..1183 5835 100 Plus
Vha44-RA 1167 CG8048-PA 1..1167 17..1183 5835 100 Plus
Vha44-RC 1329 CG8048-PC 452..1329 306..1183 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 212..1378 17..1183 5835 100 Plus
Vha44-RA 1470 CG8048-RA 157..1323 17..1183 5835 100 Plus
Vha44-RC 2693 CG8048-RC 663..1540 306..1183 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 848..592 1285 100 Minus
2R 25286936 2R 16326974..16327160 492..306 935 100 Minus
2R 25286936 2R 16333034..16333190 305..149 785 100 Minus
2R 25286936 2R 16326135..16326275 1084..944 705 100 Minus
2R 25286936 2R 16333276..16333412 153..17 685 100 Minus
2R 25286936 2R 16326810..16326909 592..493 500 100 Minus
2R 25286936 2R 16325966..16326064 1183..1085 495 100 Minus
2R 25286936 2R 16326333..16326430 945..848 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:00:58 has no hits.

BS04620.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:14 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 1..1167 17..1183 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:28 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 196..1374 5..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:04 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 157..1321 17..1181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:14 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 196..1374 5..1183 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:52 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 157..1321 17..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:52 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16325968..16326064 1085..1181 100 <- Minus
2R 16326135..16326273 946..1084 100 <- Minus
2R 16326333..16326430 848..945 100 <- Minus
2R 16326493..16326748 592..847 100 <- Minus
2R 16326811..16326909 493..591 100 <- Minus
2R 16326974..16327160 306..492 100 <- Minus
2R 16333034..16333187 152..305 100 <- Minus
2R 16333278..16333412 17..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:04 Download gff for BS04620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12213838..12213935 848..945 100 <- Minus
arm_2R 12213640..12213778 946..1084 100 <- Minus
arm_2R 12213473..12213569 1085..1181 100 <- Minus
arm_2R 12213998..12214253 592..847 100 <- Minus
arm_2R 12214316..12214414 493..591 100 <- Minus
arm_2R 12214479..12214665 306..492 100 <- Minus
arm_2R 12220539..12220692 152..305 100 <- Minus
arm_2R 12220783..12220917 17..151 100   Minus

BS04620.pep Sequence

Translation from 16 to 1182

> BS04620.pep
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKV*

BS04620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-PB 388 CG8048-PB 1..388 1..388 2008 100 Plus
Vha44-PA 388 CG8048-PA 1..388 1..388 2008 100 Plus
Vha44-PC 442 CG8048-PC 1..442 1..388 1895 86.2 Plus
Vha44-PF 836 CG8048-PF 546..836 98..388 1490 100 Plus
Vha44-PE 836 CG8048-PE 546..836 98..388 1490 100 Plus
Vha44-PF 836 CG8048-PF 1..100 1..100 516 97 Plus