Clone Sequence Records
BS04620.3prime Sequence
943 bp (771 high quality bases) assembled on 2005-12-02
> BS04620.3prime
ATGGTCTAGAAAGCTTTTAGACCTTGGCCTGCTCCACCATATCGATGTTG
ACCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCC
GGGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGC
CATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACG
CTCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCC
GTATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGA
GGGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGA
CCAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCC
GGCAGCCAGCTCCTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGC
GCTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTC
ACGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCG
GGGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAG
CCATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCC
AGGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAG
ACTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGT
TATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGC
TTGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTT
GGCCATGTCCCATTGGAAGCGGGTCAAGTACTGGGGTAGTTCGGTGTTGT
TGGGCATCAAGTTCTCGTGCAGCTTGTCCCGCTGATCCTCGAG
BS04620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8048-PA | 1167 | Vha44-RA | 241..1167 | 943..17 | 4585 | 99.7 | Minus |
CG8048-PB | 1167 | Vha44-RB | 241..1167 | 943..17 | 4585 | 99.7 | Minus |
CG8048-PD | 2145 | Vha44-RD | 1267..2145 | 895..17 | 4395 | 100 | Minus |
CG8048-PC | 1329 | Vha44-RC | 452..1329 | 894..17 | 4390 | 100 | Minus |
CG8048-PD | 2145 | Vha44-RD | 241..289 | 943..895 | 195 | 95.9 | Minus |
CG8048-PC | 1329 | Vha44-RC | 241..289 | 943..895 | 195 | 95.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 452..1378 | 943..17 | 4605 | 99.8 | Minus |
Vha44-RA | 1470 | CG8048-RA | 397..1323 | 943..17 | 4605 | 99.8 | Minus |
Vha44-RC | 2693 | CG8048-RC | 663..1540 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 352..608 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 16326974..16327160 | 708..894 | 935 | 100 | Plus |
2R | 25286936 | 2R | 16326135..16326275 | 116..256 | 705 | 100 | Plus |
2R | 25286936 | 2R | 16326810..16326909 | 608..707 | 500 | 100 | Plus |
2R | 25286936 | 2R | 16325966..16326064 | 17..115 | 495 | 100 | Plus |
2R | 25286936 | 2R | 16326333..16326430 | 255..352 | 490 | 100 | Plus |
2R | 25286936 | 2R | 16333034..16333082 | 895..943 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:03:30 has no hits.
BS04620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:14 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-PA | 241..1167 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:13 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8048-PB | 241..1167 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:55:43 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 397..1323 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:18 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 397..1323 | 17..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:18 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16325966..16326064 | 17..115 | 100 | <- | Plus |
2R | 16326135..16326273 | 116..254 | 100 | <- | Plus |
2R | 16326333..16326430 | 255..352 | 100 | <- | Plus |
2R | 16326493..16326748 | 353..608 | 100 | <- | Plus |
2R | 16326811..16326909 | 609..707 | 100 | <- | Plus |
2R | 16326974..16327160 | 708..894 | 100 | <- | Plus |
2R | 16333034..16333082 | 895..943 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:55:43 Download gff for
BS04620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12214316..12214414 | 609..707 | 100 | <- | Plus |
arm_2R | 12213471..12213569 | 17..115 | 100 | <- | Plus |
arm_2R | 12213640..12213778 | 116..254 | 100 | <- | Plus |
arm_2R | 12213838..12213935 | 255..352 | 100 | <- | Plus |
arm_2R | 12213998..12214253 | 353..608 | 100 | <- | Plus |
arm_2R | 12214479..12214665 | 708..894 | 100 | <- | Plus |
arm_2R | 12220539..12220587 | 895..943 | 95 | | Plus |
BS04620.5prime Sequence
954 bp (774 high quality bases) assembled on 2005-11-29
> BS04620.5prime
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTANCACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAGGGCGCTGCGCGTGTTTGTGGGATCCGTGCTGAGATACG
GACT
BS04620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8048-PA | 1167 | Vha44-RA | 1..938 | 17..954 | 4596 | 99.5 | Plus |
CG8048-PB | 1167 | Vha44-RB | 1..938 | 17..954 | 4596 | 99.5 | Plus |
CG8048-PD | 2145 | Vha44-RD | 1267..1916 | 305..954 | 3156 | 99.3 | Plus |
CG8048-PC | 1329 | Vha44-RC | 452..1100 | 306..954 | 3151 | 99.3 | Plus |
CG8048-PD | 2145 | Vha44-RD | 1..289 | 17..305 | 1445 | 100 | Plus |
CG8048-PC | 1329 | Vha44-RC | 1..289 | 17..305 | 1445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 212..1149 | 17..954 | 4634 | 99.6 | Plus |
Vha44-RA | 1470 | CG8048-RA | 157..1094 | 17..954 | 4634 | 99.6 | Plus |
Vha44-RC | 2693 | CG8048-RC | 663..1311 | 306..954 | 3189 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 848..592 | 1259 | 99.2 | Minus |
2R | 25286936 | 2R | 16326974..16327160 | 492..306 | 935 | 100 | Minus |
2R | 25286936 | 2R | 16333034..16333190 | 305..149 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16333276..16333412 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 16326810..16326909 | 592..493 | 500 | 100 | Minus |
2R | 25286936 | 2R | 16326333..16326430 | 945..848 | 460 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:48:49 has no hits.
BS04620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:15 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:14 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8048-PB | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:07 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 150..1094 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:29:30 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 150..1094 | 9..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:29:30 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16333034..16333187 | 152..305 | 100 | <- | Minus |
2R | 16333278..16333419 | 9..151 | 97 | | Minus |
2R | 16326330..16326430 | 848..948 | 97 | <- | Minus |
2R | 16326493..16326748 | 592..847 | 99 | <- | Minus |
2R | 16326811..16326909 | 493..591 | 100 | <- | Minus |
2R | 16326974..16327160 | 306..492 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:07 Download gff for
BS04620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12220539..12220692 | 152..305 | 100 | <- | Minus |
arm_2R | 12220783..12220924 | 9..151 | 97 | | Minus |
arm_2R | 12213835..12213935 | 848..948 | 97 | <- | Minus |
arm_2R | 12213998..12214253 | 592..847 | 99 | <- | Minus |
arm_2R | 12214316..12214414 | 493..591 | 100 | <- | Minus |
arm_2R | 12214479..12214665 | 306..492 | 100 | <- | Minus |
BS04620.complete Sequence
1199 bp (1199 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634979
> BS04620.complete
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTTTGTGGAATCCGTGCTGAGATACG
GACTGCCTGTTAACTTCCAGGCCATCTTGATCGAGCCCAACAAGAAGAGC
GTGAAGCGTCTGCGCGATGTGCTCAACCAGCTGTATGGTCACTTGGATGG
CGCCTCCGCCGGCGGTGCTGTCAGCAGTGCTGATAACGTAGACATCCCCG
GCCTGGGCTTTGGCCAGTCCGAATACTTCCCCTATGTGTTCTACAAGGTC
AACATCGATATGGTGGAGCAGGCCAAGGTCTAAAAGCTTTCTAGACCAT
BS04620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1167 | CG8048-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Vha44-RA | 1167 | CG8048-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Vha44-RC | 1329 | CG8048-PC | 452..1329 | 306..1183 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 212..1378 | 17..1183 | 5835 | 100 | Plus |
Vha44-RA | 1470 | CG8048-RA | 157..1323 | 17..1183 | 5835 | 100 | Plus |
Vha44-RC | 2693 | CG8048-RC | 663..1540 | 306..1183 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 848..592 | 1285 | 100 | Minus |
2R | 25286936 | 2R | 16326974..16327160 | 492..306 | 935 | 100 | Minus |
2R | 25286936 | 2R | 16333034..16333190 | 305..149 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16326135..16326275 | 1084..944 | 705 | 100 | Minus |
2R | 25286936 | 2R | 16333276..16333412 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 16326810..16326909 | 592..493 | 500 | 100 | Minus |
2R | 25286936 | 2R | 16325966..16326064 | 1183..1085 | 495 | 100 | Minus |
2R | 25286936 | 2R | 16326333..16326430 | 945..848 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:58 has no hits.
BS04620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:14 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 1..1167 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:28 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 196..1374 | 5..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:04 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 157..1321 | 17..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:14 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 196..1374 | 5..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:52 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 157..1321 | 17..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:52 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16325968..16326064 | 1085..1181 | 100 | <- | Minus |
2R | 16326135..16326273 | 946..1084 | 100 | <- | Minus |
2R | 16326333..16326430 | 848..945 | 100 | <- | Minus |
2R | 16326493..16326748 | 592..847 | 100 | <- | Minus |
2R | 16326811..16326909 | 493..591 | 100 | <- | Minus |
2R | 16326974..16327160 | 306..492 | 100 | <- | Minus |
2R | 16333034..16333187 | 152..305 | 100 | <- | Minus |
2R | 16333278..16333412 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:04 Download gff for
BS04620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12213838..12213935 | 848..945 | 100 | <- | Minus |
arm_2R | 12213640..12213778 | 946..1084 | 100 | <- | Minus |
arm_2R | 12213473..12213569 | 1085..1181 | 100 | <- | Minus |
arm_2R | 12213998..12214253 | 592..847 | 100 | <- | Minus |
arm_2R | 12214316..12214414 | 493..591 | 100 | <- | Minus |
arm_2R | 12214479..12214665 | 306..492 | 100 | <- | Minus |
arm_2R | 12220539..12220692 | 152..305 | 100 | <- | Minus |
arm_2R | 12220783..12220917 | 17..151 | 100 | | Minus |
BS04620.pep Sequence
Translation from 16 to 1182
> BS04620.pep
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKV*
BS04620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-PB | 388 | CG8048-PB | 1..388 | 1..388 | 2008 | 100 | Plus |
Vha44-PA | 388 | CG8048-PA | 1..388 | 1..388 | 2008 | 100 | Plus |
Vha44-PC | 442 | CG8048-PC | 1..442 | 1..388 | 1895 | 86.2 | Plus |
Vha44-PF | 836 | CG8048-PF | 546..836 | 98..388 | 1490 | 100 | Plus |
Vha44-PE | 836 | CG8048-PE | 546..836 | 98..388 | 1490 | 100 | Plus |
Vha44-PF | 836 | CG8048-PF | 1..100 | 1..100 | 516 | 97 | Plus |