Clone Sequence Records
BS04623.complete Sequence
2099 bp assembled on 2009-12-07
GenBank Submission: KX795442
> BS04623.complete
GAAGTTATCAGTCGACATGTGTCCTGCAGTGCTGAGCTTCAAAATCAACC
AAAAGCCTTATCCTCGTTTACTTAACTTCACAACTAATGAATACATTTTA
TGTTTGCAGACTGGGGAGCTGAACGAGTACACGGAACGTTCCGAGATGCC
AGCTGAGATTATGTGCATGGCTTTGGGAACTGTTCCGGAGGGCGAGCAGA
GATCCTGGTTCTTGGCCGTCGGCCTGGCGGATAATACAGTGCGCATCTTA
TCGCTGGATCCCAACAACTGTCTCACTCCCTGCTCCATGCAGGCCCTGCC
TTCGCCAGCCGAATCCCTTTGCCTGGTCGAAATGGGTCACACGGAGAGCA
CGACTCAGGGAGGTTTGGATGACGATGCTCCCGCTCAGCGCAGTGGCAAC
AATAAGGGAACCATTTACCTAAACATTGGATTGAGCAACGGTGTCCTGCT
GAGAACTGTGCTCGATCCTGTTTCCGGAGATTTGGCAGACACCCGAACGA
GATATTTGGGTTCCCGACCCGTAAAGCTCTTCCGGATCAAGATGCAGGGA
TCCGAAGCGGTGCTGGCCATGTCCAGTCGAACCTGGCTGTCGTACTACCA
CCAAAATCGATTCCATTTGACGCCTCTGTCTTATGAAACCCTTGAGTATG
CTTCTGGCTTCTCGAGCGAGCAGTGCAGCGAAGGTATCGTGGCTATATCC
ACCAACACCTTGAGGATCTTGGCCCTGGAGAAACTGGGAGCCGTCTTCAA
TCAAGTAGCGTTCCCCTTGCAGTACACTCCACGTACCTTTGTAATCCATC
CGGATACGGGACGCATGCTAATTGCCGAAACCGATCACAACGCCTACACA
GAGGATACGAAGAGTGCTCGAAAGGAGCAAATGGCGGAGGAGATGCGCAG
TGCAGCTGGCGATGAGGAGAGGGAGTTGGCCCGCGAAATGGCCAATGCTT
TCATCAACGAAGTCCTTCCCGAGGACGTGTTTTCGTCGCCCAAAGCAGGA
CTAGGTCTTTGGGCCTCGCAAATCCGTTGCCTGGACGCCATGCATGGTCA
GACGATGTTCAGTGTGCCGCTCACCCAAAACGAGGCCATTATGTCGATGG
CCATGCTGAAGTTCTCCATAGCGGCTGATGGCCGGTACTACCTGGCCGTG
GGAATCGCTAAGGATCTGCAGCTGAATCCTAGGATTTCGCAAGGCGGCTG
CATAGATATCTACAAAATAGATCCCACTTGCTCCAGTCTGGAATTCATGC
ACCGCACGGACATTGACGAGATTCCTGGAGCCCTGTGCGGCTTCCAGGGT
CGTCTACTAGCTGGCTGCGGTCGAATGTTGCGAATCTACGATTTCGGCAA
GAAGAAAATGCTGCGCAAATGCGAGAACAAGCACATTCCCTATCAGATTG
TCAATATCCAAGCCATGGGTCATCGTGTTTACGTGTCGGATGTTCAGGAA
TCAGTATTTTTCATACGCTATCGTCGCGCGGAGAACCAGCTGATTATATT
TGCCGATGACACGCATCCTCGTTGGGTGACGGCCACCACCTTGCTGGACT
ACGATACCATAGCCATCGCCGATAAGTTTGGCAACCTGAGCATTCAGCGA
TTGCCCCACTCCGTAACGGACGATGTGGACGAGGATCCAACGGGCACCAA
GTCTCTGTGGGATCGTGGCCTGCTGTCAGGTGCTTCGCAGAAGTCGGAGA
ACATTTGCTCCTTCCATGTGGGCGAGATAATCATGTCGCTGCAGAAGGCA
ACGCTAATTCCTGGAGGATCGGAAGCCCTTATATACGCCACGCTAAGTGG
CACTGTTGGAGCATTTGTTCCGTTCACCAGTCGCGAGGACTACGACTTCT
TCCAACATCTGGAGATGCACATGCGCAATGAGAATCCCCCACTCTGTGGA
CGCGACCATCTCAGCTACAGGAGCTCGTATTATCCGGTCAAAAACGTACT
CGACGGCGATCTCTGCGAGCAGTATCTGTCCATTGAGGCAGCCAAGCAGA
AGAGCATAGCTGGCGACATGTTCCGCACACCCAACCAGATCTGCAAGAAA
CTGGAGGATATTCGCACGCGATACGCCTTCTAAAAGCTTTCTAGACCAT
BS04623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RA | 3684 | CG13900-PA | 1710..3684 | 109..2083 | 9605 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RC | 4329 | CG13900-RC | 1978..3952 | 109..2083 | 9605 | 99.1 | Plus |
| CG13900-RA | 4222 | CG13900-RA | 1871..3845 | 109..2083 | 9605 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 827878..829944 | 2083..17 | 10050 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:05 has no hits.
BS04623.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:23 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RB | 34..2098 | 17..2081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:04 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 1880..3860 | 100..2081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:08 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RB | 34..2098 | 17..2081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:55 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 1863..3843 | 100..2081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:55 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 827880..829944 | 17..2081 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:04 Download gff for
BS04623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 827880..829944 | 17..2081 | 99 | | Minus |
BS04623.3prime Sequence
947 bp (797 high quality bases) assembled on 2005-12-02
> BS04623.3prime
ATGGTCTAGAAAGCTTTTAGAAGGCGTATCGCGTGCGAATATCCTCCAGT
TTCTTGCAGATCTGGTTGGGTGTGCGGAACATGTCGCCAGCTATGCTCTT
CTGCTTGGCTGCCTCAATGGACAGATACTGCTCGCAGAGATCGCCGTCGA
GTACGTTTTTGACCGGATAATACGAGCTCCTGTAGCTGAGATGGTCGCGT
CCACAGAGTGGGGGATTCTCATTGCGCATGTGCATCTCCAGATGTTGGAA
GAAGTCGTAGTCCTCGCGACTGGTGAACGGAACAAATGCTCCAACAGTGC
CACTTAGCGTGGCGTATATAAGGGCTTCCGATCCTCCAGGAATTAGCGTT
GCCTTCTGCAGCGACATGATTATCTCGCCCACATGGAAGGAGCAAATGTT
CTCCGACTTCTGCGAAGCACCTGACAGCAGGCCACGATCCCACAGAGACT
TGGTGCCCGTTGGATCCTCGTCCACATCGTCCGTTACGGAGTGGGGCAAT
CGCTGAATGCTCAGGTTGCCAAACTTATCGGCGATGGCTATGGTATCGTA
GTCCAGCAAGGTGGTGGCCGTCACCCAACGAGGATGCGTGTCATCGGCAA
ATATAATCAGCTGGTTCTCCGCGCGACGATAGCGTATGAAAAATACTGAT
TCCTGAACATCCGACACGTAAACACGATGACCCATGGCTTGGATATTGAC
AATCTGATAGGGAATGTGCTTGTTCTCGCATTTGCGCAGCATTTTCTTCT
TGCCGAAATCGTAGATTCGCAACATTCGACCGCAGCCAGCTAGTAGACGA
CCCTGGAAGCCGCACAGGGCTCCAGGAATCTCGTCAATGTCCGTGCGGTG
CATGAATTCCAGACTGGAGCAAGTGGGATCTATTTTGTAGATATCTATGC
AGCCGGCTTGCGAAATCCTAGGGATCAGCTGCAGATCCTTAGCGATT
BS04623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-PA | 3684 | CG13900-RA | 2754..3684 | 947..17 | 4330 | 98.6 | Minus |
| CG13900-PB | 2067 | CG13900-RB | 1137..2067 | 947..17 | 4330 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RC | 4329 | CG13900-RC | 3022..3952 | 947..17 | 4460 | 98.7 | Minus |
| CG13900-RA | 4222 | CG13900-RA | 2915..3845 | 947..17 | 4460 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 827878..828808 | 17..947 | 4460 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:25:34 has no hits.
BS04623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:16 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-PA | 2754..3684 | 17..947 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:15 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-PB | 1137..2067 | 17..947 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:00:30 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 2932..3862 | 17..947 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:24 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 2915..3845 | 17..947 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:24 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 827878..828808 | 17..947 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:00:30 Download gff for
BS04623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 827878..828808 | 17..947 | 98 | | Plus |
BS04623.5prime Sequence
939 bp (824 high quality bases) assembled on 2005-12-02
> BS04623.5prime
GAAGTTATCAGTCGACATGTGTCCTGCAGTGCTGAGCTTCAAAATCAACC
AAAAGCCTTATCCTCGTTTACTTAACTTCACAACTAATGAATACATTTTA
TGTTTGCAGACTGGGGAGCTGAACGAGTACACGGAACGTTCCGAGATGCC
AGCTGAGATTATGTGCATGGCTTTGGGAACTGTTCCGGAGGGCGAGCAGA
GATCCTGGTTCTTGGCCGTCGGCCTGGCGGATAATACAGTGCGCATCTTA
TCGCTGGATCCCAACAACTGTCTCACTCCCTGCTCCATGCAGGCCCTGCC
TTCGCCAGCCGAATCCCTTTGCCTGGTCGAAATGGGTCACACGGAGAGCA
CGACTCAGGGAGGTTTGGATGACGATGCTCCCGCTCAGCGCAGTGGCAAC
AATAAGGGAACCATTTACCTAAACATTGGATTGAGCAACGGTGTCCTGCT
GAGAACTGTGCTCGATCCTGTTTCCGGAGATTTGGCAGACACCCGAACGA
GATATTTGGGTTCCCGACCCGTAAAGCTCTTCCGGATCAAGATGCAGGGA
TCCGAAGCGGTGCTGGCCATGTCCAGTCGAACCTGGCTGTCGTACTACCA
CCAAAATCGATTCCATTTGACGCCTCTGTCTTATGAAACCCTTGAGTATG
CTTCTGGCTTCTCGAGCGAGCAGTGCAGCGAAGGTATCGTGGCTATATCC
ACCAACACCTTGAGGATCTTGGCCCTGGAGAAACTGGGAGCCGTCTTCAA
TCAAGTAGCGTTCCCCTTGCAGTACACTCCACGTACCTTTGTAATCCATC
CGGATACGGGACGCATGCTAATTGCCGAAACCGATCACAACGCCTACACA
GAGGATACGAAGAGTGCTCGAAAGGAGCAAATGGCGGAGGAGATGCGCAG
TGCAGCTGGCGATGAGGAGAGGGAGTTGGCCCGCGAAAA
BS04623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-PB | 2067 | CG13900-RB | 1..922 | 17..938 | 4460 | 99.3 | Plus |
| CG13900-PA | 3684 | CG13900-RA | 1710..2539 | 109..938 | 4025 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RC | 4329 | CG13900-RC | 1978..2807 | 109..938 | 4075 | 99.4 | Plus |
| CG13900-RA | 4222 | CG13900-RA | 1871..2700 | 109..938 | 4075 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 829023..829944 | 938..17 | 4520 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:59 has no hits.
BS04623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:17 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-PB | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:17 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-PB | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:37 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 1880..2714 | 100..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:24 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 1863..2697 | 100..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:24 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 829026..829951 | 10..935 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:37 Download gff for
BS04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 829026..829951 | 10..935 | 99 | | Minus |
BS04623.pep Sequence
Translation from 16 to 2082
> BS04623.pep
MCPAVLSFKINQKPYPRLLNFTTNEYILCLQTGELNEYTERSEMPAEIMC
MALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAES
LCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLD
PVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFH
LTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDE
ERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSV
PLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYK
IDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLR
KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTH
PRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDR
GLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAF
VPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLC
EQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF*
BS04623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-PA | 1227 | CG13900-PA | 549..1227 | 10..688 | 3425 | 97.3 | Plus |
| pic-PA | 1140 | CG7769-PA | 516..1118 | 26..673 | 274 | 19 | Plus |
