Clone BS04626 Report

Search the DGRC for BS04626

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptGalphao-RA
Protein status:BS04626.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04626.3prime Sequence

881 bp (860 high quality bases) assembled on 2005-12-02

> BS04626.3prime
ATGGTCTAGAAAGCTTTTAGTACAGTCCACAGCCGCGCAGGTTGTTTGCT
ATGATGACATCGGTGACAGCATCGAATACAAACTGAATGTTATTGGTATC
TGTGGCACACGTCATGTGGCAGTAGATTTCTTTTGAGGTTGATTTGTTTT
TCGCTTCAAATTGAGCCTGAATGTAAGCAGCCGCCTCGCCGTACTCCTGT
CCACCTGTGTATTCGGGGAAGCAAATCGTCAGGGGACTCTTGCGAATCTT
CTCCTCGAACAAATCCTTCTTGTTCAGGAATAGAATAATCGAGGTGTCCG
TGAACCATTTGTTGTTACAGATCGAGTCAAACAGTTTCAGCGACTCTTGC
ATGCGGTTCGTGGTTTCATCCTCATGCAAGACTTGATCGTACTCGGACAT
GGCCACGCAGAAAATGATCGCCGTGACATCTTCGAAGCAGTGTATCCATT
TCTTACGTTCCGAGCGCTGACCGCCCACGTCAAACAATTTAAAGTTGAGG
TTTTTGAAGGAGAAGTGTACCTCAACGATGCCAGTGGTCTTGACGCGAGT
GCGCAAGATATCTTGTTCAGTTGGCTGGTAATCCTTGGCGCCTAACCGAT
CCAAATCGTCCAGGAAATATTTTGCGGAATCGTTTAGTTGGTATTCGTTG
CTGCGCGAGAAGCACTCCTGGACACCGGCGTCCTGCCAGAGGCGTTTCAT
GGCGGCCAGCAGCTCCTCCGAGAAGGGCTCGGTGTCGTGCATGCGTTGGC
ATACGTCGAACACCATCTTGGCATCGCTCTCCCGCTCGTTATTGCTGTAC
TGAATACTTANGGTTGGCATCGCGCGCAATATTGCAACTAATGATTGTAT
TGTGTTGCTGTAGACAACCGGTCGATATTGT

BS04626.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2204-PB 1065 G-oalpha47A-RB 201..1065 881..17 4281 99.7 Minus
CG2204-PC 1065 G-oalpha47A-RC 201..1065 881..17 4281 99.7 Minus
CG2204-PA 1065 G-oalpha47A-RA 201..1065 881..17 4281 99.7 Minus
CG2204-PD 1065 G-oalpha47A-RD 201..1065 881..17 4281 99.7 Minus
CG2204-PE 1065 G-oalpha47A-RE 201..1065 881..17 4281 99.7 Minus
CG2204-PF 1065 G-oalpha47A-RF 201..1065 881..17 4281 99.7 Minus
CG2204-PG 1065 G-oalpha47A-RG 201..1065 881..17 4281 99.7 Minus
CG2204-PH 1065 G-oalpha47A-RH 201..1065 881..17 4281 99.7 Minus
CG2204-PI 1065 G-oalpha47A-RI 201..1065 881..17 4281 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Galphao-RI 5457 CG2204-RI 592..1456 881..17 4299 99.8 Minus
Galphao-RH 2194 CG2204-RH 344..1208 881..17 4299 99.8 Minus
Galphao-RG 2322 CG2204-RG 472..1336 881..17 4299 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10461510..10461700 207..17 955 100 Minus
2R 25286936 2R 10448470..10448632 780..618 815 100 Minus
2R 25286936 2R 10461289..10461446 359..202 790 100 Minus
2R 25286936 2R 10461096..10461225 488..359 650 100 Minus
2R 25286936 2R 10460903..10461031 617..489 645 100 Minus
2R 25286936 2R 10448281..10448383 881..779 489 98.1 Minus
3L 28110227 3L 6973588..6973731 203..346 225 77.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:38 has no hits.

BS04626.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:18 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2204-PF 201..1065 17..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:18 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2204-PI 201..1065 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:31 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphao-RG 472..1345 9..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphao-RG 472..1345 9..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10448472..10448632 618..778 100 -> Minus
2R 10460903..10461031 489..617 100 -> Minus
2R 10461096..10461225 359..488 100 -> Minus
2R 10461290..10461443 205..358 100 -> Minus
2R 10461513..10461709 9..204 97   Minus
2R 10448281..10448383 779..881 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:31 Download gff for BS04626.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6348795..6348948 205..358 100 -> Minus
arm_2R 6335786..6335888 779..881 98 -> Minus
arm_2R 6335977..6336137 618..778 100 -> Minus
arm_2R 6348408..6348536 489..617 100 -> Minus
arm_2R 6348601..6348730 359..488 100 -> Minus
arm_2R 6349018..6349214 9..204 97   Minus

BS04626.5prime Sequence

960 bp (758 high quality bases) assembled on 2005-12-02

> BS04626.5prime
GAAGTTATCAGTCGACATGGGCTGCGCACAGTCTGCCGAGGAGCGAGCCG
CAGCCGCCAGGAGTCGCCTCATCGAGCGCAATCTCAAGGAGGACGGCATA
CAGGCGGCAAAGGACATCAAACTCCTGCTGCTGGGTGCCGGTGAGTCGGG
CAAGAGCACAATAGTCAAACAGATGAAAATCATTCACGAGAGCGGCTTCA
CTGCTGAGGACTTTAAACAATATCGACCGGTTGTCTACAGCAACACAATA
CAATCATTAGTTGCAATATTGCGCGCGATGCCAACCCTAAGTATTCAGTA
CAGCAATAACGAGCGGGAGAGCGATGCCAAGATGGTGTTCGACGTATGCC
AACGCATGCACGACACCGAGCCCTTCTCGGAGGAGCTGCTGGCCGCCATG
AAACGCCTCTGGCAGGACGCCGGTGTCCAGGAGTGCTTCTCGCGCAGCAA
CGAATACCAACTAAACGATTCCGCAAAATATTTCCTGGACGATTTGGATC
GGTTAGGCGCCAAGGATTACCAGCCAACTGAACAAGATATCTTGCGCACT
CGCGTCAAGACCACTGGCATCGTTGAGGTACACTTCTCCTTCAAAAACCT
CAACTTTAAATTGTTTGACGTGGGCGGTCAGCGCTCGGAACGTAAGAAAT
GGATACACTGCTTCGAAGATGTCACGGCGATCATTTTCTGCGTGGCCATG
TCCGAGTACGATCAAGTCTTGCATGAGGATGAAACCACGAACCGCATGCA
AGAGTCGCTGAAACTGTTTGACTCGATCTGTAACAACAAATGGTTCACGG
ACACCTCGATTATTCTATTCCTGAACAAGAAGGATTTGTTCGAGGAGAAG
ATTCGCAAGAGTCCCCTGACGATTTGCTTCCCCGAATACACAGGTGGACA
GGAGTACGGCGAGGCGGCTGCTTACATTCAGGCTCAATTTGAAGCGAAAA
ACAAATCACC

BS04626.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2204-PC 1065 G-oalpha47A-RC 1..942 17..958 4660 99.7 Plus
CG2204-PA 1065 G-oalpha47A-RA 1..942 17..958 4660 99.7 Plus
CG2204-PI 1065 G-oalpha47A-RI 1..942 17..958 4660 99.7 Plus
CG2204-PB 1065 G-oalpha47A-RB 64..942 80..958 4195 99 Plus
CG2204-PD 1065 G-oalpha47A-RD 64..942 80..958 4195 99 Plus
CG2204-PE 1065 G-oalpha47A-RE 64..942 80..958 4195 99 Plus
CG2204-PF 1065 G-oalpha47A-RF 64..942 80..958 4195 99 Plus
CG2204-PG 1065 G-oalpha47A-RG 64..942 80..958 4195 99 Plus
CG2204-PH 1065 G-oalpha47A-RH 64..942 80..958 4195 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Galphao-RI 5457 CG2204-RI 391..1333 16..958 4685 99.8 Plus
Galphao-RA 3462 CG2204-RA 379..1321 16..958 4685 99.8 Plus
Galphao-RC 2367 CG2204-RC 316..1258 16..958 4685 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10448198..10448383 134..319 900 98.9 Plus
2R 25286936 2R 10448470..10448632 318..480 815 100 Plus
2R 25286936 2R 10461289..10461446 739..896 790 100 Plus
2R 25286936 2R 10461096..10461225 610..739 650 100 Plus
2R 25286936 2R 10460903..10461031 481..609 645 100 Plus
2R 25286936 2R 10445506..10445627 16..137 610 100 Plus
2R 25286936 2R 10461510..10461577 891..958 340 100 Plus
3L 28110227 3L 6973588..6973731 895..752 225 77.1 Minus
2R 25286936 2R 10439577..10439633 80..136 195 89.5 Plus
Blast to na_te.dros performed on 2015-02-13 09:01:05 has no hits.

BS04626.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:19 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2204-PI 1..944 17..960 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:20 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2204-PI 1..944 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:25:53 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphao-RC 316..1260 16..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:43:06 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphao-RC 316..1260 16..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:43:06 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10461290..10461443 740..893 100 -> Plus
2R 10461513..10461579 894..960 98   Plus
2R 10445506..10445624 16..134 100 -> Plus
2R 10448199..10448383 135..319 98 -> Plus
2R 10448472..10448632 320..480 100 -> Plus
2R 10460903..10461031 481..609 100 -> Plus
2R 10461096..10461225 610..739 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:25:53 Download gff for BS04626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6335977..6336137 320..480 100 -> Plus
arm_2R 6348408..6348536 481..609 100 -> Plus
arm_2R 6348601..6348730 610..739 100 -> Plus
arm_2R 6348795..6348948 740..893 100 -> Plus
arm_2R 6349018..6349084 894..960 98   Plus
arm_2R 6333011..6333129 16..134 100 -> Plus
arm_2R 6335704..6335888 135..319 98 -> Plus

BS04626.complete Sequence

1097 bp (1097 high quality bases) assembled on 2006-02-02

GenBank Submission: MN238599

> BS04626.complete
GAAGTTATCAGTCGACATGGGCTGCGCACAGTCTGCCGAGGAGCGAGCCG
CAGCCGCCAGGAGTCGCCTCATCGAGCGCAATCTCAAGGAGGACGGCATA
CAGGCGGCAAAGGACATCAAACTCCTGCTGCTGGGTGCCGGTGAGTCGGG
CAAGAGCACAATAGTCAAACAGATGAAAATCATTCACGAGAGCGGCTTCA
CTGCTGAGGACTTTAAACAATATCGACCGGTTGTCTACAGCAACACAATA
CAATCATTAGTTGCAATATTGCGCGCGATGCCAACCCTAAGTATTCAGTA
CAGCAATAACGAGCGGGAGAGCGATGCCAAGATGGTGTTCGACGTATGCC
AACGCATGCACGACACCGAGCCCTTCTCGGAGGAGCTGCTGGCCGCCATG
AAACGCCTCTGGCAGGACGCCGGTGTCCAGGAGTGCTTCTCGCGCAGCAA
CGAATACCAACTAAACGATTCCGCAAAATATTTCCTGGACGATTTGGATC
GGTTAGGCGCCAAGGATTACCAGCCAACTGAACAAGATATCTTGCGCACT
CGCGTCAAGACCACTGGCATCGTTGAGGTACACTTCTCCTTCAAAAACCT
CAACTTTAAATTGTTTGACGTGGGCGGTCAGCGCTCGGAACGTAAGAAAT
GGATACACTGCTTCGAAGATGTCACGGCGATCATTTTCTGCGTGGCCATG
TCCGAGTACGATCAAGTCTTGCATGAGGATGAAACCACGAACCGCATGCA
AGAGTCGCTGAAACTGTTTGACTCGATCTGTAACAACAAATGGTTCACGG
ACACCTCGATTATTCTATTCCTGAACAAGAAGGATTTGTTCGAGGAGAAG
ATTCGCAAGAGTCCCCTGACGATTTGCTTCCCCGAATACACAGGTGGACA
GGAGTACGGCGAGGCGGCTGCTTACATTCAGGCTCAATTTGAAGCGAAAA
ACAAATCAACCTCAAAAGAAATCTACTGCCACATGACGTGTGCCACAGAT
ACCAATAACATTCAGTTTGTATTCGATGCTGTCACCGATGTCATCATAGC
AAACAACCTGCGCGGCTGTGGACTGTACTAAAAGCTTTCTAGACCAT

BS04626.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Galphao-RI 1065 CG2204-PI 1..1065 17..1081 5295 99.8 Plus
Galphao-RA 1065 CG2204-PA 1..1065 17..1081 5295 99.8 Plus
Galphao-RC 1065 CG2204-PC 1..1065 17..1081 5295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Galphao-RI 5457 CG2204-RI 391..1456 16..1081 5300 99.8 Plus
Galphao-RA 3462 CG2204-RA 379..1444 16..1081 5300 99.8 Plus
Galphao-RC 2367 CG2204-RC 316..1381 16..1081 5300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10461510..10461700 891..1081 955 100 Plus
2R 25286936 2R 10448198..10448383 134..319 900 98.9 Plus
2R 25286936 2R 10448470..10448632 318..480 815 100 Plus
2R 25286936 2R 10461289..10461446 739..896 790 100 Plus
2R 25286936 2R 10461096..10461225 610..739 650 100 Plus
2R 25286936 2R 10460903..10461031 481..609 645 100 Plus
2R 25286936 2R 10445506..10445627 16..137 610 100 Plus
3L 28110227 3L 6973588..6973731 895..752 225 77.1 Minus
2R 25286936 2R 10439577..10439633 80..136 195 89.5 Plus
Blast to na_te.dros performed on 2014-11-27 15:08:29 has no hits.

BS04626.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:54 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
G-oalpha47A-RI 1..1065 17..1081 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:46 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
G-oalpha47A-RI 111..1173 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:38 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
Galphao-RC 317..1379 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:54 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
G-oalpha47A-RI 110..1184 16..1089 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:46 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
Galphao-RC 317..1379 17..1079 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:46 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10461096..10461225 610..739 100 -> Plus
2R 10461290..10461443 740..893 100 -> Plus
2R 10461513..10461698 894..1079 100   Plus
2R 10448199..10448383 135..319 98 -> Plus
2R 10445507..10445624 17..134 100 -> Plus
2R 10448472..10448632 320..480 100 -> Plus
2R 10460903..10461031 481..609 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:38 Download gff for BS04626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6333012..6333129 17..134 100 -> Plus
arm_2R 6335704..6335888 135..319 98 -> Plus
arm_2R 6335977..6336137 320..480 100 -> Plus
arm_2R 6348408..6348536 481..609 100 -> Plus
arm_2R 6348601..6348730 610..739 100 -> Plus
arm_2R 6348795..6348948 740..893 100 -> Plus
arm_2R 6349018..6349203 894..1079 100   Plus

BS04626.pep Sequence

Translation from 16 to 1080

> BS04626.pep
MGCAQSAEERAAAARSRLIERNLKEDGIQAAKDIKLLLLGAGESGKSTIV
KQMKIIHESGFTAEDFKQYRPVVYSNTIQSLVAILRAMPTLSIQYSNNER
ESDAKMVFDVCQRMHDTEPFSEELLAAMKRLWQDAGVQECFSRSNEYQLN
DSAKYFLDDLDRLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLF
DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL
FDSICNNKWFTDTSIILFLNKKDLFEEKIRKSPLTICFPEYTGGQEYGEA
AAYIQAQFEAKNKSTSKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG
CGLY*

BS04626.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Galphao-PI 354 CG2204-PI 1..354 1..354 1838 100 Plus
Galphao-PA 354 CG2204-PA 1..354 1..354 1838 100 Plus
Galphao-PC 354 CG2204-PC 1..354 1..354 1838 100 Plus
Galphao-PH 354 CG2204-PH 1..354 1..354 1806 98 Plus
Galphao-PG 354 CG2204-PG 1..354 1..354 1806 98 Plus