Clone Sequence Records
BS04627.3prime Sequence
931 bp (831 high quality bases) assembled on 2005-12-02
> BS04627.3prime
ATGGTCTAGAAAGCTTTTAAGATATAGTACAGTCGCAGCACATCAGTGAG
TAGTACAAGCATTTAACGACTTTCTCATCGTTGTCATCGTACTCCTTGCG
ATTCAATTTGGCCTTGTCATTGTCATAGCCTAACGATTTGGCATCCAACT
GGTCGGCGGCCAGGCCCTCCACCTTTTTGGACATCTTTCGCTTATTCGCA
TGTATCAGTTCGTTGGTGTTTCGCTGTCCCACCATTTCGTCGATCCAATC
GAAGTCTGTGGCGTTTCCCTGAAACCTGGTTAAACTGGAAATGGTTTCGA
TCGAATTGATATCCTCCTGATTGTTGTTGTGGTTCTTATATCTACTTTTC
TGTGGCGTTGTTTGCTGGGAATGTGATGCGGGCGGCGACGAGCCCGGCTT
ATGATTAGCCAGTGGCGAAGAATCGGTTGCTATCGATGCTGTGGTTCCCG
CAGAGCTATTTAGCACCACATCGGTGTCCTGTGCTGCTGGAAAACTTGGC
ACCTTCGGCAAATCCTCGGGGCTTACAAAGTTGTGCAAGTCCTGTATTAC
AACGGTGGTGATCACGCTGGGCGAAGTCATGGCTCGCGTGGATGCGGTTG
CAGTCTCGGAAGTAGGACTATACGGGATCGGTGAGTTCGGGCTCACAGGC
GTAGTCGGCAGTGTGGCAGTCTCCGAAACGATGGCCAAGTCCTCAGAGGA
TGCTCTATCGCTGTTTGCGCATCCTTGAACCAGCGAACAGGTGGCCACAA
TGCTCAGCGACGATGATGGTGAGTTGGCAGACAAATCGGTGGAGGGAAAA
TCAATCAGCTCGGCCTGAGCCTTGCTGCCGCCCAAGGACCATACTTCGCT
CTTTTTCTGTGGACCCGAGTACGAGATATGCTTGTTGGTGGCATTAAAAC
GACCCTTGGAATGGGACTTTCGGCCCGGTAT
BS04627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-PA | 969 | CG9992-RA | 55..969 | 931..17 | 4575 | 100 | Minus |
CG9992-PD | 969 | CG9992-RD | 55..969 | 931..17 | 4575 | 100 | Minus |
CG9992-PE | 969 | CG9992-RE | 55..969 | 931..17 | 4575 | 100 | Minus |
CG9992-PC | 969 | CG9992-RC | 55..969 | 931..17 | 4575 | 100 | Minus |
CG9992-PB | 564 | CG9992-RB | 1..564 | 580..17 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 1340 | CG9992-RC | 122..1037 | 931..16 | 4580 | 100 | Minus |
CG9992-RE | 1380 | CG9992-RE | 162..1077 | 931..16 | 4580 | 100 | Minus |
CG9992-RD | 1608 | CG9992-RD | 390..1305 | 931..16 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16382257..16382565 | 16..324 | 1530 | 99.7 | Plus |
X | 23542271 | X | 16382906..16383167 | 536..797 | 1310 | 100 | Plus |
X | 23542271 | X | 16382624..16382844 | 316..536 | 1105 | 100 | Plus |
X | 23542271 | X | 16383324..16383457 | 798..931 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:09:10 has no hits.
BS04627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:20 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PD | 55..969 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:22 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PC | 55..969 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:12 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 390..1305 | 16..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:03 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 390..1305 | 16..931 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:03 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16382257..16382557 | 16..316 | 100 | <- | Plus |
X | 16382625..16382843 | 317..535 | 100 | <- | Plus |
X | 16382906..16383167 | 536..797 | 100 | <- | Plus |
X | 16383324..16383457 | 798..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:12 Download gff for
BS04627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16276290..16276590 | 16..316 | 100 | <- | Plus |
arm_X | 16276658..16276876 | 317..535 | 100 | <- | Plus |
arm_X | 16276939..16277200 | 536..797 | 100 | <- | Plus |
arm_X | 16277357..16277490 | 798..931 | 100 | | Plus |
BS04627.5prime Sequence
862 bp (832 high quality bases) assembled on 2005-11-29
> BS04627.5prime
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCC
BS04627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-PA | 969 | CG9992-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9992-PD | 969 | CG9992-RD | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9992-PE | 969 | CG9992-RE | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9992-PC | 969 | CG9992-RC | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9992-PB | 564 | CG9992-RB | 1..441 | 422..862 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 1340 | CG9992-RC | 68..913 | 17..862 | 4230 | 100 | Plus |
CG9992-RE | 1380 | CG9992-RE | 108..953 | 17..862 | 4230 | 100 | Plus |
CG9992-RD | 1608 | CG9992-RD | 336..1181 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16382906..16383167 | 466..205 | 1310 | 100 | Minus |
X | 23542271 | X | 16382624..16382844 | 686..466 | 1105 | 100 | Minus |
X | 23542271 | X | 16383324..16383511 | 204..17 | 940 | 100 | Minus |
X | 23542271 | X | 16382381..16382565 | 862..678 | 910 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:49:57 has no hits.
BS04627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:21 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PD | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:23 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PC | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:39 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 332..1181 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:21 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 332..1181 | 12..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:21 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16382906..16383167 | 205..466 | 100 | <- | Minus |
X | 16383324..16383515 | 12..204 | 98 | | Minus |
X | 16382381..16382557 | 686..862 | 100 | <- | Minus |
X | 16382625..16382843 | 467..685 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:39 Download gff for
BS04627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16276414..16276590 | 686..862 | 100 | <- | Minus |
arm_X | 16276658..16276876 | 467..685 | 100 | <- | Minus |
arm_X | 16276939..16277200 | 205..466 | 100 | <- | Minus |
arm_X | 16277357..16277548 | 12..204 | 98 | | Minus |
BS04627.complete Sequence
1001 bp (1001 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634980
> BS04627.complete
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCCAAATCGTTAGGCTATGACAATGACAAGGCCAAATTGAA
TCGCAAGGAGTACGATGACAACGATGAGAAAGTCGTTAAATGCTTGTACT
ACTCACTGATGTGCTGCGACTGTACTATATCTTAAAAGCTTTCTAGACCA
T
BS04627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 969 | CG9992-PC | 1..969 | 17..985 | 4845 | 100 | Plus |
CG9992-RE | 969 | CG9992-PE | 1..969 | 17..985 | 4845 | 100 | Plus |
CG9992-RD | 969 | CG9992-PD | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 1340 | CG9992-RC | 68..1037 | 17..986 | 4850 | 100 | Plus |
CG9992-RE | 1380 | CG9992-RE | 108..1077 | 17..986 | 4850 | 100 | Plus |
CG9992-RD | 1608 | CG9992-RD | 336..1305 | 17..986 | 4850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16382257..16382565 | 986..678 | 1530 | 99.7 | Minus |
X | 23542271 | X | 16382906..16383167 | 466..205 | 1310 | 100 | Minus |
X | 23542271 | X | 16382624..16382844 | 686..466 | 1105 | 100 | Minus |
X | 23542271 | X | 16383324..16383511 | 204..17 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:52 has no hits.
BS04627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:55 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RE | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:08 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RE | 108..1077 | 17..986 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:06 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 336..1302 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:56 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RE | 108..1077 | 17..986 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:35 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 336..1302 | 17..983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:35 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16382260..16382557 | 686..983 | 100 | <- | Minus |
X | 16382625..16382843 | 467..685 | 100 | <- | Minus |
X | 16382906..16383167 | 205..466 | 100 | <- | Minus |
X | 16383324..16383511 | 17..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:06 Download gff for
BS04627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16276293..16276590 | 686..983 | 100 | <- | Minus |
arm_X | 16276658..16276876 | 467..685 | 100 | <- | Minus |
arm_X | 16276939..16277200 | 205..466 | 100 | <- | Minus |
arm_X | 16277357..16277544 | 17..204 | 100 | | Minus |
BS04627.pep Sequence
Translation from 16 to 984
> BS04627.pep
MASNSTKKSKPSGMRILWIPGRKSHSKGRFNATNKHISYSGPQKKSEVWS
LGGSKAQAELIDFPSTDLSANSPSSSLSIVATCSLVQGCANSDRASSEDL
AIVSETATLPTTPVSPNSPIPYSPTSETATASTRAMTSPSVITTVVIQDL
HNFVSPEDLPKVPSFPAAQDTDVVLNSSAGTTASIATDSSPLANHKPGSS
PPASHSQQTTPQKSRYKNHNNNQEDINSIETISSLTRFQGNATDFDWIDE
MVGQRNTNELIHANKRKMSKKVEGLAADQLDAKSLGYDNDKAKLNRKEYD
DNDEKVVKCLYYSLMCCDCTIS*
BS04627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-PC | 322 | CG9992-PC | 1..322 | 1..322 | 1663 | 100 | Plus |
CG9992-PE | 322 | CG9992-PE | 1..322 | 1..322 | 1663 | 100 | Plus |
CG9992-PD | 322 | CG9992-PD | 1..322 | 1..322 | 1663 | 100 | Plus |
CG9992-PA | 322 | CG9992-PA | 1..322 | 1..322 | 1663 | 100 | Plus |
CG9992-PB | 187 | CG9992-PB | 1..187 | 136..322 | 978 | 100 | Plus |