Clone BS04627 Report

Search the DGRC for BS04627

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG9992-RA
Protein status:BS04627.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04627.3prime Sequence

931 bp (831 high quality bases) assembled on 2005-12-02

> BS04627.3prime
ATGGTCTAGAAAGCTTTTAAGATATAGTACAGTCGCAGCACATCAGTGAG
TAGTACAAGCATTTAACGACTTTCTCATCGTTGTCATCGTACTCCTTGCG
ATTCAATTTGGCCTTGTCATTGTCATAGCCTAACGATTTGGCATCCAACT
GGTCGGCGGCCAGGCCCTCCACCTTTTTGGACATCTTTCGCTTATTCGCA
TGTATCAGTTCGTTGGTGTTTCGCTGTCCCACCATTTCGTCGATCCAATC
GAAGTCTGTGGCGTTTCCCTGAAACCTGGTTAAACTGGAAATGGTTTCGA
TCGAATTGATATCCTCCTGATTGTTGTTGTGGTTCTTATATCTACTTTTC
TGTGGCGTTGTTTGCTGGGAATGTGATGCGGGCGGCGACGAGCCCGGCTT
ATGATTAGCCAGTGGCGAAGAATCGGTTGCTATCGATGCTGTGGTTCCCG
CAGAGCTATTTAGCACCACATCGGTGTCCTGTGCTGCTGGAAAACTTGGC
ACCTTCGGCAAATCCTCGGGGCTTACAAAGTTGTGCAAGTCCTGTATTAC
AACGGTGGTGATCACGCTGGGCGAAGTCATGGCTCGCGTGGATGCGGTTG
CAGTCTCGGAAGTAGGACTATACGGGATCGGTGAGTTCGGGCTCACAGGC
GTAGTCGGCAGTGTGGCAGTCTCCGAAACGATGGCCAAGTCCTCAGAGGA
TGCTCTATCGCTGTTTGCGCATCCTTGAACCAGCGAACAGGTGGCCACAA
TGCTCAGCGACGATGATGGTGAGTTGGCAGACAAATCGGTGGAGGGAAAA
TCAATCAGCTCGGCCTGAGCCTTGCTGCCGCCCAAGGACCATACTTCGCT
CTTTTTCTGTGGACCCGAGTACGAGATATGCTTGTTGGTGGCATTAAAAC
GACCCTTGGAATGGGACTTTCGGCCCGGTAT

BS04627.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PA 969 CG9992-RA 55..969 931..17 4575 100 Minus
CG9992-PD 969 CG9992-RD 55..969 931..17 4575 100 Minus
CG9992-PE 969 CG9992-RE 55..969 931..17 4575 100 Minus
CG9992-PC 969 CG9992-RC 55..969 931..17 4575 100 Minus
CG9992-PB 564 CG9992-RB 1..564 580..17 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 1340 CG9992-RC 122..1037 931..16 4580 100 Minus
CG9992-RE 1380 CG9992-RE 162..1077 931..16 4580 100 Minus
CG9992-RD 1608 CG9992-RD 390..1305 931..16 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16382257..16382565 16..324 1530 99.7 Plus
X 23542271 X 16382906..16383167 536..797 1310 100 Plus
X 23542271 X 16382624..16382844 316..536 1105 100 Plus
X 23542271 X 16383324..16383457 798..931 670 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:09:10 has no hits.

BS04627.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:20 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PD 55..969 17..931 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:22 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PC 55..969 17..931 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:12 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 390..1305 16..931 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:03 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 390..1305 16..931 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:03 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16382257..16382557 16..316 100 <- Plus
X 16382625..16382843 317..535 100 <- Plus
X 16382906..16383167 536..797 100 <- Plus
X 16383324..16383457 798..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:12 Download gff for BS04627.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276290..16276590 16..316 100 <- Plus
arm_X 16276658..16276876 317..535 100 <- Plus
arm_X 16276939..16277200 536..797 100 <- Plus
arm_X 16277357..16277490 798..931 100   Plus

BS04627.5prime Sequence

862 bp (832 high quality bases) assembled on 2005-11-29

> BS04627.5prime
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCC

BS04627.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PA 969 CG9992-RA 1..846 17..862 4230 100 Plus
CG9992-PD 969 CG9992-RD 1..846 17..862 4230 100 Plus
CG9992-PE 969 CG9992-RE 1..846 17..862 4230 100 Plus
CG9992-PC 969 CG9992-RC 1..846 17..862 4230 100 Plus
CG9992-PB 564 CG9992-RB 1..441 422..862 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 1340 CG9992-RC 68..913 17..862 4230 100 Plus
CG9992-RE 1380 CG9992-RE 108..953 17..862 4230 100 Plus
CG9992-RD 1608 CG9992-RD 336..1181 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16382906..16383167 466..205 1310 100 Minus
X 23542271 X 16382624..16382844 686..466 1105 100 Minus
X 23542271 X 16383324..16383511 204..17 940 100 Minus
X 23542271 X 16382381..16382565 862..678 910 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:49:57 has no hits.

BS04627.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:21 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PD 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:23 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PC 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:27:39 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 332..1181 12..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:21 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 332..1181 12..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:21 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16382906..16383167 205..466 100 <- Minus
X 16383324..16383515 12..204 98   Minus
X 16382381..16382557 686..862 100 <- Minus
X 16382625..16382843 467..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:27:39 Download gff for BS04627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276414..16276590 686..862 100 <- Minus
arm_X 16276658..16276876 467..685 100 <- Minus
arm_X 16276939..16277200 205..466 100 <- Minus
arm_X 16277357..16277548 12..204 98   Minus

BS04627.complete Sequence

1001 bp (1001 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634980

> BS04627.complete
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCCAAATCGTTAGGCTATGACAATGACAAGGCCAAATTGAA
TCGCAAGGAGTACGATGACAACGATGAGAAAGTCGTTAAATGCTTGTACT
ACTCACTGATGTGCTGCGACTGTACTATATCTTAAAAGCTTTCTAGACCA
T

BS04627.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 969 CG9992-PC 1..969 17..985 4845 100 Plus
CG9992-RE 969 CG9992-PE 1..969 17..985 4845 100 Plus
CG9992-RD 969 CG9992-PD 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 1340 CG9992-RC 68..1037 17..986 4850 100 Plus
CG9992-RE 1380 CG9992-RE 108..1077 17..986 4850 100 Plus
CG9992-RD 1608 CG9992-RD 336..1305 17..986 4850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16382257..16382565 986..678 1530 99.7 Minus
X 23542271 X 16382906..16383167 466..205 1310 100 Minus
X 23542271 X 16382624..16382844 686..466 1105 100 Minus
X 23542271 X 16383324..16383511 204..17 940 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:31:52 has no hits.

BS04627.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:55 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:08 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 108..1077 17..986 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:06 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 336..1302 17..983 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:56 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 108..1077 17..986 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:35 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 336..1302 17..983 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:35 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
X 16382260..16382557 686..983 100 <- Minus
X 16382625..16382843 467..685 100 <- Minus
X 16382906..16383167 205..466 100 <- Minus
X 16383324..16383511 17..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:06 Download gff for BS04627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276293..16276590 686..983 100 <- Minus
arm_X 16276658..16276876 467..685 100 <- Minus
arm_X 16276939..16277200 205..466 100 <- Minus
arm_X 16277357..16277544 17..204 100   Minus

BS04627.pep Sequence

Translation from 16 to 984

> BS04627.pep
MASNSTKKSKPSGMRILWIPGRKSHSKGRFNATNKHISYSGPQKKSEVWS
LGGSKAQAELIDFPSTDLSANSPSSSLSIVATCSLVQGCANSDRASSEDL
AIVSETATLPTTPVSPNSPIPYSPTSETATASTRAMTSPSVITTVVIQDL
HNFVSPEDLPKVPSFPAAQDTDVVLNSSAGTTASIATDSSPLANHKPGSS
PPASHSQQTTPQKSRYKNHNNNQEDINSIETISSLTRFQGNATDFDWIDE
MVGQRNTNELIHANKRKMSKKVEGLAADQLDAKSLGYDNDKAKLNRKEYD
DNDEKVVKCLYYSLMCCDCTIS*

BS04627.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PC 322 CG9992-PC 1..322 1..322 1663 100 Plus
CG9992-PE 322 CG9992-PE 1..322 1..322 1663 100 Plus
CG9992-PD 322 CG9992-PD 1..322 1..322 1663 100 Plus
CG9992-PA 322 CG9992-PA 1..322 1..322 1663 100 Plus
CG9992-PB 187 CG9992-PB 1..187 136..322 978 100 Plus