Clone BS04629 Report

Search the DGRC for BS04629

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:29
Vector:pDNR-Dual
Associated Gene/TranscripteIF5-RA
Protein status:BS04629.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04629.3prime Sequence

966 bp (850 high quality bases) assembled on 2005-12-02

> BS04629.3prime
ATGGTCTAGAAAGCTTTTAGATATCGTCGATGTTCACGTCGTCCTCGTCA
TCCTCGTCGCCTGCAACAGCGCGTGGAATTCCGCGTTGGACGACCCGTTG
ACCGCCACGTTGGCCGGCACTGGAAACGTAGTTATCCTCCTCGGATTCAT
CGTCCTCCTCCTCCTCACTTTCGGAGGACTCTTCCTCGGCATTCTTCAGC
CAGAGAACGAATGGCATAGCTTTCTCGTGTATTTCGGCAGCAATATTTTT
CGAGACATGTCGTTTGCTAACCTTCTGTGCCCACTCCAGTATGACGGCCT
CATCGAGTATGTCCAGATCATAAAACAATTTGAAGATTCCAGCAACCTTG
CTCATCAATATACCCTTATGCAGCTCTACAGTTTGCTCCACTCCACCAAT
TAGATAGCGCTGTGCTTTTGGATTATTGAGGGTGAAGCGAAGAAGCAAAG
GGCGATTCTTCTGCACGTCCTTGATGATGTTTTCAGTGAAAAGCAGCTCG
GCGAGAACCAATGGAGCCTTGTTAATAATATCCAAGCGTTCGGCTTCAAT
CACCAGCTCCTTGTGAGTTTGCACATCATCCAATTGCTTCTTGTCCCGCT
TGTCCTTAACCAACTCGTAGAAAATATCAATGCGCTCCTTTTCAGTTTTA
TCATAGTCATCCGAAATAGTCATACCCTTAGCACCATCAGTCAGATCTTG
CAAACGAGCACGAATAGCCTCCTTCGAAACATCGACACTCCATCCCTCAT
CGTCGTCATCCTTGGCTGTTTTCTCCGGAATAGCTGCGCTAATCTCGGCC
TCAGTTTGGCTAGCCTGATTTGTGCCGTTGCCGCCATCTGATTCACCGCC
AGAGTTGTTGGCCAAAGAGTTATTGGTCATGGAGCCATCGGCGTTATCGT
TCTTCTGCTTCTGTTTCCTCGAGCGTTTGCCCTCGGTTAGCGATGATCCT
TGGGGCGGCCGGGATC

BS04629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9177-PD 1395 eIF5-RD 458..1395 954..17 4690 100 Minus
CG9177-PC 1395 eIF5-RC 458..1395 954..17 4690 100 Minus
CG9177-PA 1395 eIF5-RA 458..1395 954..17 4690 100 Minus
CG9177-PE 1395 eIF5-RE 458..1395 954..17 4690 100 Minus
CG9177-PB 1395 eIF5-RB 458..1395 954..17 4690 100 Minus
CG9177-PG 1395 eIF5-RG 458..1395 954..17 4690 100 Minus
CG9177-PF 1395 eIF5-RF 458..1395 954..17 4690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-RF 2383 CG9177-RF 1320..2267 962..14 4720 99.9 Minus
eIF5-RG 2521 CG9177-RG 1458..2405 962..14 4720 99.9 Minus
eIF5-RB 2588 CG9177-RB 1525..2472 962..14 4720 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15987282..15987991 14..723 3550 100 Plus
X 23542271 X 15988067..15988300 721..954 1170 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:54:23 has no hits.

BS04629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:24 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-PE 447..1395 17..966 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:27 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9177-PF 447..1395 17..966 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:03 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1521..2477 9..966 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:26 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1521..2477 9..966 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:26 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15987277..15987989 9..721 99 <- Plus
X 15988068..15988309 722..966 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:03 Download gff for BS04629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15882101..15882342 722..966 98   Plus
arm_X 15881310..15882022 9..721 99 <- Plus

BS04629.5prime Sequence

935 bp (783 high quality bases) assembled on 2005-11-29

> BS04629.5prime
GAAGTTATCAGTCGACATGGCCACCGTAAACGTAAACCGCAGTGTGACGG
ACATCTTCTATCGCTACAAGATGCCACGTCTGCAGGCAAAGGTCGAGGGC
AAAGGAAACGGCATTAAGACCGTGCTGGTCAACATGGCGGAAGTGGCTAG
GGCCATCGGACGCCCGGCCACCTATCCAACCAAGTACTTTGGTTGCGAGC
TGGGCGCCCAGACGCTGTTCGATCACAAGAATGAGCGCTTTGTTGTGAAT
GGATCGCATGATGTGAACAAGTTGCAGGATTTGTTGGATGGTTTTATTCG
CAAGTTTGTGTTATGCCCCGAGTGCGACAATCCGGAGACCAATTTAACTG
TGTCGGCCAAAAACCAGACCATTTCGCAGTCTTGCAAGGCATGCGGCTTC
CATGGTCTGCTCAAGGTTAACCATAAAGTGAACACATTCATTGTGAAGAA
CCCCCCGTCATTGAATCCGGCCGCCCAAGGATCATCGCTAACCGAGGGCA
AACGCTCGAGGAAACAGAAGCAGAAGAACGATAACGCCGATGGCTCCATG
ACCAATAACTCTTTGGCCAACAACTCTGGCGGTGAATCAGATGGCGGCAA
CGGCACAAATCAGGCTAGCCAAACTGAGGCCGAGATTAGCGCAGCTATTC
CGGAGAAAACAGCCAAGGATGACGACGATGAGGGATGGAGTGTCGATGTT
TCGAAGGAGGCTATTCGTGCTCGTTTGCAAGATCTGACTGATGGTGCTAA
GGGTATGACTATTTCGGATGACTATGATAAAACTGAAAAGGAGCGCATTG
ATATTTTCTACGAGTTGGTTAAGGACAAGCGGGACAAGAAGCAATTGGAT
GATGTGCAAACTCACAAGGAGCTGGTGATTGAAGCCGAACGCTTGGATAT
TATTAACAAGGCTCCATTTGGTCTCGCCGAGCTGC

BS04629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9177-PD 1395 eIF5-RD 1..919 17..935 4545 99.7 Plus
CG9177-PC 1395 eIF5-RC 1..919 17..935 4545 99.7 Plus
CG9177-PA 1395 eIF5-RA 1..919 17..935 4545 99.7 Plus
CG9177-PE 1395 eIF5-RE 1..919 17..935 4545 99.7 Plus
CG9177-PB 1395 eIF5-RB 1..919 17..935 4545 99.7 Plus
CG9177-PG 1395 eIF5-RG 1..919 17..935 4545 99.7 Plus
CG9177-PF 1395 eIF5-RF 1..919 17..935 4545 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-RF 2383 CG9177-RF 870..1788 17..935 4565 99.8 Plus
eIF5-RG 2521 CG9177-RG 1008..1926 17..935 4565 99.8 Plus
eIF5-RB 2588 CG9177-RB 1075..1993 17..935 4565 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15988067..15988546 707..228 2400 100 Minus
X 23542271 X 15987761..15987991 935..705 1125 99.1 Minus
X 23542271 X 15988617..15988829 229..17 1065 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:30 has no hits.

BS04629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:25 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-PE 1..919 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:29 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9177-PF 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:07 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1070..1993 12..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:17 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1070..1993 12..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:17 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15987761..15987989 707..935 99 <- Minus
X 15988068..15988544 230..706 100 <- Minus
X 15988617..15988834 12..229 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:07 Download gff for BS04629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15881794..15882022 707..935 99 <- Minus
arm_X 15882101..15882577 230..706 100 <- Minus
arm_X 15882650..15882867 12..229 99   Minus

BS04629.complete Sequence

1427 bp (1427 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634981

> BS04629.complete
GAAGTTATCAGTCGACATGGCCACCGTAAACGTAAACCGCAGTGTGACGG
ACATCTTCTATCGCTACAAGATGCCACGTCTGCAGGCAAAGGTCGAGGGC
AAAGGAAACGGCATTAAGACCGTGCTGGTCAACATGGCGGAAGTGGCTAG
GGCCATCGGACGCCCGGCCACCTATCCAACCAAGTACTTTGGTTGCGAGC
TGGGCGCCCAGACGCTGTTCGATCACAAGAATGAGCGCTTTGTTGTGAAT
GGATCGCATGATGTGAACAAGTTGCAGGATTTGTTGGATGGTTTTATTCG
CAAGTTTGTGTTATGCCCCGAGTGCGACAATCCGGAGACCAATTTAACTG
TGTCGGCCAAAAACCAGACCATTTCGCAGTCTTGCAAGGCATGCGGCTTC
CATGGTCTGCTCAAGGTTAACCATAAAGTGAACACATTCATTGTGAAGAA
CCCCCCGTCATTGAATCCGGCCGCCCAAGGATCATCGCTAACCGAGGGCA
AACGCTCGAGGAAACAGAAGCAGAAGAACGATAACGCCGATGGCTCCATG
ACCAATAACTCTTTGGCCAACAACTCTGGCGGTGAATCAGATGGCGGCAA
CGGCACAAATCAGGCTAGCCAAACTGAGGCCGAGATTAGCGCAGCTATTC
CGGAGAAAACAGCCAAGGATGACGACGATGAGGGATGGAGTGTCGATGTT
TCGAAGGAGGCTATTCGTGCTCGTTTGCAAGATCTGACTGATGGTGCTAA
GGGTATGACTATTTCGGATGACTATGATAAAACTGAAAAGGAGCGCATTG
ATATTTTCTACGAGTTGGTTAAGGACAAGCGGGACAAGAAGCAATTGGAT
GATGTGCAAACTCACAAGGAGCTGGTGATTGAAGCCGAACGCTTGGATAT
TATTAACAAGGCTCCATTGGTTCTCGCCGAGCTGCTTTTCACTGAAAACA
TCATCAAGGACGTGCAGAAGAATCGCCCTTTGCTTCTTCGCTTCACCCTC
AATAATCCAAAAGCACAGCGCTATCTAATTGGTGGAGTGGAGCAAACTGT
AGAGCTGCATAAGGGTATATTGATGAGCAAGGTTGCTGGAATCTTCAAAT
TGTTTTATGATCTGGACATACTCGATGAGGCCGTCATACTGGAGTGGGCA
CAGAAGGTTAGCAAACGACATGTCTCGAAAAATATTGCTGCCGAAATACA
CGAGAAAGCTATGCCATTCGTTCTCTGGCTGAAGAATGCCGAGGAAGAGT
CCTCCGAAAGTGAGGAGGAGGAGGACGATGAATCCGAGGAGGATAACTAC
GTTTCCAGTGCCGGCCAACGTGGCGGTCAACGGGTCGTCCAACGCGGAAT
TCCACGCGCTGTTGCAGGCGACGAGGATGACGAGGACGACGTGAACATCG
ACGATATCTAAAAGCTTTCTAGACCAT

BS04629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-RF 1395 CG9177-PF 1..1395 17..1411 6975 100 Plus
eIF5-RG 1395 CG9177-PG 1..1395 17..1411 6975 100 Plus
eIF5-RB 1395 CG9177-PB 1..1395 17..1411 6975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-RF 2383 CG9177-RF 870..2267 17..1414 6990 100 Plus
eIF5-RG 2521 CG9177-RG 1008..2405 17..1414 6990 100 Plus
eIF5-RB 2588 CG9177-RB 1075..2472 17..1414 6990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15987282..15987991 1414..705 3550 100 Minus
X 23542271 X 15988067..15988546 707..228 2400 100 Minus
X 23542271 X 15988617..15988829 229..17 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:08:08 has no hits.

BS04629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:57 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1..1395 17..1411 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:10 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1015..2422 12..1419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:08 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1075..2467 17..1409 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:57 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1015..2422 12..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:31 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1075..2467 17..1409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:31 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
X 15987287..15987989 707..1409 100 <- Minus
X 15988068..15988544 230..706 100 <- Minus
X 15988617..15988829 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:08 Download gff for BS04629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15881320..15882022 707..1409 100 <- Minus
arm_X 15882101..15882577 230..706 100 <- Minus
arm_X 15882650..15882862 17..229 100   Minus

BS04629.pep Sequence

Translation from 16 to 1410

> BS04629.pep
MATVNVNRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRP
ATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLC
PECDNPETNLTVSAKNQTISQSCKACGFHGLLKVNHKVNTFIVKNPPSLN
PAAQGSSLTEGKRSRKQKQKNDNADGSMTNNSLANNSGGESDGGNGTNQA
SQTEAEISAAIPEKTAKDDDDEGWSVDVSKEAIRARLQDLTDGAKGMTIS
DDYDKTEKERIDIFYELVKDKRDKKQLDDVQTHKELVIEAERLDIINKAP
LVLAELLFTENIIKDVQKNRPLLLRFTLNNPKAQRYLIGGVEQTVELHKG
ILMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMP
FVLWLKNAEEESSESEEEEDDESEEDNYVSSAGQRGGQRVVQRGIPRAVA
GDEDDEDDVNIDDI*

BS04629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-PF 464 CG9177-PF 1..464 1..464 2382 100 Plus
eIF5-PG 464 CG9177-PG 1..464 1..464 2382 100 Plus
eIF5-PB 464 CG9177-PB 1..464 1..464 2382 100 Plus
eIF5-PE 464 CG9177-PE 1..464 1..464 2382 100 Plus
eIF5-PA 464 CG9177-PA 1..464 1..464 2382 100 Plus