Clone Sequence Records
BS04632.3prime Sequence
932 bp (830 high quality bases) assembled on 2005-12-02
> BS04632.3prime
ATGGTCTAGAAAGCTTCTAATCGCCCAGCGCCGGCACCTTGAATATCTTG
GCCGTGTTGTCCTCGGATACCGTTAGCAATAGATTTTCCTGAGGCTTGTA
GACAAACTCGTAGATGTGATAGTAGTGTCCCGTCAGAGTGAATTTCAGAA
TTCCTGTGCGTGCGTCGAATGCGTTCAGATTTCCCTGCGAGGTGGCCGCA
AGTATCGTGTGGTCGTTCAACCATTTGATCCTTATGACAGCATCATTGGG
AACTGGATTTTCGCATATGGTACGCAACGCTGATTTGGCATAGTCCCAGA
TGGATATCCTGCCGTCCAGCGAGCCACAGGCAAAGAGCTTTAGATCCGCC
GAGGAGGGAGCAAAGGCCAGACACTCAATACCGTGTTCCGACTGGATTGT
GCTAACCGGACCGTTGTTAGTGCAGAACAGCATTTTTCCGGACGCCTCAG
CGCAGACGTAGAAGGGCGATTCCCTTTCGCAGGCCACCACCGCGTGCGTG
ATCTCGCCGAAACCCATTGGATGCGATTCGTTTACGTCAATGAGCACCTG
ACAGCTCTTGAGATCCCACAGCTTTACGGATCCGTTCACGTAGGCCGTGA
ACAGCTTTTTGCCATCCCCACTGAGCTCTCCGGACTCGCAACGCGAAGAT
TGTCCCGGCAGGATTTTGCATTCACCGCTGGGTATGCGGAAAACGAAGAC
CTCTCCGCTGTCACTACCCGCCAGCAGGATGTGGGCAGCTCGATGCCAGA
AGAGCCAGGACATGTCGCTCATGGAGTACTCCCAGATTTTAGTCAGGATC
GGACGTTCGTCGTGCTTTTCACTGACCTTGAAGACAAACAGATCGCCGGC
TAGATCACCGGTGGCCAAATAGACGCCGTCGTGACTGAAATGCGTTTCCG
TGACGGTGTCCTTGTGCTCCGTGATCTCGTAG
BS04632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 363..1278 | 932..17 | 4530 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 463..1378 | 932..17 | 4550 | 99.8 | Minus |
CG5114-RB | 1500 | CG5114-RB | 463..957 | 932..438 | 2475 | 100 | Minus |
CG5114-RB | 1500 | CG5114-RB | 1017..1438 | 438..17 | 2080 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14983297..14983791 | 932..438 | 2475 | 100 | Minus |
3L | 28110227 | 3L | 14984209..14984424 | 232..17 | 1065 | 99.5 | Minus |
3L | 28110227 | 3L | 14983912..14984121 | 439..230 | 1035 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:32:25 has no hits.
BS04632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:27 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 363..1278 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:32 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 363..1278 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:06:01 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 463..1388 | 7..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:02 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 463..1388 | 7..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:02 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14983297..14983790 | 439..932 | 100 | -> | Minus |
3L | 14983913..14984120 | 231..438 | 99 | -> | Minus |
3L | 14984211..14984434 | 7..230 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:06:01 Download gff for
BS04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976397..14976890 | 439..932 | 100 | -> | Minus |
arm_3L | 14977013..14977220 | 231..438 | 99 | -> | Minus |
arm_3L | 14977311..14977534 | 7..230 | 97 | | Minus |
BS04632.5prime Sequence
890 bp (792 high quality bases) assembled on 2005-11-29
> BS04632.5prime
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGGTCTGCA
BS04632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 1..874 | 17..890 | 4320 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 101..974 | 17..890 | 4340 | 99.8 | Plus |
CG5114-RB | 1500 | CG5114-RB | 101..957 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14982935..14983791 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:26:08 has no hits.
BS04632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:28 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:34 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:22 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 95..973 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:56 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 95..973 | 7..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:56 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14982929..14983799 | 7..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:22 Download gff for
BS04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976029..14976899 | 7..882 | 98 | | Plus |
BS04632.complete Sequence
1310 bp (1310 high quality bases) assembled on 2006-02-02
> BS04632.complete
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGTTCTGCACTAACAACGG
TCCGGTTAGCACAATCCAGTCGGAACACGGTATTGAGTGTCTGGCCTTTG
CTCCCTCCTCGGCGGATCTAAAGCTCTTTGCCTGTGGCTCGCTGGACGGC
AGGATATCCATCTGGGACTATGCCAAATCAGCGTTGCGTACCATATGCGA
AAATCCAGTTCCCAATGATGCTGTCATAAGGATCAAATGGTTGAACGACC
ACACGATACTTGCGGCCACCTCGCAGGGAAATCTGAACGCATTCGACGCA
CGCACAGGAATTCTGAAATTCACTCTGACGGGACACTACTATCACATCTA
CGAGTTTGTCTACAAGCCTCAGGAAAATCTATTGCTAACGGTATCCGAGG
ACAACACGGCCAAGATATTCAAGGTGCCGGCGCTGGGCGATTAGAAGCTT
TCTAGACCAT
BS04632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1278 | CG5114-PA | 1..1278 | 17..1294 | 6345 | 99.8 | Plus |
CG5114-RB | 1338 | CG5114-PB | 1..857 | 17..873 | 4270 | 99.9 | Plus |
CG5114-RB | 1338 | CG5114-PB | 917..1338 | 873..1294 | 2080 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 101..1378 | 17..1294 | 6345 | 99.8 | Plus |
CG5114-RB | 1500 | CG5114-RB | 101..957 | 17..873 | 4270 | 99.9 | Plus |
CG5114-RB | 1500 | CG5114-RB | 1017..1438 | 873..1294 | 2080 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14982935..14983791 | 17..873 | 4270 | 99.9 | Plus |
3L | 28110227 | 3L | 14984209..14984424 | 1079..1294 | 1065 | 99.5 | Plus |
3L | 28110227 | 3L | 14983912..14984121 | 872..1081 | 1035 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:26 has no hits.
BS04632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:59 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 1..1278 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:11 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 82..1375 | 7..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:12 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 101..1378 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:59 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 82..1375 | 7..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:10 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 101..1378 | 17..1294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:10 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14982935..14983790 | 17..872 | 99 | -> | Plus |
3L | 14983913..14984120 | 873..1080 | 99 | -> | Plus |
3L | 14984211..14984424 | 1081..1294 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:12 Download gff for
BS04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976035..14976890 | 17..872 | 99 | -> | Plus |
arm_3L | 14977013..14977220 | 873..1080 | 99 | -> | Plus |
arm_3L | 14977311..14977524 | 1081..1294 | 99 | | Plus |
BS04632.pep Sequence
Translation from 16 to 1293
> BS04632.pep
MRDNTPPHRPDFDDGDDELQEIIELEEQPLDEDDDDLEEVTLEQLEARLA
MAGGDDDEEEDEEELRDRERIAAITDEATVTFKKHTAPVFACSLHPNYNW
AVTGSEDDRAFVWETSTGDVLYEITEHKDTVTETHFSHDGVYLATGDLAG
DLFVFKVSEKHDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEVF
VFRIPSGECKILPGQSSRCESGELSGDGKKLFTAYVNGSVKLWDLKSCQV
LIDVNESHPMGFGEITHAVVACERESPFYVCAEASGKMLFCTNNGPVSTI
QSEHGIECLAFAPSSADLKLFACGSLDGRISIWDYAKSALRTICENPVPN
DAVIRIKWLNDHTILAATSQGNLNAFDARTGILKFTLTGHYYHIYEFVYK
PQENLLLTVSEDNTAKIFKVPALGD*
BS04632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 425 | CG5114-PA | 1..425 | 1..425 | 2265 | 100 | Plus |
CG5114-PB | 445 | CG5114-PB | 1..445 | 1..425 | 2234 | 95.5 | Plus |