Clone BS04634 Report

Search the DGRC for BS04634

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptRbp1-RD
Protein status:BS04634.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04634.3prime Sequence

465 bp (464 high quality bases) assembled on 2005-12-02

> BS04634.3prime
ATGGTCTAGAAAGCTTTTAGAGTTGCAAGTTGAAGGTTGCTGGCTGTGGC
TGTGAAGATGGTTGCTGTTGTAGATTGTTGATGTTGTAGAAGGAAGAAGT
AGCAGTGGAAGTAGTTCTAGCCGAAGGAGTTATCCTGTAGCGTCCGGAAC
CAGAGCGACCACTACTGCCGCCTTCTCCGCGCCGGCGATCGCGCGAGCGA
CCCGAAGACATCTCTACGCGAATCCTGGTGCCGCAGCAGCGTGTTCCGTC
CAGGGCACGCGTTGCGTCTTCCGCGTCACGGCGATCCTCAAATTCGACAA
AGGCGAAACCTGGTGGATTGCGGGCCACCCACACGTTTCGCAGGGGTCCA
TATTTGGCAAATGCGCCTTCTATCTCGTGCTTGGACGCCGAGGAGCCCAG
GTTTCCCACGTACACCTTGCAGGCCAAGTCCCACTCCCTATATCGCGGCA
TGTCGACTGATAACT

BS04634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17136-PD 435 Rbp1-RD 1..435 451..17 2150 99.7 Minus
CG17136-PA 408 Rbp1-RA 1..318 451..134 1565 99.6 Minus
CG17136-PB 321 Rbp1-RB 1..318 451..134 1565 99.6 Minus
CG17136-PC 408 Rbp1-RC 1..318 451..134 1565 99.6 Minus
CG1987-PA 477 Rbp1-like-RA 96..170 356..282 150 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..584 451..16 2165 99.8 Minus
Rbp1-RA 773 CG17136-RA 149..466 451..134 1575 99.7 Minus
Rbp1-like-RC 1456 CG1987-RC 208..434 433..207 475 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 451..134 1575 99.7 Minus
3R 32079331 3R 10785400..10785521 137..16 610 100 Minus
X 23542271 X 13384444..13384670 207..433 475 80.6 Plus
Blast to na_te.dros performed on 2015-02-01 09:11:32 has no hits.

BS04634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:30 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-PD 1..435 17..451 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:36 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17136-PD 1..435 17..451 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:36 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 11..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:22 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 11..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:22 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 135..451 99 -> Minus
3R 10785403..10785523 11..134 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:36 Download gff for BS04634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 135..451 99 -> Minus
arm_3R 6611125..6611245 11..134 97   Minus

BS04634.5prime Sequence

465 bp (464 high quality bases) assembled on 2005-11-29

> BS04634.5prime
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCTA
AAAGCTTTCTAGACC

BS04634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17136-PD 435 Rbp1-RD 1..435 17..451 2150 99.7 Plus
CG17136-PA 408 Rbp1-RA 1..318 17..334 1565 99.6 Plus
CG17136-PB 321 Rbp1-RB 1..318 17..334 1565 99.6 Plus
CG17136-PC 408 Rbp1-RC 1..318 17..334 1565 99.6 Plus
CG1987-PA 477 Rbp1-like-RA 96..170 112..186 150 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..584 17..452 2165 99.8 Plus
Rbp1-RA 773 CG17136-RA 149..466 17..334 1575 99.7 Plus
Rbp1-like-RC 1456 CG1987-RC 208..434 35..261 475 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 17..334 1575 99.7 Plus
3R 32079331 3R 10785400..10785521 331..452 610 100 Plus
X 23542271 X 13384444..13384670 261..35 475 80.6 Minus
Blast to na_te.dros performed on 2015-02-11 11:57:19 has no hits.

BS04634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:31 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-PD 1..435 17..451 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:37 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17136-PD 1..435 17..451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:49 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 17..457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:34 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 17..457 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:34 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 17..333 99 -> Plus
3R 10785403..10785523 334..457 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:49 Download gff for BS04634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 17..333 99 -> Plus
arm_3R 6611125..6611245 334..457 97   Plus

BS04634.complete Sequence

467 bp (467 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634982

> BS04634.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCTA
AAAGCTTTCTAGACCAT

BS04634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 435 CG17136-PD 1..435 17..451 2160 99.8 Plus
Rbp1-RA 408 CG17136-PA 1..318 17..334 1575 99.7 Plus
Rbp1-like-RC 477 CG1987-PC 19..245 35..261 475 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..584 17..452 2165 99.8 Plus
Rbp1-RA 773 CG17136-RA 149..466 17..334 1575 99.7 Plus
Rbp1-like-RC 1456 CG1987-RC 208..434 35..261 475 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 17..334 1575 99.7 Plus
3R 32079331 3R 10785400..10785521 331..452 610 100 Plus
X 23542271 X 13384444..13384670 261..35 475 80.6 Minus
Blast to na_te.dros performed on 2014-11-27 08:09:42 has no hits.

BS04634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:51 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 1..435 17..451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:57 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 133..570 17..457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:59 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..581 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:51 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 133..570 17..457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:13 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..581 17..449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:13 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 17..333 99 -> Plus
3R 10785403..10785518 334..449 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:59 Download gff for BS04634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6611125..6611240 334..449 100   Plus
arm_3R 6610329..6610645 17..333 99 -> Plus

BS04634.pep Sequence

Translation from 16 to 450

> BS04634.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRITPSARTTSTATSSFYNINNLQQQPSSQPQPATFNLQL*

BS04634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-PD 144 CG17136-PD 1..144 1..144 761 100 Plus
Rbp1-PA 135 CG17136-PA 1..121 1..121 580 90.9 Plus
Rbp1-like-PB 247 CG1987-PB 1..142 1..118 490 69 Plus
Rbp1-like-PC 158 CG1987-PC 1..101 1..101 479 88.1 Plus
Rbp1-like-PA 158 CG1987-PA 1..101 1..101 479 88.1 Plus