Clone Sequence Records
BS04634.3prime Sequence
465 bp (464 high quality bases) assembled on 2005-12-02
> BS04634.3prime
ATGGTCTAGAAAGCTTTTAGAGTTGCAAGTTGAAGGTTGCTGGCTGTGGC
TGTGAAGATGGTTGCTGTTGTAGATTGTTGATGTTGTAGAAGGAAGAAGT
AGCAGTGGAAGTAGTTCTAGCCGAAGGAGTTATCCTGTAGCGTCCGGAAC
CAGAGCGACCACTACTGCCGCCTTCTCCGCGCCGGCGATCGCGCGAGCGA
CCCGAAGACATCTCTACGCGAATCCTGGTGCCGCAGCAGCGTGTTCCGTC
CAGGGCACGCGTTGCGTCTTCCGCGTCACGGCGATCCTCAAATTCGACAA
AGGCGAAACCTGGTGGATTGCGGGCCACCCACACGTTTCGCAGGGGTCCA
TATTTGGCAAATGCGCCTTCTATCTCGTGCTTGGACGCCGAGGAGCCCAG
GTTTCCCACGTACACCTTGCAGGCCAAGTCCCACTCCCTATATCGCGGCA
TGTCGACTGATAACT
BS04634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17136-PD | 435 | Rbp1-RD | 1..435 | 451..17 | 2150 | 99.7 | Minus |
CG17136-PA | 408 | Rbp1-RA | 1..318 | 451..134 | 1565 | 99.6 | Minus |
CG17136-PB | 321 | Rbp1-RB | 1..318 | 451..134 | 1565 | 99.6 | Minus |
CG17136-PC | 408 | Rbp1-RC | 1..318 | 451..134 | 1565 | 99.6 | Minus |
CG1987-PA | 477 | Rbp1-like-RA | 96..170 | 356..282 | 150 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..584 | 451..16 | 2165 | 99.8 | Minus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 451..134 | 1575 | 99.7 | Minus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 433..207 | 475 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 451..134 | 1575 | 99.7 | Minus |
3R | 32079331 | 3R | 10785400..10785521 | 137..16 | 610 | 100 | Minus |
X | 23542271 | X | 13384444..13384670 | 207..433 | 475 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:11:32 has no hits.
BS04634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:30 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-PD | 1..435 | 17..451 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:36 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17136-PD | 1..435 | 17..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:36 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 11..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:22 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 11..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:22 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 135..451 | 99 | -> | Minus |
3R | 10785403..10785523 | 11..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:36 Download gff for
BS04634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 135..451 | 99 | -> | Minus |
arm_3R | 6611125..6611245 | 11..134 | 97 | | Minus |
BS04634.5prime Sequence
465 bp (464 high quality bases) assembled on 2005-11-29
> BS04634.5prime
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCTA
AAAGCTTTCTAGACC
BS04634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17136-PD | 435 | Rbp1-RD | 1..435 | 17..451 | 2150 | 99.7 | Plus |
CG17136-PA | 408 | Rbp1-RA | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG17136-PB | 321 | Rbp1-RB | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG17136-PC | 408 | Rbp1-RC | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG1987-PA | 477 | Rbp1-like-RA | 96..170 | 112..186 | 150 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..584 | 17..452 | 2165 | 99.8 | Plus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 35..261 | 475 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 17..334 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 10785400..10785521 | 331..452 | 610 | 100 | Plus |
X | 23542271 | X | 13384444..13384670 | 261..35 | 475 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:57:19 has no hits.
BS04634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:31 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-PD | 1..435 | 17..451 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:37 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17136-PD | 1..435 | 17..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:49 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:34 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 17..457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:34 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 17..333 | 99 | -> | Plus |
3R | 10785403..10785523 | 334..457 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:49 Download gff for
BS04634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 17..333 | 99 | -> | Plus |
arm_3R | 6611125..6611245 | 334..457 | 97 | | Plus |
BS04634.complete Sequence
467 bp (467 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634982
> BS04634.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCTA
AAAGCTTTCTAGACCAT
BS04634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 435 | CG17136-PD | 1..435 | 17..451 | 2160 | 99.8 | Plus |
Rbp1-RA | 408 | CG17136-PA | 1..318 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 477 | CG1987-PC | 19..245 | 35..261 | 475 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..584 | 17..452 | 2165 | 99.8 | Plus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 35..261 | 475 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 17..334 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 10785400..10785521 | 331..452 | 610 | 100 | Plus |
X | 23542271 | X | 13384444..13384670 | 261..35 | 475 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:42 has no hits.
BS04634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:51 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 1..435 | 17..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:57 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 133..570 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:59 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..581 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:51 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 133..570 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:13 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..581 | 17..449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:13 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 17..333 | 99 | -> | Plus |
3R | 10785403..10785518 | 334..449 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:59 Download gff for
BS04634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6611125..6611240 | 334..449 | 100 | | Plus |
arm_3R | 6610329..6610645 | 17..333 | 99 | -> | Plus |
BS04634.pep Sequence
Translation from 16 to 450
> BS04634.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRITPSARTTSTATSSFYNINNLQQQPSSQPQPATFNLQL*
BS04634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-PD | 144 | CG17136-PD | 1..144 | 1..144 | 761 | 100 | Plus |
Rbp1-PA | 135 | CG17136-PA | 1..121 | 1..121 | 580 | 90.9 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 1..142 | 1..118 | 490 | 69 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 1..101 | 1..101 | 479 | 88.1 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 1..101 | 1..101 | 479 | 88.1 | Plus |