Clone BS04635 Report

Search the DGRC for BS04635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG7974-RA
Protein status:BS04635.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04635.3prime Sequence

915 bp (828 high quality bases) assembled on 2005-12-02

> BS04635.3prime
ATGGTCTAGAAAGCTTTTAGTATCTGCGGAACTGCTTCCTAAACTTATCA
TAATGGTAGTCATCTGTGGCTCGCTTGACTCCATTGGGATTCGTCTGATG
CTGTGCGGATTTGTTGCCCTCCCTTTCCTCACGCTTGCGCCTCCTTTGAT
CGCTGTTGTCCTCGATGTTGAATCGATTGTGTTGCATGAAGTTCACCGCC
ATGTTGGTGGGCACGAATTGCGAGGGTCCGTCCTTCTTGTTCTTGGCGTC
CTGCAGCAGCTTCTGCTTGGCTTCCTCGGTGGCCTCTATGTTGCGGATCT
TGGCCACAATGCCCAGGTCCACTTCAGGAATGCCATTGAGCATCTGGTTG
GACAACATCTCCTCCGATCTGTGCGAGGAAGACTGCCTCAGGTGGTCGGG
CAGGGCGTACAGGGCGGCATCCTCGGGGGTCAGGTACTTGTTTACATCAC
CGTCGTCCTCTGCTGCGTCCTCCGTGCCGCCTCCCTTGCGCTTCTGCAGC
TCCTGCTCGATGTACTTCATCATCTCCTCGTCCTCATCCCGCTTATTCGT
CTCCGCCGAGAACTGCGTGCCAATGCCCACGTCGTAGGCGTCGTCCGCCT
CCTTCATCTTGCCCGATTTCAGCTGCTTCATGTTGACCAGACCACCGGTC
TTCACATTAAAGGGATCCTTGATGGCCAGCTCCTCTTCTGGCGCGATCTT
CTTGCCCAGCGCCAGTCCCACAAGGCTGACGCCATTGGGTCGCTGCCTGA
GGCGCTGGCGTTCTTTAATCTCATCTAGCGTTAATTGTTCCTCCTTTTCT
TCTTCGTCTGAATTCTTGCGTTGCCTTAGGTTTTTTCGACCGGCTTTTTT
GAACAACACTTTGGTGGTGGCTTCTGCTTTTTGTTCCTCTGCATCGCTCA
TGTCGACTGATAACT

BS04635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PA 885 CG7974-RA 1..885 901..17 4375 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 113..999 902..16 4405 99.8 Minus
CG7974-RA 1137 CG7974-RA 113..999 902..16 4405 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 785..172 3070 100 Minus
3L 28110227 3L 1666090..1666245 171..16 780 100 Minus
3L 28110227 3L 1665250..1665366 902..786 555 98.3 Minus
Blast to na_te.dros performed on 2015-02-01 09:11:21 has no hits.

BS04635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:32 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..885 17..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:38 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..885 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:33 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..999 16..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:21 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..999 16..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:21 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1666090..1666245 16..171 100   Minus
3L 1665250..1665366 786..902 98 -> Minus
3L 1665421..1666034 172..785 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:33 Download gff for BS04635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665250..1665366 786..902 98 -> Minus
arm_3L 1665421..1666034 172..785 100 -> Minus
arm_3L 1666090..1666245 16..171 100   Minus

BS04635.5prime Sequence

915 bp (829 high quality bases) assembled on 2005-11-29

> BS04635.5prime
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACTA
AAAGCTTTCTAGACC

BS04635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PA 885 CG7974-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 113..999 16..902 4435 100 Plus
CG7974-RA 1137 CG7974-RA 113..999 16..902 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 133..746 3070 100 Plus
3L 28110227 3L 1666090..1666245 747..902 780 100 Plus
3L 28110227 3L 1665250..1665366 16..132 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:32:51 has no hits.

BS04635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:33 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:40 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:40 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..999 16..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:51 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 113..999 16..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:51 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1665250..1665366 16..132 100 -> Plus
3L 1665421..1666034 133..746 100 -> Plus
3L 1666090..1666245 747..902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:40 Download gff for BS04635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665250..1665366 16..132 100 -> Plus
arm_3L 1665421..1666034 133..746 100 -> Plus
arm_3L 1666090..1666245 747..902 100   Plus

BS04635.complete Sequence

917 bp (917 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634983

> BS04635.complete
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACTA
AAAGCTTTCTAGACCAT

BS04635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 885 CG7974-PB 1..885 17..901 4425 100 Plus
CG7974-RA 885 CG7974-PA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RB 1348 CG7974-RB 113..999 16..902 4435 100 Plus
CG7974-RA 1137 CG7974-RA 113..999 16..902 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 133..746 3070 100 Plus
3L 28110227 3L 1666090..1666245 747..902 780 100 Plus
3L 28110227 3L 1665250..1665366 16..132 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:36:38 has no hits.

BS04635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:19 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:58 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 108..994 16..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:01 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 114..996 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:19 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 108..994 16..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:49 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 114..996 17..899 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:49 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665251..1665366 17..132 100 -> Plus
3L 1665421..1666034 133..746 100 -> Plus
3L 1666090..1666242 747..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:01 Download gff for BS04635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665251..1665366 17..132 100 -> Plus
arm_3L 1665421..1666034 133..746 100 -> Plus
arm_3L 1666090..1666242 747..899 100   Plus

BS04635.pep Sequence

Translation from 16 to 900

> BS04635.pep
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRY*

BS04635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PB 294 CG7974-PB 1..294 1..294 1507 100 Plus
CG7974-PA 294 CG7974-PA 1..294 1..294 1507 100 Plus