Clone Sequence Records
BS04635.3prime Sequence
915 bp (828 high quality bases) assembled on 2005-12-02
> BS04635.3prime
ATGGTCTAGAAAGCTTTTAGTATCTGCGGAACTGCTTCCTAAACTTATCA
TAATGGTAGTCATCTGTGGCTCGCTTGACTCCATTGGGATTCGTCTGATG
CTGTGCGGATTTGTTGCCCTCCCTTTCCTCACGCTTGCGCCTCCTTTGAT
CGCTGTTGTCCTCGATGTTGAATCGATTGTGTTGCATGAAGTTCACCGCC
ATGTTGGTGGGCACGAATTGCGAGGGTCCGTCCTTCTTGTTCTTGGCGTC
CTGCAGCAGCTTCTGCTTGGCTTCCTCGGTGGCCTCTATGTTGCGGATCT
TGGCCACAATGCCCAGGTCCACTTCAGGAATGCCATTGAGCATCTGGTTG
GACAACATCTCCTCCGATCTGTGCGAGGAAGACTGCCTCAGGTGGTCGGG
CAGGGCGTACAGGGCGGCATCCTCGGGGGTCAGGTACTTGTTTACATCAC
CGTCGTCCTCTGCTGCGTCCTCCGTGCCGCCTCCCTTGCGCTTCTGCAGC
TCCTGCTCGATGTACTTCATCATCTCCTCGTCCTCATCCCGCTTATTCGT
CTCCGCCGAGAACTGCGTGCCAATGCCCACGTCGTAGGCGTCGTCCGCCT
CCTTCATCTTGCCCGATTTCAGCTGCTTCATGTTGACCAGACCACCGGTC
TTCACATTAAAGGGATCCTTGATGGCCAGCTCCTCTTCTGGCGCGATCTT
CTTGCCCAGCGCCAGTCCCACAAGGCTGACGCCATTGGGTCGCTGCCTGA
GGCGCTGGCGTTCTTTAATCTCATCTAGCGTTAATTGTTCCTCCTTTTCT
TCTTCGTCTGAATTCTTGCGTTGCCTTAGGTTTTTTCGACCGGCTTTTTT
GAACAACACTTTGGTGGTGGCTTCTGCTTTTTGTTCCTCTGCATCGCTCA
TGTCGACTGATAACT
BS04635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PA | 885 | CG7974-RA | 1..885 | 901..17 | 4375 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 113..999 | 902..16 | 4405 | 99.8 | Minus |
CG7974-RA | 1137 | CG7974-RA | 113..999 | 902..16 | 4405 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 785..172 | 3070 | 100 | Minus |
3L | 28110227 | 3L | 1666090..1666245 | 171..16 | 780 | 100 | Minus |
3L | 28110227 | 3L | 1665250..1665366 | 902..786 | 555 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:11:21 has no hits.
BS04635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:32 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..885 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:38 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..885 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:33 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..999 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:21 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..999 | 16..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:21 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1666090..1666245 | 16..171 | 100 | | Minus |
3L | 1665250..1665366 | 786..902 | 98 | -> | Minus |
3L | 1665421..1666034 | 172..785 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:33 Download gff for
BS04635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665250..1665366 | 786..902 | 98 | -> | Minus |
arm_3L | 1665421..1666034 | 172..785 | 100 | -> | Minus |
arm_3L | 1666090..1666245 | 16..171 | 100 | | Minus |
BS04635.5prime Sequence
915 bp (829 high quality bases) assembled on 2005-11-29
> BS04635.5prime
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACTA
AAAGCTTTCTAGACC
BS04635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PA | 885 | CG7974-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 113..999 | 16..902 | 4435 | 100 | Plus |
CG7974-RA | 1137 | CG7974-RA | 113..999 | 16..902 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 133..746 | 3070 | 100 | Plus |
3L | 28110227 | 3L | 1666090..1666245 | 747..902 | 780 | 100 | Plus |
3L | 28110227 | 3L | 1665250..1665366 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:32:51 has no hits.
BS04635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:33 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:40 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:40 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..999 | 16..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:51 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 113..999 | 16..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:51 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1665250..1665366 | 16..132 | 100 | -> | Plus |
3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
3L | 1666090..1666245 | 747..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:40 Download gff for
BS04635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665250..1665366 | 16..132 | 100 | -> | Plus |
arm_3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
arm_3L | 1666090..1666245 | 747..902 | 100 | | Plus |
BS04635.complete Sequence
917 bp (917 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634983
> BS04635.complete
GAAGTTATCAGTCGACATGAGCGATGCAGAGGAAACAAAAGCAGAAGCCA
CCACCAAAGTGTTGTTCAAAAAAGCCGGTCGAAAAAACCTAAGGCAACGC
AAGAATTCAGACGAAGAAGAAAAGGAGGAACAATTAACGCTAGATGAGAT
TAAAGAACGCCAGCGCCTCAGGCAGCGACCCAATGGCGTCAGCCTTGTGG
GACTGGCGCTGGGCAAGAAGATCGCGCCAGAAGAGGAGCTGGCCATCAAG
GATCCCTTTAATGTGAAGACCGGTGGTCTGGTCAACATGAAGCAGCTGAA
ATCGGGCAAGATGAAGGAGGCGGACGACGCCTACGACGTGGGCATTGGCA
CGCAGTTCTCGGCGGAGACGAATAAGCGGGATGAGGACGAGGAGATGATG
AAGTACATCGAGCAGGAGCTGCAGAAGCGCAAGGGAGGCGGCACGGAGGA
CGCAGCAGAGGACGACGGTGATGTAAACAAGTACCTGACCCCCGAGGATG
CCGCCCTGTACGCCCTGCCCGACCACCTGAGGCAGTCTTCCTCGCACAGA
TCGGAGGAGATGTTGTCCAACCAGATGCTCAATGGCATTCCTGAAGTGGA
CCTGGGCATTGTGGCCAAGATCCGCAACATAGAGGCCACCGAGGAAGCCA
AGCAGAAGCTGCTGCAGGACGCCAAGAACAAGAAGGACGGACCCTCGCAA
TTCGTGCCCACCAACATGGCGGTGAACTTCATGCAACACAATCGATTCAA
CATCGAGGACAACAGCGATCAAAGGAGGCGCAAGCGTGAGGAAAGGGAGG
GCAACAAATCCGCACAGCATCAGACGAATCCCAATGGAGTCAAGCGAGCC
ACAGATGACTACCATTATGATAAGTTTAGGAAGCAGTTCCGCAGATACTA
AAAGCTTTCTAGACCAT
BS04635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 885 | CG7974-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG7974-RA | 885 | CG7974-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-RB | 1348 | CG7974-RB | 113..999 | 16..902 | 4435 | 100 | Plus |
CG7974-RA | 1137 | CG7974-RA | 113..999 | 16..902 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1665421..1666034 | 133..746 | 3070 | 100 | Plus |
3L | 28110227 | 3L | 1666090..1666245 | 747..902 | 780 | 100 | Plus |
3L | 28110227 | 3L | 1665250..1665366 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:36:38 has no hits.
BS04635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:19 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:58 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 108..994 | 16..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:01 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 114..996 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:19 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 108..994 | 16..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:49 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7974-RA | 114..996 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:49 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1665251..1665366 | 17..132 | 100 | -> | Plus |
3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
3L | 1666090..1666242 | 747..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:01 Download gff for
BS04635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1665251..1665366 | 17..132 | 100 | -> | Plus |
arm_3L | 1665421..1666034 | 133..746 | 100 | -> | Plus |
arm_3L | 1666090..1666242 | 747..899 | 100 | | Plus |
BS04635.pep Sequence
Translation from 16 to 900
> BS04635.pep
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRY*
BS04635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7974-PB | 294 | CG7974-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
CG7974-PA | 294 | CG7974-PA | 1..294 | 1..294 | 1507 | 100 | Plus |