Clone BS04641 Report

Search the DGRC for BS04641

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptnst-RA
Protein status:BS04641.pep: full length peptide match
Sequenced Size:1682

Clone Sequence Records

BS04641.3prime Sequence

435 bp (339 high quality bases) assembled on 2005-12-02

> BS04641.3prime
ATGGTCTAGAAAGCTTCTACAGGTGGGCACTGCTGTTGGGCTTCGTCAAT
GGGGGGCCAACTCCGCCGGCCAGTTTCTGGACCAGCAGACCCACTTCGTA
GGCAAGATTATCGGTGTCCTCTTTGGTGGCTGCTTCGGCATAGACGCGCA
CCACATCCTCGGTGCCCGAGGGGCGAACGAAGGAGCGTCCCCGCTTGTAT
TTCGCCACCACCTGGTTGATTTCCGTCTGCAGACCTTCGGGCTTTACGCA
CACGCGTTCCGCATCCGTCGTCTCGATGACATTGCGATCCTGCACCTTCA
CCTTTAGCTGTCGGTTGGGCAGATCGTTGTACGACGAGATCCAATCCTGG
ACATCCCAGCCCTTGTGATTTANGATTGTTTCCACCAGCAGCATGTCGGA
TATGGCATCGCCCACGGTCTCGTTGATAAGATCGA

BS04641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10627-PA 1650 CG10627-RA 1232..1650 435..17 2076 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
nst-RA 2202 CG10627-RA 1368..1787 435..16 2089 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12527801..12528118 118..435 1579 99.7 Plus
3L 28110227 3L 12527630..12527734 16..120 525 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:10:47 has no hits.

BS04641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:38 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10627-PA 1233..1650 17..434 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:47 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10627-PA 1233..1650 17..434 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:15:27 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
nst-RA 1369..1789 13..434 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:57:43 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
nst-RA 1369..1789 13..434 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:57:43 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12527628..12527732 13..118 99 <- Plus
3L 12527802..12528117 119..434 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:15:27 Download gff for BS04641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12520728..12520832 13..118 99 <- Plus
arm_3L 12520902..12521217 119..434 99   Plus

BS04641.5prime Sequence

387 bp (361 high quality bases) assembled on 2005-12-02

> BS04641.5prime
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAAACATATCGATGTGACGACCAG

BS04641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10627-PA 1650 CG10627-RA 1..371 17..387 1805 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
nst-RA 2202 CG10627-RA 137..507 17..387 1825 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12528979..12529248 387..118 1320 99.3 Minus
3L 28110227 3L 12529934..12530035 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-11 21:44:07 has no hits.

BS04641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:39 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10627-PA 1..371 17..387 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:48 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10627-PA 1..371 17..387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:55 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
nst-RA 128..507 6..387 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:32 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
nst-RA 128..507 6..387 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:32 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12528979..12529248 118..387 99 <- Minus
3L 12529935..12530044 6..117 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:55 Download gff for BS04641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12522079..12522348 118..387 99 <- Minus
arm_3L 12523035..12523144 6..117 96   Minus

BS04641.complete Sequence

1682 bp assembled on 2010-05-12

GenBank Submission: KX798240

> BS04641.complete
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAGGTGTTT
GTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGCGGTGGC
CGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCATTGTGA
CCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAGGAGGCA
TACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAAGGCATT
CGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCAATAGCA
TCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTGCAGTTC
ATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCAGGGCAT
CGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGAAGGTGC
AGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTACACGAGA
TGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTTTACCGA
CGACAAGGGTGAGTTCCATCTGCTCGATGGCGATCGCATAGCCACCCTAA
TCGCCGGCTATCTCATGGAACTGGTCACACAATCCGAGATTAGCCTACGG
CTGGGCCTGGTGCAAACTGCCTACGCCAATGGTGCATCCACGGACTACAT
AGTGGACCAGCTGAAGTTTCCCGTTTCGTGCGTACCCACGGGCGTGAAGC
ACCTGCACCACAAGGCCTTGGAGTACGACATTGGTGTTTACTTCGAGGCG
AATGGCCACGGAACGATTGTGTTCAGTGACAATGCTAAGGCGACGATTGC
CCAGGTGGCCCAAACTAAGGAGAGTGCCAAGACGTTGCTGCTGCTCATCG
ATCTTATCAACGAGACCGTGGGCGATGCCATATCCGACATGCTGCTGGTG
GAAACAATCCTAAATCACAAGGGCTGGGATGTCCAGGATTGGATCTCGTC
GTACAACGATCTGCCCAACCGACAGCTAAAGGTGAAGGTGCAGGATCGCA
ATGTCATCGAGACGACGGATGCGGAACGCGTGTGCGTAAAGCCCGAAGGT
CTGCAGACGGAAATCAACCAGGTGGTGGCGAAATACAAGCGGGGACGCTC
CTTCGTTCGCCCCTCGGGCACCGAGGATGTGGTGCGCGTCTATGCCGAAG
CAGCCACCAAAGAGGACACCGATAATCTTGCCTACGAAGTGGGTCTGCTG
GTCCAGAAACTGGCCGGCGGAGTTGGCCCCCCATTGACGAAGCCCAACAG
CAGTGCCCACCTGTAGAAGCTTTCTAGACCAT

BS04641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
nst-RA 1650 CG10627-PA 1..1650 17..1666 8250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
nst-RA 2202 CG10627-RA 137..1787 17..1667 8255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12527801..12529248 1565..118 7240 100 Minus
3L 28110227 3L 12527630..12527734 1667..1563 525 100 Minus
3L 28110227 3L 12529934..12530035 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:03:44 has no hits.

BS04641.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:41 Download gff for BS04641.complete
Subject Subject Range Query Range Percent Splice Strand
CG10627-RA 170..1819 17..1666 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:41 Download gff for BS04641.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 137..1786 17..1666 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:50 Download gff for BS04641.complete
Subject Subject Range Query Range Percent Splice Strand
nst-RA 137..1786 17..1666 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:50 Download gff for BS04641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12527631..12527732 1565..1666 100 <- Minus
3L 12527802..12529248 118..1564 100 <- Minus
3L 12529935..12530035 17..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:41 Download gff for BS04641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12520731..12520832 1565..1666 100 <- Minus
arm_3L 12520902..12522348 118..1564 100 <- Minus
arm_3L 12523035..12523135 17..117 100   Minus

BS04641.pep Sequence

Translation from 16 to 1665

> BS04641.pep
MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT
LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN
VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA
LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN
GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI
NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF
HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK
FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT
KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP
NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS
GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*

BS04641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
nst-PA 549 CG10627-PA 1..549 1..549 2815 100 Plus