Clone Sequence Records
BS04641.3prime Sequence
435 bp (339 high quality bases) assembled on 2005-12-02
> BS04641.3prime
ATGGTCTAGAAAGCTTCTACAGGTGGGCACTGCTGTTGGGCTTCGTCAAT
GGGGGGCCAACTCCGCCGGCCAGTTTCTGGACCAGCAGACCCACTTCGTA
GGCAAGATTATCGGTGTCCTCTTTGGTGGCTGCTTCGGCATAGACGCGCA
CCACATCCTCGGTGCCCGAGGGGCGAACGAAGGAGCGTCCCCGCTTGTAT
TTCGCCACCACCTGGTTGATTTCCGTCTGCAGACCTTCGGGCTTTACGCA
CACGCGTTCCGCATCCGTCGTCTCGATGACATTGCGATCCTGCACCTTCA
CCTTTAGCTGTCGGTTGGGCAGATCGTTGTACGACGAGATCCAATCCTGG
ACATCCCAGCCCTTGTGATTTANGATTGTTTCCACCAGCAGCATGTCGGA
TATGGCATCGCCCACGGTCTCGTTGATAAGATCGA
BS04641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10627-PA | 1650 | CG10627-RA | 1232..1650 | 435..17 | 2076 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nst-RA | 2202 | CG10627-RA | 1368..1787 | 435..16 | 2089 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12527801..12528118 | 118..435 | 1579 | 99.7 | Plus |
3L | 28110227 | 3L | 12527630..12527734 | 16..120 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:10:47 has no hits.
BS04641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:38 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10627-PA | 1233..1650 | 17..434 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:47 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10627-PA | 1233..1650 | 17..434 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:15:27 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 1369..1789 | 13..434 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:57:43 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 1369..1789 | 13..434 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:57:43 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12527628..12527732 | 13..118 | 99 | <- | Plus |
3L | 12527802..12528117 | 119..434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:15:27 Download gff for
BS04641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12520728..12520832 | 13..118 | 99 | <- | Plus |
arm_3L | 12520902..12521217 | 119..434 | 99 | | Plus |
BS04641.5prime Sequence
387 bp (361 high quality bases) assembled on 2005-12-02
> BS04641.5prime
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAAACATATCGATGTGACGACCAG
BS04641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10627-PA | 1650 | CG10627-RA | 1..371 | 17..387 | 1805 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nst-RA | 2202 | CG10627-RA | 137..507 | 17..387 | 1825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12528979..12529248 | 387..118 | 1320 | 99.3 | Minus |
3L | 28110227 | 3L | 12529934..12530035 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:44:07 has no hits.
BS04641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:39 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10627-PA | 1..371 | 17..387 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:48 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10627-PA | 1..371 | 17..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:55 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 128..507 | 6..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:32 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 128..507 | 6..387 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:32 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12528979..12529248 | 118..387 | 99 | <- | Minus |
3L | 12529935..12530044 | 6..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:55 Download gff for
BS04641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12522079..12522348 | 118..387 | 99 | <- | Minus |
arm_3L | 12523035..12523144 | 6..117 | 96 | | Minus |
BS04641.complete Sequence
1682 bp assembled on 2010-05-12
GenBank Submission: KX798240
> BS04641.complete
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAGGTGTTT
GTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGCGGTGGC
CGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCATTGTGA
CCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAGGAGGCA
TACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAAGGCATT
CGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCAATAGCA
TCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTGCAGTTC
ATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCAGGGCAT
CGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGAAGGTGC
AGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTACACGAGA
TGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTTTACCGA
CGACAAGGGTGAGTTCCATCTGCTCGATGGCGATCGCATAGCCACCCTAA
TCGCCGGCTATCTCATGGAACTGGTCACACAATCCGAGATTAGCCTACGG
CTGGGCCTGGTGCAAACTGCCTACGCCAATGGTGCATCCACGGACTACAT
AGTGGACCAGCTGAAGTTTCCCGTTTCGTGCGTACCCACGGGCGTGAAGC
ACCTGCACCACAAGGCCTTGGAGTACGACATTGGTGTTTACTTCGAGGCG
AATGGCCACGGAACGATTGTGTTCAGTGACAATGCTAAGGCGACGATTGC
CCAGGTGGCCCAAACTAAGGAGAGTGCCAAGACGTTGCTGCTGCTCATCG
ATCTTATCAACGAGACCGTGGGCGATGCCATATCCGACATGCTGCTGGTG
GAAACAATCCTAAATCACAAGGGCTGGGATGTCCAGGATTGGATCTCGTC
GTACAACGATCTGCCCAACCGACAGCTAAAGGTGAAGGTGCAGGATCGCA
ATGTCATCGAGACGACGGATGCGGAACGCGTGTGCGTAAAGCCCGAAGGT
CTGCAGACGGAAATCAACCAGGTGGTGGCGAAATACAAGCGGGGACGCTC
CTTCGTTCGCCCCTCGGGCACCGAGGATGTGGTGCGCGTCTATGCCGAAG
CAGCCACCAAAGAGGACACCGATAATCTTGCCTACGAAGTGGGTCTGCTG
GTCCAGAAACTGGCCGGCGGAGTTGGCCCCCCATTGACGAAGCCCAACAG
CAGTGCCCACCTGTAGAAGCTTTCTAGACCAT
BS04641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nst-RA | 1650 | CG10627-PA | 1..1650 | 17..1666 | 8250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nst-RA | 2202 | CG10627-RA | 137..1787 | 17..1667 | 8255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12527801..12529248 | 1565..118 | 7240 | 100 | Minus |
3L | 28110227 | 3L | 12527630..12527734 | 1667..1563 | 525 | 100 | Minus |
3L | 28110227 | 3L | 12529934..12530035 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:03:44 has no hits.
BS04641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:41 Download gff for
BS04641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10627-RA | 170..1819 | 17..1666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:41 Download gff for
BS04641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 137..1786 | 17..1666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:50 Download gff for
BS04641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nst-RA | 137..1786 | 17..1666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:50 Download gff for
BS04641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12527631..12527732 | 1565..1666 | 100 | <- | Minus |
3L | 12527802..12529248 | 118..1564 | 100 | <- | Minus |
3L | 12529935..12530035 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:41 Download gff for
BS04641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12520731..12520832 | 1565..1666 | 100 | <- | Minus |
arm_3L | 12520902..12522348 | 118..1564 | 100 | <- | Minus |
arm_3L | 12523035..12523135 | 17..117 | 100 | | Minus |
BS04641.pep Sequence
Translation from 16 to 1665
> BS04641.pep
MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT
LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN
VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA
LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN
GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI
NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF
HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK
FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT
KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP
NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS
GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHL*
BS04641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nst-PA | 549 | CG10627-PA | 1..549 | 1..549 | 2815 | 100 | Plus |