Clone Sequence Records
BS04642.complete Sequence
2414 bp assembled on 2009-12-07
GenBank Submission: KX798396
> BS04642.complete
GAAGTTATCAGTCGACATGAGCTGCAAGGTGCGGCTGATGGAGGACGGCT
CGCTGGACGAGGAGCCGCTGACCCTCAAGGAGATCGCCTACCAGAAGCTG
TGCAACAATCTGGACATCATTAGCAGCCACCGGCCAGATGGCCAGCGCGG
CCTCAATCCGGGCATTGTGCTGCCCAACGAGATCTGCGACGGCTTCCTCG
AGAACTATCAGCGATTCAATCGCCCGCTGGACGACAGCGTCATCCGCCTC
TTCGAGGACACACACCGCACTTCGCTCAAGATCGTCAATCTTCGCAACAG
CACCCTAAGCAGTATAGGCTTGGAGACTCTGATGCGGCACAAACTGTTCG
CTTTGTCCTTGTGGTACTGTGACATGATATCCGTTGGTTCCCACCACCTT
CTGGCCCACTACGGCGACAGTCTGCGATCCCTGGAATTGGGCATCAGTTC
CCATCTGCTGCAGTACGCGGAGCCCAACGAGAAGGAGCCAGTGGACTTCC
AGTTGACTTGTCCGCATCTGCGGCGGCTGGTGCTCAACGGTGTTGTGATG
CACCACCGCCTGCAGTTCGCTCACCTCCACGACTTGGGCCACCTGGACCT
GACCTCCTGCGTGCTGGCCAACTTCAGCCTTGAGGCATTGGGCTCGCTGC
CCAATCTGCACACGCTCATCCTGTTCAATGTGTGGCCCATCGCCAACCAG
CTGCATGCGATCTGCTGCCTGAGGCGTCTGTGCACACTGGACATATCCAT
CTCCAGTTCCGGAAATGGCCACGGCACCTACGACCTGCCCGATCAGACGC
TGGAGATGCTGATGGACAACTTGCGACATCTCACACATTTGGATATCTCT
GGCACGAATTTGGCCGGCAACGGTGTGGCCACCAAGGAGTCGACAACTAC
CAGTGGCATGCAGCAGAGCCCCAAAATGGAGCAACACTTTGCCCTCACAG
ACATCCCGGGGCTAGCGTCCCGCACCCAGCGACCGCTGCAGTTCCTAGGC
CTCTATCACACGGCCCACTGGGCCTGCAAAAGACACGATATTCCAGCTTT
GGAGGTAGCTGGCGATGCCAACGAGCAGCAAATCCTTACTGCGGCGCGTT
ATTACCACGACAGACCAGTGCTTCTGACAAGAGTTCTCAACGACTTGTAC
CATCTCTTCCGCTTCGAGAACTGCAAGGACATACACACAGCACTGGATGT
TGTGCTCTCCGCCATGGATCGGCATCTCAAGTTCAAGCACATGCAAATCT
CCGGCAGTGCCACGCTGTTCTACATTGTCAAGGGCAGGGATCGATCCAAG
TTTGGAGCACTACTGCGCAATCACATCATTCGCACGCTGCTCAATGGCAT
GGAGATGCACATCACCGACGACACCATGCTGCGGAATGGTTACCTCACGC
TCACCCAGTTTCACATGCCAGTCGATGTGCTCTTCGAGTACGAGCGTCTC
ATCAAGATCCTGCTGCACGGCGTTTCTAAGACGGAGCAAGAGGGATTTGT
CCAGCGCATAGCAATCTACCTGCTGAACACACTCGCTTGCCAGGTGGATG
GGCGACAGAAGCTCTTCCTGGGCGAGTTGGGCGTAGTTAGTACCATGTTC
ACGTTGATAAAGGATCGGCTGACTCGCTCCGTTTTCGACGATGTGATGGA
GGTGGCTTGGTCCACCATGTGGAACGTAACCGATGAGACTGCTATTAATT
GTAAGAGATTCCTCGATGGACGTGGCATGGAGTATTTCCTTAAGTGTTTA
CATACCTTCCCGGATCGTGACGAGCTGTTGCGCAACATGATGGGCCTGCT
GGGCAATGTGGCCGAGGTGAAGTGGCTGCGGCCCAAGCTGATGACCCAGG
AGTTCATTGAGGTGTTTGCCCGTCTGCTGGACTCCCTGAGCGATGGCATC
GAGGTGGGTGGTGCTAGTGCGAGTGTGGTGGCGAGAGTGCGGGAGAGAGA
GATGGCCAGTGCTAACCATGCCTACCTGCGCTTCCAGGTCAGCTACAATG
CGGCTGGAGTGCTGGCGCACATTGCCTCGGACGGAGCGGATGCCTGGACG
ATCAAGACGCCCAGCCGGGAGCACGTGCTGGAGCGCATGGTGGCCGCCAT
TCAGCGGTGGAACATCAAGAGCGAGCGGAACATCAACTACCGCAGCTTTG
AGCCGATCCTCAGCCTGGTGCGCTGCTACGAGACGCCCCAGTGCCAACAT
TGGGCTGTTTGGGCCCTGGCCAATCTGACACAGGTTTATCCCGAAAAATA
TTGCAAGCTGGTGGAGCAGGAGAACGGCATCCAGATCCTCAACGAGCTAA
TCGAGCACGAGAGTCCCTACTGCGAGATCAAGCGCATCGCTCGCCTGGTC
ATAGAGCAGTGCGACTCCGGATCGGAACGCATGGTCGTCGACGGCTAAAA
GCTTTCTAGACCAT
BS04642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-RA | 2382 | CG12084-PA | 1..2382 | 17..2398 | 11910 | 100 | Plus |
| CG12084-RB | 2298 | CG12084-PB | 1..1889 | 17..1905 | 9445 | 100 | Plus |
| CG12084-RB | 2298 | CG12084-PB | 1886..2298 | 1986..2398 | 2065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-RA | 3148 | CG12084-RA | 383..2764 | 17..2398 | 11910 | 100 | Plus |
| CG12084-RB | 3483 | CG12084-RB | 383..2271 | 17..1905 | 9445 | 100 | Plus |
| CG12084-RB | 3483 | CG12084-RB | 2268..2680 | 1986..2398 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1493329..1494270 | 1257..316 | 4710 | 100 | Minus |
| 3L | 28110227 | 3L | 1491982..1492467 | 2235..1750 | 2415 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1494589..1494890 | 318..17 | 1510 | 100 | Minus |
| 3L | 28110227 | 3L | 1493094..1493267 | 1429..1256 | 870 | 100 | Minus |
| 3L | 28110227 | 3L | 1491754..1491923 | 2398..2229 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 1492876..1493038 | 1591..1429 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 1492646..1492807 | 1753..1592 | 810 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 4395..4477 | 508..426 | 116 | 65.9 | Minus |
BS04642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:28 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 407..2786 | 17..2396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:42 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..2762 | 17..2396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:01 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 407..2786 | 17..2396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:30 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..2762 | 17..2396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:30 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1491756..1491918 | 2234..2396 | 100 | <- | Minus |
| 3L | 1491984..1492463 | 1754..2233 | 100 | <- | Minus |
| 3L | 1492646..1492807 | 1592..1753 | 100 | <- | Minus |
| 3L | 1492876..1493037 | 1430..1591 | 100 | <- | Minus |
| 3L | 1493094..1493265 | 1258..1429 | 100 | <- | Minus |
| 3L | 1493329..1494268 | 318..1257 | 100 | <- | Minus |
| 3L | 1494590..1494890 | 17..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:42 Download gff for
BS04642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1493094..1493265 | 1258..1429 | 100 | <- | Minus |
| arm_3L | 1491756..1491918 | 2234..2396 | 100 | <- | Minus |
| arm_3L | 1491984..1492463 | 1754..2233 | 100 | <- | Minus |
| arm_3L | 1492646..1492807 | 1592..1753 | 100 | <- | Minus |
| arm_3L | 1492876..1493037 | 1430..1591 | 100 | <- | Minus |
| arm_3L | 1493329..1494268 | 318..1257 | 100 | <- | Minus |
| arm_3L | 1494590..1494890 | 17..317 | 100 | | Minus |
BS04642.3prime Sequence
935 bp (867 high quality bases) assembled on 2005-12-02
> BS04642.3prime
ATGGTCTAGAAAGCTTTTAGCCGTCGACGACCATGCGTTCCGATCCGGAG
TCGCACTGCTCTATGACCAGGCGAGCGATGCGCTTGATCTCGCAGTAGGG
ACTCTCGTGCTCGATTAGCTCGTTGAGGATCTGGATGCCGTTCTCCTGCT
CCACCAGCTTGCAATATTTTTCGGGATAAACCTGTGTCAGATTGGCCAGG
GCCCAAACAGCCCAATGTTGGCACTGGGGCGTCTCGTAGCAGCGCACCAG
GCTGAGGATCGGCTCAAAGCTGCGGTAGTTGATGTTCCGCTCGCTCTTGA
TGTTCCACCGCTGAATGGCGGCCACCATGCGCTCCAGCACGTGCTCCCGG
CTGGGCGTCTTGATCGTCCAGGCATCCGCTCCGTCCGAGGCAATGTGCGC
CAGCACTCCAGCCGCATTGTAGCTGACCTGGAAGCGCAGGTAGGCATGGT
TAGCACTGGCCATCTCTCTCTCCCGCACTCTCGCCACCACACTCGCACTA
GCACCACCCACCTCGATGCCATCGCTCAGGGAGTCCAGCAGACGGGCAAA
CACCTCAATGAACTCCTGGGTCATCAGCTTGGGCCGCAGCCACTTCACCT
CGGCCACATTGCCCAGCAGGCCCATCATGTTGCGCAACAGCTCGTCACGA
TCCGGGAAGGTATGTAAACACTTAAGGAAATACTCCATGCCACGTCCATC
GAGGAATCTCTTACAATTAATAGCAGTCTCATCGGTTACGTTCCACATGG
TGGACCAAGCCACCTCCATCACATCGTCGAAAACGGAGCGAGTCAGCCGA
TCCTTTATCAACGTGAACATGGTACTAACTACGCCCAACTCGCCCAGGAA
GAGCTTCTGTCGCCCATCCACCTGGCAAGCGAGTGTGTTCAGCAGGTAGA
TTGCTATGCGCTGGACAATTCCCTCTTGCTCCGTC
BS04642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-PA | 2382 | CG12084-RA | 1464..2382 | 935..17 | 4570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-RA | 3148 | CG12084-RA | 1846..2764 | 935..17 | 4580 | 99.9 | Minus |
| CG12084-RB | 3483 | CG12084-RB | 1846..2271 | 935..510 | 2115 | 99.8 | Minus |
| CG12084-RB | 3483 | CG12084-RB | 2268..2680 | 429..17 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1491982..1492467 | 180..665 | 2415 | 99.8 | Plus |
| 3L | 28110227 | 3L | 1491754..1491923 | 17..186 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 1492646..1492807 | 662..823 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 1492876..1492987 | 824..935 | 545 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:53:39 has no hits.
BS04642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:40 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-PA | 1464..2382 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:49 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-PA | 1464..2382 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:54:56 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 1846..2766 | 13..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:18 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 1846..2766 | 13..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:18 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1491752..1491918 | 13..181 | 98 | <- | Plus |
| 3L | 1491984..1492463 | 182..661 | 100 | <- | Plus |
| 3L | 1492646..1492807 | 662..823 | 100 | <- | Plus |
| 3L | 1492876..1492987 | 824..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:54:56 Download gff for
BS04642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1492876..1492987 | 824..935 | 99 | | Plus |
| arm_3L | 1491752..1491918 | 13..181 | 98 | <- | Plus |
| arm_3L | 1491984..1492463 | 182..661 | 100 | <- | Plus |
| arm_3L | 1492646..1492807 | 662..823 | 100 | <- | Plus |
BS04642.5prime Sequence
949 bp (759 high quality bases) assembled on 2005-12-02
> BS04642.5prime
GAAGTTATCAGTCGACATGAGCTGCAAGGTGCGGCTGATGGAGGACGGCT
CGCTGGACGAGGAGCCGCTGACCCTCAAGGAGATCGCCTACCAGAAGCTG
TGCAACAATCTGGACATCATTAGCAGCCACCGGCCAGATGGCCAGCGCGG
CCTCAATCCGGGCATTGTGCTGCCCAACGAGATCTGCGACGGCTTCCTCG
AGAACTATCAGCGATTCAATCGCCCGCTGGACGACAGCGTCATCCGCCTC
TTCGAGGACACACACCGCACTTCGCTCAAGATCGTCAATCTTCGCAACAG
CACCCTAAGCAGTATAGGCTTGGAGACTCTGATGCGGCACAAACTGTTCG
CTTTGTCCTTGTGGTACTGTGACATGATATCCGTTGGTTCCCACCACCTT
CTGGCCCACTACGGCGACAGTCTGCGATCCCTGGAATTGGGCATCAGTTC
CCATCTGCTGCAGTACGCGGAGCCCAACGAGAAGGAGCCAGTGGACTTCC
AGTTGACTTGTCCGCATCTGCGGCGGCTGGTGCTCAACGGTGTTGTGATG
CACCACCGCCTGCAGTTCGCTCACCTCCACGACTTGGGCCACCTGGACCT
GACCTCCTGCGTGCTGGCCAACTTCAGCCTTGAGGCATTGGGCTCGCTGC
CCAATCTGCACACGCTCATCCTGTTCAATGTGTGGCCCATCGCCAACCAG
CTGCATGCGATCTGCTGCCTGAGGCGTCTGTGCACACTGGACATATCCAT
CTCCAGTTCCGGAAATGGCCACGGCACCTACGACCTGCCCGATCAGACGC
TGGAGATGCTGATGGACAACTTGCGACATCTCACACATTTGGATATCTCT
GGCACGAATTTGGCCGGCAACGGTGTGGCCACCAAGGAGTCGACNACTAC
CAGTGGCATGCAGCAGAGCCCCAAATGGAGCACACTTTGCCCTCACAGA
BS04642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-PA | 2382 | CG12084-RA | 1..909 | 17..925 | 4526 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-RB | 3483 | CG12084-RB | 383..1317 | 17..949 | 4614 | 99.7 | Plus |
| CG12084-RA | 3148 | CG12084-RA | 383..1317 | 17..949 | 4614 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1493635..1494270 | 949..316 | 3069 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1494589..1494890 | 318..17 | 1510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 4395..4477 | 508..426 | 116 | 65.9 | Minus |
BS04642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:41 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-PA | 1..934 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:51 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-PA | 1..934 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:41:07 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..1316 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:46 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..1316 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:46 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1494590..1494890 | 17..317 | 100 | | Minus |
| 3L | 1493636..1494268 | 318..948 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:41:07 Download gff for
BS04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1493636..1494268 | 318..948 | 99 | <- | Minus |
| arm_3L | 1494590..1494890 | 17..317 | 100 | | Minus |
BS04642.pep Sequence
Translation from 16 to 2397
> BS04642.pep
MSCKVRLMEDGSLDEEPLTLKEIAYQKLCNNLDIISSHRPDGQRGLNPGI
VLPNEICDGFLENYQRFNRPLDDSVIRLFEDTHRTSLKIVNLRNSTLSSI
GLETLMRHKLFALSLWYCDMISVGSHHLLAHYGDSLRSLELGISSHLLQY
AEPNEKEPVDFQLTCPHLRRLVLNGVVMHHRLQFAHLHDLGHLDLTSCVL
ANFSLEALGSLPNLHTLILFNVWPIANQLHAICCLRRLCTLDISISSSGN
GHGTYDLPDQTLEMLMDNLRHLTHLDISGTNLAGNGVATKESTTTSGMQQ
SPKMEQHFALTDIPGLASRTQRPLQFLGLYHTAHWACKRHDIPALEVAGD
ANEQQILTAARYYHDRPVLLTRVLNDLYHLFRFENCKDIHTALDVVLSAM
DRHLKFKHMQISGSATLFYIVKGRDRSKFGALLRNHIIRTLLNGMEMHIT
DDTMLRNGYLTLTQFHMPVDVLFEYERLIKILLHGVSKTEQEGFVQRIAI
YLLNTLACQVDGRQKLFLGELGVVSTMFTLIKDRLTRSVFDDVMEVAWST
MWNVTDETAINCKRFLDGRGMEYFLKCLHTFPDRDELLRNMMGLLGNVAE
VKWLRPKLMTQEFIEVFARLLDSLSDGIEVGGASASVVARVREREMASAN
HAYLRFQVSYNAAGVLAHIASDGADAWTIKTPSREHVLERMVAAIQRWNI
KSERNINYRSFEPILSLVRCYETPQCQHWAVWALANLTQVYPEKYCKLVE
QENGIQILNELIEHESPYCEIKRIARLVIEQCDSGSERMVVDG*
BS04642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-PA | 793 | CG12084-PA | 1..793 | 1..793 | 4156 | 100 | Plus |
| CG12084-PB | 765 | CG12084-PB | 1..765 | 1..793 | 3982 | 96.5 | Plus |
